RNA–Protein interactions for RNA: ENST00000533464.5

PHRF1-205, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-205ENST00000533464 DHX57Q6P158 1386 aaKnown RBP22.74■■□□□ 1.23
PHRF1-205ENST00000533464 JPH4Q96JJ6 628 aa22.74■■□□□ 1.23
PHRF1-205ENST00000533464 LMOD2Q6P5Q4 547 aa22.72■■□□□ 1.23
PHRF1-205ENST00000533464 STK26Q9P289 416 aa22.7■■□□□ 1.23
PHRF1-205ENST00000533464 FANCD2Q9BXW9 1451 aa22.7■■□□□ 1.22
PHRF1-205ENST00000533464 CCDC18Q5T9S5 1454 aa22.69■■□□□ 1.22
PHRF1-205ENST00000533464 HAP1P54257 671 aaPredicted RBP22.68■■□□□ 1.22
PHRF1-205ENST00000533464 PNNQ9H307 717 aaKnown RBP22.68■■□□□ 1.22
PHRF1-205ENST00000533464 MS4A1P11836 297 aa22.68■■□□□ 1.22
PHRF1-205ENST00000533464 RALBP1Q15311 655 aa22.67■■□□□ 1.22
PHRF1-205ENST00000533464 KIF3BO15066 747 aa22.67■■□□□ 1.22
PHRF1-205ENST00000533464 GOLGA6L22H0YM25 854 aa22.65■■□□□ 1.22
PHRF1-205ENST00000533464 HDGFP51858 240 aaKnown RBP22.65■■□□□ 1.22
PHRF1-205ENST00000533464 SOX12O15370 315 aa22.64■■□□□ 1.22
PHRF1-205ENST00000533464 RSPH4AQ5TD94 716 aa22.64■■□□□ 1.22
PHRF1-205ENST00000533464 NOP58Q9Y2X3 529 aaKnown RBP22.64■■□□□ 1.21
PHRF1-205ENST00000533464 CASC1Q6TDU7 716 aa22.63■■□□□ 1.21
PHRF1-205ENST00000533464 CHMP4BQ9H444 224 aaKnown RBP22.63■■□□□ 1.21
PHRF1-205ENST00000533464 IGF1RP08069 1367 aa22.63■■□□□ 1.21
PHRF1-205ENST00000533464 RCAN3Q9UKA8 241 aa22.6■■□□□ 1.21
PHRF1-205ENST00000533464 NCLP19338 710 aaKnown RBP22.59■■□□□ 1.21
PHRF1-205ENST00000533464 RBM19Q9Y4C8 960 aaKnown RBP22.59■■□□□ 1.21
PHRF1-205ENST00000533464 SPAG9O60271 1321 aaKnown RBP22.59■■□□□ 1.21
PHRF1-205ENST00000533464 ERICH6BQ5W0A0 696 aa22.56■■□□□ 1.2
PHRF1-205ENST00000533464 U2AF1L5P0DN76 240 aaPredicted RBP22.56■■□□□ 1.2
PHRF1-205ENST00000533464 U2AF1Q01081 240 aaKnown RBP eCLIP22.56■■□□□ 1.2
PHRF1-205ENST00000533464 HDGFL2Q7Z4V5 671 aaPredicted RBP22.55■■□□□ 1.2
PHRF1-205ENST00000533464 FGD5Q6ZNL6 1462 aa22.53■■□□□ 1.2
PHRF1-205ENST00000533464 NLRP13Q86W25 1043 aa22.52■■□□□ 1.2
PHRF1-205ENST00000533464 TRHP20396 242 aaPredicted RBP22.52■■□□□ 1.2
PHRF1-205ENST00000533464 TRIM44Q96DX7 344 aaPredicted RBP22.52■■□□□ 1.2
PHRF1-205ENST00000533464 ST20-MTHFSA0A0A6YYL1 179 aa22.52■■□□□ 1.19
PHRF1-205ENST00000533464 EIF3AQ14152 1382 aaKnown RBP22.48■■□□□ 1.19
PHRF1-205ENST00000533464 RAD54L2Q9Y4B4 1467 aa22.47■■□□□ 1.19
PHRF1-205ENST00000533464 OS9Q13438 667 aaPredicted RBP22.46■■□□□ 1.19
PHRF1-205ENST00000533464 WASHC2CQ9Y4E1 1318 aa22.46■■□□□ 1.19
PHRF1-205ENST00000533464 NUTM2DQ5VT03 806 aaPredicted RBP22.46■■□□□ 1.19
PHRF1-205ENST00000533464 PTPRGP23470 1445 aa22.44■■□□□ 1.18
PHRF1-205ENST00000533464 GAPVD1Q14C86 1478 aa22.44■■□□□ 1.18
PHRF1-205ENST00000533464 TPRNQ4KMQ1 711 aa22.44■■□□□ 1.18
PHRF1-205ENST00000533464 HSP90AB1P08238 724 aaKnown RBP22.44■■□□□ 1.18
PHRF1-205ENST00000533464 CCDC144AA2RUR9 1427 aa22.43■■□□□ 1.18
PHRF1-205ENST00000533464 IPO8O15397 1037 aaKnown RBP22.42■■□□□ 1.18
PHRF1-205ENST00000533464 RTF1Q92541 710 aaKnown RBP22.42■■□□□ 1.18
PHRF1-205ENST00000533464 GOLGA2Q08379 1002 aa22.41■■□□□ 1.18
PHRF1-205ENST00000533464 PRKRIP1Q9H875 184 aaPredicted RBP22.41■■□□□ 1.18
PHRF1-205ENST00000533464 NCAPD3P42695 1498 aa22.41■■□□□ 1.18
PHRF1-205ENST00000533464 CCDC146Q8IYE0 955 aa22.4■■□□□ 1.18
PHRF1-205ENST00000533464 KIF21BO75037 1637 aa22.39■■□□□ 1.18
PHRF1-205ENST00000533464 TRAK1Q9UPV9 953 aa22.39■■□□□ 1.18
PHRF1-205ENST00000533464 PANK3Q9H999 370 aa22.38■■□□□ 1.17
PHRF1-205ENST00000533464 TSHZ2Q9NRE2 1034 aa22.38■■□□□ 1.17
PHRF1-205ENST00000533464 TERF2IPQ9NYB0 399 aa22.38■■□□□ 1.17
PHRF1-205ENST00000533464 KIF15Q9NS87 1388 aa22.38■■□□□ 1.17
PHRF1-205ENST00000533464 PHLDB1Q86UU1 1377 aa22.37■■□□□ 1.17
PHRF1-205ENST00000533464 PDE3BQ13370 1112 aa22.37■■□□□ 1.17
PHRF1-205ENST00000533464 TCERG1O14776 1098 aaKnown RBP22.36■■□□□ 1.17
PHRF1-205ENST00000533464 HSCBQ8IWL3 235 aa22.36■■□□□ 1.17
PHRF1-205ENST00000533464 ZNF644Q9H582 1327 aaPredicted RBP22.36■■□□□ 1.17
PHRF1-205ENST00000533464 MYBBP1AQ9BQG0 1328 aaKnown RBP22.35■■□□□ 1.17
PHRF1-205ENST00000533464 FGD6Q6ZV73 1430 aa22.35■■□□□ 1.17
PHRF1-205ENST00000533464 ITPRIPQ8IWB1 547 aa22.35■■□□□ 1.17
PHRF1-205ENST00000533464 CALD1Q05682 793 aaKnown RBP22.34■■□□□ 1.17
PHRF1-205ENST00000533464 USP47Q96K76 1375 aa22.34■■□□□ 1.17
PHRF1-205ENST00000533464 PAK3O75914 559 aaPredicted RBP22.34■■□□□ 1.17
PHRF1-205ENST00000533464 KCNJ4P48050 445 aa22.34■■□□□ 1.17
PHRF1-205ENST00000533464 RWDD1Q9H446 243 aaPredicted RBP22.34■■□□□ 1.17
PHRF1-205ENST00000533464 PTMAP06454 111 aaKnown RBP22.33■■□□□ 1.17
PHRF1-205ENST00000533464 APBB1O00213 710 aa22.33■■□□□ 1.17
PHRF1-205ENST00000533464 GLIPR1L2Q4G1C9 344 aa22.33■■□□□ 1.16
PHRF1-205ENST00000533464 SPRYD3Q8NCJ5 442 aa22.32■■□□□ 1.16
PHRF1-205ENST00000533464 MYOM3Q5VTT5 1437 aa22.3■■□□□ 1.16
PHRF1-205ENST00000533464 CLUAP1Q96AJ1 413 aa22.3■■□□□ 1.16
PHRF1-205ENST00000533464 ZRSR1Q15695 479 aaKnown RBP22.3■■□□□ 1.16
PHRF1-205ENST00000533464 FGD1P98174 961 aa22.29■■□□□ 1.16
PHRF1-205ENST00000533464 SMC4Q9NTJ3 1288 aa22.29■■□□□ 1.16
PHRF1-205ENST00000533464 LRRC9Q6ZRR7 1453 aa22.29■■□□□ 1.16
PHRF1-205ENST00000533464 AQRO60306 1485 aaKnown RBP eCLIP22.26■■□□□ 1.152e-7■■■■■ 30.3
PHRF1-205ENST00000533464 CENPJQ9HC77 1338 aaPredicted RBP22.26■■□□□ 1.15
PHRF1-205ENST00000533464 SUGP2Q8IX01 1082 aaKnown RBP eCLIP22.24■■□□□ 1.15
PHRF1-205ENST00000533464 RTN4Q9NQC3 1192 aaKnown RBP22.24■■□□□ 1.15
PHRF1-205ENST00000533464 PMFBP1Q8TBY8 1022 aa22.24■■□□□ 1.15
PHRF1-205ENST00000533464 RRP7AQ9Y3A4 280 aaKnown RBP22.23■■□□□ 1.15
PHRF1-205ENST00000533464 ARAP1Q96P48 1450 aa22.23■■□□□ 1.15
PHRF1-205ENST00000533464 UACAQ9BZF9 1416 aa22.23■■□□□ 1.15
PHRF1-205ENST00000533464 TAOK2Q9UL54 1235 aa22.23■■□□□ 1.15
PHRF1-205ENST00000533464 ZBED9Q6R2W3 1325 aa22.22■■□□□ 1.15
PHRF1-205ENST00000533464 PLCB2Q00722 1185 aa22.21■■□□□ 1.15
PHRF1-205ENST00000533464 NUTM2FA1L443 756 aa22.21■■□□□ 1.15
PHRF1-205ENST00000533464 MCCP23508 829 aa22.21■■□□□ 1.15
PHRF1-205ENST00000533464 CFAP44Q96MT7 982 aa22.21■■□□□ 1.15
PHRF1-205ENST00000533464 CASKIN1Q8WXD9 1431 aa22.2■■□□□ 1.15
PHRF1-205ENST00000533464 VGFO15240 615 aaPredicted RBP22.2■■□□□ 1.14
PHRF1-205ENST00000533464 NAP1L2Q9ULW6 460 aaPredicted RBP22.2■■□□□ 1.14
PHRF1-205ENST00000533464 EID1Q9Y6B2 187 aa22.2■■□□□ 1.14
PHRF1-205ENST00000533464 SYNJ1O43426 1573 aa22.19■■□□□ 1.14
PHRF1-205ENST00000533464 DEKP35659 375 aaKnown RBP22.19■■□□□ 1.14
PHRF1-205ENST00000533464 NGDNQ8NEJ9 315 aaKnown RBP22.19■■□□□ 1.14
PHRF1-205ENST00000533464 CFTRP13569 1480 aa22.18■■□□□ 1.14
PHRF1-205ENST00000533464 NPHP1O15259 732 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms