RNA–Protein interactions for RNA: ENST00000532918.4

COLCA1-203, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,366 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-203ENST00000532918 SAFB2Q14151 953 aaKnown RBP eCLIP13.88□□□□□ -0.19
COLCA1-203ENST00000532918 SOX12O15370 315 aa13.88□□□□□ -0.19
COLCA1-203ENST00000532918 CCDC18Q5T9S5 1454 aa13.88□□□□□ -0.19
COLCA1-203ENST00000532918 EIF3AQ14152 1382 aaKnown RBP13.87□□□□□ -0.19
COLCA1-203ENST00000532918 FANCD2Q9BXW9 1451 aa13.87□□□□□ -0.19
COLCA1-203ENST00000532918 NUP155O75694 1391 aa13.86□□□□□ -0.19
COLCA1-203ENST00000532918 PTPRGP23470 1445 aa13.85□□□□□ -0.19
COLCA1-203ENST00000532918 BECN1Q14457 450 aa13.85□□□□□ -0.19
COLCA1-203ENST00000532918 CC2D1BQ5T0F9 858 aaKnown RBP13.84□□□□□ -0.19
COLCA1-203ENST00000532918 VPS8Q8N3P4 1428 aa13.84□□□□□ -0.19
COLCA1-203ENST00000532918 CALD1Q05682 793 aaKnown RBP13.83□□□□□ -0.2
COLCA1-203ENST00000532918 SETD5Q9C0A6 1442 aa13.83□□□□□ -0.2
COLCA1-203ENST00000532918 ZRSR1Q15695 479 aaKnown RBP13.82□□□□□ -0.2
COLCA1-203ENST00000532918 SIN3AQ96ST3 1273 aa13.81□□□□□ -0.2
COLCA1-203ENST00000532918 TERF2IPQ9NYB0 399 aa13.81□□□□□ -0.2
COLCA1-203ENST00000532918 HNRNPMP52272 730 aaKnown RBP eCLIP13.8□□□□□ -0.2
COLCA1-203ENST00000532918 NGDNQ8NEJ9 315 aaKnown RBP13.8□□□□□ -0.2
COLCA1-203ENST00000532918 GOLGA6L22H0YM25 854 aa13.79□□□□□ -0.2
COLCA1-203ENST00000532918 TRIM44Q96DX7 344 aaPredicted RBP13.79□□□□□ -0.2
COLCA1-203ENST00000532918 DDRGK1Q96HY6 314 aa13.78□□□□□ -0.2
COLCA1-203ENST00000532918 ROCK2O75116 1388 aaKnown RBP13.77□□□□□ -0.21
COLCA1-203ENST00000532918 FGD1P98174 961 aa13.76□□□□□ -0.21
COLCA1-203ENST00000532918 FRAT1Q92837 279 aaPredicted RBP13.76□□□□□ -0.21
COLCA1-203ENST00000532918 SMARCA4P51532 1647 aa13.76□□□□□ -0.21
COLCA1-203ENST00000532918 UACAQ9BZF9 1416 aa13.75□□□□□ -0.21
COLCA1-203ENST00000532918 MPHOSPH9Q99550 1183 aa13.74□□□□□ -0.21
COLCA1-203ENST00000532918 ANP32EQ9BTT0 268 aa13.74□□□□□ -0.21
COLCA1-203ENST00000532918 KCNJ4P48050 445 aa13.74□□□□□ -0.21
COLCA1-203ENST00000532918 HDAC5Q9UQL6 1122 aa13.74□□□□□ -0.21
COLCA1-203ENST00000532918 FAM69CQ0P6D2 419 aa13.74□□□□□ -0.21
COLCA1-203ENST00000532918 ERICH6BQ5W0A0 696 aa13.73□□□□□ -0.21
COLCA1-203ENST00000532918 KTN1Q86UP2 1357 aaKnown RBP13.73□□□□□ -0.21
COLCA1-203ENST00000532918 CFAP44Q96MT7 982 aa13.73□□□□□ -0.21
COLCA1-203ENST00000532918 FHOD3Q2V2M9 1422 aa13.73□□□□□ -0.21
COLCA1-203ENST00000532918 WIZO95785 1651 aa13.72□□□□□ -0.21
COLCA1-203ENST00000532918 MIER1Q8N108 512 aa13.72□□□□□ -0.21
COLCA1-203ENST00000532918 IPO8O15397 1037 aaKnown RBP13.71□□□□□ -0.21
COLCA1-203ENST00000532918 VGFO15240 615 aaPredicted RBP13.71□□□□□ -0.21
COLCA1-203ENST00000532918 ZNF330Q9Y3S2 320 aaPredicted RBP13.7□□□□□ -0.22
COLCA1-203ENST00000532918 AMPHP49418 695 aa13.69□□□□□ -0.22
COLCA1-203ENST00000532918 GAPVD1Q14C86 1478 aa13.68□□□□□ -0.22
COLCA1-203ENST00000532918 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.68□□□□□ -0.22
COLCA1-203ENST00000532918 IRX6P78412 446 aaPredicted RBP13.68□□□□□ -0.22
COLCA1-203ENST00000532918 U2AF1L5P0DN76 240 aaPredicted RBP13.68□□□□□ -0.22
COLCA1-203ENST00000532918 U2AF1Q01081 240 aaKnown RBP eCLIP13.68□□□□□ -0.22
COLCA1-203ENST00000532918 MEX3CQ5U5Q3 659 aaKnown RBP13.67□□□□□ -0.22
COLCA1-203ENST00000532918 STK31Q9BXU1 1019 aa13.67□□□□□ -0.22
COLCA1-203ENST00000532918 LMOD3Q0VAK6 560 aa13.67□□□□□ -0.22
COLCA1-203ENST00000532918 G3V3G9 751 aa13.67□□□□□ -0.22
COLCA1-203ENST00000532918 DCAF8Q5TAQ9 597 aa13.67□□□□□ -0.22
COLCA1-203ENST00000532918 KANK4Q5T7N3 995 aaPredicted RBP13.66□□□□□ -0.22
COLCA1-203ENST00000532918 NAP1L5Q96NT1 182 aaPredicted RBP13.66□□□□□ -0.22
COLCA1-203ENST00000532918 EVA1CP58658 441 aa13.66□□□□□ -0.22
COLCA1-203ENST00000532918 MCCP23508 829 aa13.66□□□□□ -0.22
COLCA1-203ENST00000532918 RALBP1Q15311 655 aa13.65□□□□□ -0.22
COLCA1-203ENST00000532918 ISY1Q9ULR0 285 aaKnown RBP13.65□□□□□ -0.22
COLCA1-203ENST00000532918 TULP1O00294 542 aaPredicted RBP13.65□□□□□ -0.22
COLCA1-203ENST00000532918 HSPA5P11021 654 aaKnown RBP13.64□□□□□ -0.23
COLCA1-203ENST00000532918 NAP1L2Q9ULW6 460 aaPredicted RBP13.64□□□□□ -0.23
COLCA1-203ENST00000532918 FOXD1Q16676 465 aa13.63□□□□□ -0.23
COLCA1-203ENST00000532918 NUTM2DQ5VT03 806 aaPredicted RBP13.63□□□□□ -0.23
COLCA1-203ENST00000532918 TAF7LQ5H9L4 462 aa13.63□□□□□ -0.23
COLCA1-203ENST00000532918 CCDC144AA2RUR9 1427 aa13.62□□□□□ -0.23
COLCA1-203ENST00000532918 NCAPD3P42695 1498 aa13.62□□□□□ -0.23
COLCA1-203ENST00000532918 GTF2E1P29083 439 aaPredicted RBP13.62□□□□□ -0.23
COLCA1-203ENST00000532918 GORABQ5T7V8 394 aa13.6□□□□□ -0.23
COLCA1-203ENST00000532918 FGD5Q6ZNL6 1462 aa13.59□□□□□ -0.23
COLCA1-203ENST00000532918 SENP3-EIF4A1A0A087X0R7 540 aa13.59□□□□□ -0.23
COLCA1-203ENST00000532918 RAB3GAP2Q9H2M9 1393 aa13.58□□□□□ -0.23
COLCA1-203ENST00000532918 EVC2Q86UK5 1308 aa13.58□□□□□ -0.23
COLCA1-203ENST00000532918 DNTTIP2Q5QJE6 756 aaKnown RBP13.58□□□□□ -0.24
COLCA1-203ENST00000532918 ATF3P18847 181 aa13.58□□□□□ -0.24
COLCA1-203ENST00000532918 TRAK1Q9UPV9 953 aa13.58□□□□□ -0.24
COLCA1-203ENST00000532918 COG3Q96JB2 828 aa13.58□□□□□ -0.24
COLCA1-203ENST00000532918 C1orf141Q5JVX7 400 aa13.57□□□□□ -0.24
COLCA1-203ENST00000532918 KIAA1211Q6ZU35 1233 aa13.57□□□□□ -0.24
COLCA1-203ENST00000532918 LTV1Q96GA3 475 aaPredicted RBP13.57□□□□□ -0.24
COLCA1-203ENST00000532918 GPATCH3Q96I76 525 aa13.57□□□□□ -0.24
COLCA1-203ENST00000532918 NUTM2FA1L443 756 aa13.57□□□□□ -0.24
COLCA1-203ENST00000532918 AMER1Q5JTC6 1135 aaPredicted RBP13.56□□□□□ -0.24
COLCA1-203ENST00000532918 RTN4Q9NQC3 1192 aaKnown RBP13.56□□□□□ -0.24
COLCA1-203ENST00000532918 TAOK2Q9UL54 1235 aa13.56□□□□□ -0.24
COLCA1-203ENST00000532918 GOLGA6L6A8MZA4 724 aa13.56□□□□□ -0.24
COLCA1-203ENST00000532918 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.56□□□□□ -0.24
COLCA1-203ENST00000532918 CCER2I3L3R5 266 aa13.56□□□□□ -0.24
COLCA1-203ENST00000532918 RGS3P49796 1198 aa13.56□□□□□ -0.24
COLCA1-203ENST00000532918 CHMP3Q9Y3E7 222 aa13.55□□□□□ -0.24
COLCA1-203ENST00000532918 GRIN2BQ13224 1484 aa13.55□□□□□ -0.24
COLCA1-203ENST00000532918 PTMAP06454 111 aaKnown RBP13.55□□□□□ -0.24
COLCA1-203ENST00000532918 SUPT16HQ9Y5B9 1047 aaKnown RBP13.55□□□□□ -0.24
COLCA1-203ENST00000532918 HSP90AB1P08238 724 aaKnown RBP13.54□□□□□ -0.24
COLCA1-203ENST00000532918 PSME1Q06323 249 aa13.54□□□□□ -0.24
COLCA1-203ENST00000532918 DCAF8L1A6NGE4 600 aa13.54□□□□□ -0.24
COLCA1-203ENST00000532918 HMMRO75330 724 aa13.54□□□□□ -0.24
COLCA1-203ENST00000532918 STAC3Q96MF2 364 aa13.54□□□□□ -0.24
COLCA1-203ENST00000532918 PPP4R2Q9NY27 417 aa13.54□□□□□ -0.24
COLCA1-203ENST00000532918 GOLGA6L4A6NEF3 574 aa13.54□□□□□ -0.24
COLCA1-203ENST00000532918 MRC2Q9UBG0 1479 aa13.54□□□□□ -0.24
COLCA1-203ENST00000532918 MSH5O43196 834 aa13.53□□□□□ -0.24
COLCA1-203ENST00000532918 GNL2Q13823 731 aaKnown RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms