RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 CCDC136Q96JN2 1154 aa18.23■□□□□ 0.51
HDAC4-214ENST00000535493 UGGT2Q9NYU1 1516 aa18.22■□□□□ 0.51
HDAC4-214ENST00000535493 DNAJC5BQ9UF47 199 aa18.22■□□□□ 0.51
HDAC4-214ENST00000535493 SALL2Q9Y467 1007 aaPredicted RBP18.22■□□□□ 0.51
HDAC4-214ENST00000535493 CDK13Q14004 1512 aaKnown RBP18.2■□□□□ 0.5
HDAC4-214ENST00000535493 CC2D2AQ9P2K1 1620 aa18.2■□□□□ 0.5
HDAC4-214ENST00000535493 CUL7Q14999 1698 aa18.2■□□□□ 0.5
HDAC4-214ENST00000535493 EHBP1L1Q8N3D4 1523 aa18.19■□□□□ 0.5
HDAC4-214ENST00000535493 ANKRD30BQ9BXX2 1392 aa18.19■□□□□ 0.5
HDAC4-214ENST00000535493 GAPVD1Q14C86 1478 aa18.18■□□□□ 0.5
HDAC4-214ENST00000535493 URB2Q14146 1524 aaKnown RBP18.17■□□□□ 0.5
HDAC4-214ENST00000535493 SAMD9Q5K651 1589 aa18.17■□□□□ 0.5
HDAC4-214ENST00000535493 NPM2Q86SE8 214 aaKnown RBP18.15■□□□□ 0.5
HDAC4-214ENST00000535493 NUDCQ9Y266 331 aa18.15■□□□□ 0.5
HDAC4-214ENST00000535493 ZNF777Q9ULD5 760 aaPredicted RBP18.14■□□□□ 0.49
HDAC4-214ENST00000535493 SPATA31E1Q6ZUB1 1445 aa18.13■□□□□ 0.49
HDAC4-214ENST00000535493 HECW1Q76N89 1606 aa18.12■□□□□ 0.49
HDAC4-214ENST00000535493 ARHGEF11O15085 1522 aa18.12■□□□□ 0.49
HDAC4-214ENST00000535493 TMC1Q8TDI8 760 aa18.12■□□□□ 0.49
HDAC4-214ENST00000535493 RPRD2Q5VT52 1461 aaKnown RBP18.12■□□□□ 0.49
HDAC4-214ENST00000535493 EPRSP07814 1512 aaKnown RBP18.11■□□□□ 0.49
HDAC4-214ENST00000535493 TCOF1Q13428 1488 aaKnown RBP18.11■□□□□ 0.49
HDAC4-214ENST00000535493 DHX29Q7Z478 1369 aaKnown RBP18.11■□□□□ 0.49
HDAC4-214ENST00000535493 TEX14Q8IWB6 1497 aa18.1■□□□□ 0.49
HDAC4-214ENST00000535493 ANP32AP39687 249 aaKnown RBP18.09■□□□□ 0.49
HDAC4-214ENST00000535493 KDM2AQ9Y2K7 1162 aa18.09■□□□□ 0.49
HDAC4-214ENST00000535493 SMG6Q86US8 1419 aaKnown RBP18.09■□□□□ 0.49
HDAC4-214ENST00000535493 THOC2Q8NI27 1593 aaKnown RBP18.08■□□□□ 0.49
HDAC4-214ENST00000535493 GCC2Q8IWJ2 1684 aa18.08■□□□□ 0.49
HDAC4-214ENST00000535493 USP47Q96K76 1375 aa18.07■□□□□ 0.48
HDAC4-214ENST00000535493 IPO9Q96P70 1041 aaKnown RBP18.07■□□□□ 0.48
HDAC4-214ENST00000535493 PNISRQ8TF01 805 aaKnown RBP18.07■□□□□ 0.48
HDAC4-214ENST00000535493 ZBTB47Q9UFB7 747 aaPredicted RBP18.07■□□□□ 0.48
HDAC4-214ENST00000535493 DAPK1P53355 1430 aa18.06■□□□□ 0.48
HDAC4-214ENST00000535493 PKD2Q13563 968 aa18.06■□□□□ 0.48
HDAC4-214ENST00000535493 ABCC5O15440 1437 aa18.06■□□□□ 0.48
HDAC4-214ENST00000535493 SKAP1Q86WV1 359 aa18.05■□□□□ 0.48
HDAC4-214ENST00000535493 EXOC6Q8TAG9 804 aa18.04■□□□□ 0.48
HDAC4-214ENST00000535493 LAMC3Q9Y6N6 1575 aa18.03■□□□□ 0.48
HDAC4-214ENST00000535493 MIA2Q96PC5 1412 aa18.03■□□□□ 0.48
HDAC4-214ENST00000535493 LAS1LQ9Y4W2 734 aaKnown RBP18.02■□□□□ 0.48
HDAC4-214ENST00000535493 ABCA5Q8WWZ7 1642 aa18.02■□□□□ 0.47
HDAC4-214ENST00000535493 RNF123Q5XPI4 1314 aa18.01■□□□□ 0.47
HDAC4-214ENST00000535493 CARD11Q9BXL7 1154 aa18.01■□□□□ 0.47
HDAC4-214ENST00000535493 ST20-MTHFSA0A0A6YYL1 179 aa18■□□□□ 0.47
HDAC4-214ENST00000535493 RTL5Q5HYW3 569 aaPredicted RBP18■□□□□ 0.47
HDAC4-214ENST00000535493 CFDP1Q9UEE9 299 aaPredicted RBP18■□□□□ 0.47
HDAC4-214ENST00000535493 MYT1LQ9UL68 1186 aa18■□□□□ 0.47
HDAC4-214ENST00000535493 BCORL1Q5H9F3 1711 aa17.99■□□□□ 0.47
HDAC4-214ENST00000535493 PDS5BQ9NTI5 1447 aa17.99■□□□□ 0.47
HDAC4-214ENST00000535493 PLIN1O60240 522 aa17.97■□□□□ 0.47
HDAC4-214ENST00000535493 RTN4Q9NQC3 1192 aaKnown RBP17.97■□□□□ 0.47
HDAC4-214ENST00000535493 CDCA7LQ96GN5 454 aa17.96■□□□□ 0.47
HDAC4-214ENST00000535493 PZPP20742 1482 aa17.95■□□□□ 0.46
HDAC4-214ENST00000535493 ROCK1Q13464 1354 aa17.94■□□□□ 0.46
HDAC4-214ENST00000535493 RRP1P56182 461 aaKnown RBP17.94■□□□□ 0.46
HDAC4-214ENST00000535493 PRG4Q92954 1404 aaPredicted RBP17.93■□□□□ 0.46
HDAC4-214ENST00000535493 IL27Q8NEV9 243 aa17.93■□□□□ 0.46
HDAC4-214ENST00000535493 DCAF11Q8TEB1 546 aa17.93■□□□□ 0.46
HDAC4-214ENST00000535493 IQGAP2Q13576 1575 aa17.92■□□□□ 0.46
HDAC4-214ENST00000535493 WDR62O43379 1518 aa17.92■□□□□ 0.46
HDAC4-214ENST00000535493 RCAN3Q9UKA8 241 aa17.92■□□□□ 0.46
HDAC4-214ENST00000535493 PDE4AP27815 886 aa17.9■□□□□ 0.46
HDAC4-214ENST00000535493 ANO8Q9HCE9 1232 aaPredicted RBP17.89■□□□□ 0.45
HDAC4-214ENST00000535493 KIAA1107Q9UPP5 1409 aa17.88■□□□□ 0.45
HDAC4-214ENST00000535493 NEFMP07197 916 aa17.88■□□□□ 0.45
HDAC4-214ENST00000535493 RGL3Q3MIN7 710 aa17.88■□□□□ 0.45
HDAC4-214ENST00000535493 NUP155O75694 1391 aa17.88■□□□□ 0.45
HDAC4-214ENST00000535493 CC2D1BQ5T0F9 858 aaKnown RBP17.87■□□□□ 0.45
HDAC4-214ENST00000535493 DNMT1P26358 1616 aaKnown RBP17.87■□□□□ 0.45
HDAC4-214ENST00000535493 NUP153P49790 1475 aaKnown RBP17.86■□□□□ 0.45
HDAC4-214ENST00000535493 MYBBP1AQ9BQG0 1328 aaKnown RBP17.86■□□□□ 0.45
HDAC4-214ENST00000535493 KIF15Q9NS87 1388 aa17.85■□□□□ 0.45
HDAC4-214ENST00000535493 SLC4A3P48751 1232 aa17.85■□□□□ 0.45
HDAC4-214ENST00000535493 MBD5Q9P267 1494 aa17.84■□□□□ 0.45
HDAC4-214ENST00000535493 FBLN2P98095 1184 aa17.84■□□□□ 0.45
HDAC4-214ENST00000535493 CAMSAP2Q08AD1 1489 aa17.83■□□□□ 0.44
HDAC4-214ENST00000535493 POLR1AO95602 1720 aaPredicted RBP17.82■□□□□ 0.44
HDAC4-214ENST00000535493 TARBP1Q13395 1621 aaKnown RBP17.82■□□□□ 0.44
HDAC4-214ENST00000535493 LRPPRCP42704 1394 aaKnown RBP17.82■□□□□ 0.44
HDAC4-214ENST00000535493 NBPF1Q3BBV0 1214 aa17.82■□□□□ 0.44
HDAC4-214ENST00000535493 BACH2Q9BYV9 841 aa17.82■□□□□ 0.44
HDAC4-214ENST00000535493 KDM5CP41229 1560 aa17.82■□□□□ 0.44
HDAC4-214ENST00000535493 ANKRD50Q9ULJ7 1429 aa17.8■□□□□ 0.44
HDAC4-214ENST00000535493 KIF21AQ7Z4S6 1674 aa17.8■□□□□ 0.44
HDAC4-214ENST00000535493 TCERG1O14776 1098 aaKnown RBP17.8■□□□□ 0.44
HDAC4-214ENST00000535493 C20orf194Q5TEA3 1177 aa17.8■□□□□ 0.44
HDAC4-214ENST00000535493 RALBP1Q15311 655 aa17.79■□□□□ 0.44
HDAC4-214ENST00000535493 CRBNQ96SW2 442 aa17.79■□□□□ 0.44
HDAC4-214ENST00000535493 ROCK2O75116 1388 aaKnown RBP17.79■□□□□ 0.44
HDAC4-214ENST00000535493 ZNF608Q9ULD9 1512 aaPredicted RBP17.79■□□□□ 0.44
HDAC4-214ENST00000535493 BRD4O60885 1362 aaPredicted RBP17.79■□□□□ 0.44
HDAC4-214ENST00000535493 HNRNPMP52272 730 aaKnown RBP eCLIP17.78■□□□□ 0.441e-6■■■■□ 25.6
HDAC4-214ENST00000535493 PLB1Q6P1J6 1458 aa17.78■□□□□ 0.44
HDAC4-214ENST00000535493 DISP1Q96F81 1524 aa17.78■□□□□ 0.44
HDAC4-214ENST00000535493 ARID4BQ4LE39 1312 aaPredicted RBP17.78■□□□□ 0.44
HDAC4-214ENST00000535493 ANKRD30AQ9BXX3 1397 aa17.78■□□□□ 0.44
HDAC4-214ENST00000535493 NLRP13Q86W25 1043 aa17.77■□□□□ 0.44
HDAC4-214ENST00000535493 GPATCH8Q9UKJ3 1502 aaKnown RBP17.77■□□□□ 0.43
HDAC4-214ENST00000535493 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.75■□□□□ 0.439e-7■■□□□ 12.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms