RNA–Protein interactions for RNA: ENST00000528930.5

SSBP3-212, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 1 (best)

Gene SSBP3, Length 862 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-212ENST00000528930 PREX1Q8TCU6 1659 aa15.13■□□□□ 0.01
SSBP3-212ENST00000528930 CARMIL2Q6F5E8 1435 aa15.11■□□□□ 0.01
SSBP3-212ENST00000528930 PIP4P2Q8N4L2 257 aa15.11■□□□□ 0.01
SSBP3-212ENST00000528930 MED1Q15648 1581 aaPredicted RBP15.11■□□□□ 0.01
SSBP3-212ENST00000528930 LTBP4Q8N2S1 1624 aa15.1■□□□□ 0.01
SSBP3-212ENST00000528930 FRMPD1Q5SYB0 1578 aa15.09■□□□□ 0.01
SSBP3-212ENST00000528930 TTC37Q6PGP7 1564 aa15.07■□□□□ 0
SSBP3-212ENST00000528930 YEATS2Q9ULM3 1422 aa15.06■□□□□ 0
SSBP3-212ENST00000528930 ARHGEF40Q8TER5 1519 aa15.06■□□□□ 0
SSBP3-212ENST00000528930 PITPNM1O00562 1244 aa15.05■□□□□ -0
SSBP3-212ENST00000528930 SP7Q8TDD2 431 aaPredicted RBP15.05■□□□□ -0
SSBP3-212ENST00000528930 TTBK1Q5TCY1 1321 aaPredicted RBP15.05■□□□□ -0
SSBP3-212ENST00000528930 FER1L4A9Z1Z3 1794 aa15.05■□□□□ -0
SSBP3-212ENST00000528930 IQGAP2Q13576 1575 aa15.04■□□□□ -0
SSBP3-212ENST00000528930 DISP1Q96F81 1524 aa15.04■□□□□ -0
SSBP3-212ENST00000528930 SIGLEC1Q9BZZ2 1709 aa15.02□□□□□ -0.01
SSBP3-212ENST00000528930 PTPRTO14522 1441 aa14.99□□□□□ -0.01
SSBP3-212ENST00000528930 PHLDB1Q86UU1 1377 aa14.98□□□□□ -0.01
SSBP3-212ENST00000528930 ABCA9Q8IUA7 1624 aa14.95□□□□□ -0.02
SSBP3-212ENST00000528930 RICTORQ6R327 1708 aa14.95□□□□□ -0.02
SSBP3-212ENST00000528930 KIAA0556O60303 1618 aa14.95□□□□□ -0.02
SSBP3-212ENST00000528930 ARID4BQ4LE39 1312 aaPredicted RBP14.94□□□□□ -0.02
SSBP3-212ENST00000528930 HAX1O00165 279 aa14.94□□□□□ -0.02
SSBP3-212ENST00000528930 ATXN8OSP0DMR3 200 aa14.94□□□□□ -0.02
SSBP3-212ENST00000528930 FXR2P51116 673 aaKnown RBP eCLIP14.93□□□□□ -0.02
SSBP3-212ENST00000528930 SETD1BQ9UPS6 1966 aaKnown RBP14.93□□□□□ -0.02
SSBP3-212ENST00000528930 UGGT2Q9NYU1 1516 aa14.92□□□□□ -0.02
SSBP3-212ENST00000528930 FANCAO15360 1455 aa14.91□□□□□ -0.02
SSBP3-212ENST00000528930 NEO1Q92859 1461 aa14.91□□□□□ -0.02
SSBP3-212ENST00000528930 IGF1RP08069 1367 aa14.89□□□□□ -0.03
SSBP3-212ENST00000528930 RAPGEF3O95398 923 aa14.89□□□□□ -0.03
SSBP3-212ENST00000528930 POGZQ7Z3K3 1410 aa14.89□□□□□ -0.03
SSBP3-212ENST00000528930 ABCA8O94911 1581 aa14.89□□□□□ -0.03
SSBP3-212ENST00000528930 KCNH8Q96L42 1107 aa14.85□□□□□ -0.03
SSBP3-212ENST00000528930 ZMYM4Q5VZL5 1548 aa14.85□□□□□ -0.03
SSBP3-212ENST00000528930 ARHGEF12Q9NZN5 1544 aa14.85□□□□□ -0.03
SSBP3-212ENST00000528930 UHRF1BP1Q6BDS2 1440 aa14.83□□□□□ -0.04
SSBP3-212ENST00000528930 SPDYE2BA6NHP3 402 aa14.81□□□□□ -0.04
SSBP3-212ENST00000528930 SPDYE6P0CI01 402 aa14.81□□□□□ -0.04
SSBP3-212ENST00000528930 SPDYE2Q495Y8 402 aa14.81□□□□□ -0.04
SSBP3-212ENST00000528930 AKNAQ7Z591 1439 aa14.8□□□□□ -0.04
SSBP3-212ENST00000528930 EFCAB5A4FU69 1503 aa14.8□□□□□ -0.04
SSBP3-212ENST00000528930 UBAP1LF5GYI3 381 aa14.79□□□□□ -0.04
SSBP3-212ENST00000528930 EVX2Q03828 476 aa14.79□□□□□ -0.04
SSBP3-212ENST00000528930 MKRN4PQ13434 485 aaPredicted RBP14.79□□□□□ -0.04
SSBP3-212ENST00000528930 ZFYVE16Q7Z3T8 1539 aa14.79□□□□□ -0.04
SSBP3-212ENST00000528930 FHOD3Q2V2M9 1422 aa14.77□□□□□ -0.04
SSBP3-212ENST00000528930 NCOA1Q15788 1441 aa14.76□□□□□ -0.05
SSBP3-212ENST00000528930 KIF27Q86VH2 1401 aa14.76□□□□□ -0.05
SSBP3-212ENST00000528930 CLEC11AQ9Y240 323 aa14.75□□□□□ -0.05
SSBP3-212ENST00000528930 CARMIL1Q5VZK9 1371 aa14.74□□□□□ -0.05
SSBP3-212ENST00000528930 HSPA1LP34931 641 aa14.74□□□□□ -0.05
SSBP3-212ENST00000528930 DENND4BO75064 1496 aaPredicted RBP14.74□□□□□ -0.05
SSBP3-212ENST00000528930 C3P01024 1663 aa14.74□□□□□ -0.05
SSBP3-212ENST00000528930 CFAP74Q9C0B2 1584 aa14.73□□□□□ -0.05
SSBP3-212ENST00000528930 MAGI2Q86UL8 1455 aa14.72□□□□□ -0.05
SSBP3-212ENST00000528930 HECW1Q76N89 1606 aa14.69□□□□□ -0.06
SSBP3-212ENST00000528930 CTTNBP2Q8WZ74 1663 aa14.68□□□□□ -0.06
SSBP3-212ENST00000528930 PRKAR2AP13861 404 aaKnown RBP14.67□□□□□ -0.06
SSBP3-212ENST00000528930 CEBPAP49715 358 aaPredicted RBP14.67□□□□□ -0.06
SSBP3-212ENST00000528930 ZNF692Q9BU19 519 aaPredicted RBP14.67□□□□□ -0.06
SSBP3-212ENST00000528930 ZNF335Q9H4Z2 1342 aaPredicted RBP14.66□□□□□ -0.06
SSBP3-212ENST00000528930 ATP10BO94823 1461 aa14.65□□□□□ -0.06
SSBP3-212ENST00000528930 MLECQ14165 292 aa14.65□□□□□ -0.06
SSBP3-212ENST00000528930 CAMSAP1Q5T5Y3 1602 aa14.65□□□□□ -0.06
SSBP3-212ENST00000528930 SPDYE1Q8NFV5 336 aaPredicted RBP14.64□□□□□ -0.07
SSBP3-212ENST00000528930 SETD1AO15047 1707 aaKnown RBP14.63□□□□□ -0.07
SSBP3-212ENST00000528930 ALKQ9UM73 1620 aa14.63□□□□□ -0.07
SSBP3-212ENST00000528930 GOLGA3Q08378 1498 aa14.62□□□□□ -0.07
SSBP3-212ENST00000528930 C9orf84Q5VXU9 1444 aa14.61□□□□□ -0.07
SSBP3-212ENST00000528930 RGS17Q9UGC6 210 aaPredicted RBP14.6□□□□□ -0.07
SSBP3-212ENST00000528930 SUPT6HQ7KZ85 1726 aaKnown RBP14.6□□□□□ -0.07
SSBP3-212ENST00000528930 ZNF142P52746 1687 aaPredicted RBP14.59□□□□□ -0.07
SSBP3-212ENST00000528930 ATP10AO60312 1499 aa14.59□□□□□ -0.07
SSBP3-212ENST00000528930 SSUH2Q9Y2M2 353 aa14.59□□□□□ -0.07
SSBP3-212ENST00000528930 TRAPPC8Q9Y2L5 1435 aa14.57□□□□□ -0.08
SSBP3-212ENST00000528930 PLA2R1Q13018 1463 aa14.54□□□□□ -0.08
SSBP3-212ENST00000528930 RAPGEF2Q9Y4G8 1499 aa14.54□□□□□ -0.08
SSBP3-212ENST00000528930 REREQ9P2R6 1566 aa14.54□□□□□ -0.08
SSBP3-212ENST00000528930 CPS1P31327 1500 aa14.53□□□□□ -0.08
SSBP3-212ENST00000528930 TCOF1Q13428 1488 aaKnown RBP14.53□□□□□ -0.08
SSBP3-212ENST00000528930 PIP4K2BP78356 416 aa14.53□□□□□ -0.08
SSBP3-212ENST00000528930 TOM1O60784 492 aa14.52□□□□□ -0.09
SSBP3-212ENST00000528930 CHADLQ6NUI6 762 aa14.52□□□□□ -0.09
SSBP3-212ENST00000528930 MROH2AA6NES4 1674 aa14.52□□□□□ -0.09
SSBP3-212ENST00000528930 MYO3AQ8NEV4 1616 aa14.49□□□□□ -0.09
SSBP3-212ENST00000528930 RAPGEF6Q8TEU7 1601 aa14.49□□□□□ -0.09
SSBP3-212ENST00000528930 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.49□□□□□ -0.09
SSBP3-212ENST00000528930 AGLP35573 1532 aa14.48□□□□□ -0.09
SSBP3-212ENST00000528930 NCKAP5LQ9HCH0 1330 aa14.47□□□□□ -0.09
SSBP3-212ENST00000528930 POLR1AO95602 1720 aaPredicted RBP14.47□□□□□ -0.09
SSBP3-212ENST00000528930 NPATQ14207 1427 aa14.47□□□□□ -0.09
SSBP3-212ENST00000528930 DIP2CQ9Y2E4 1556 aa14.47□□□□□ -0.09
SSBP3-212ENST00000528930 C19orf67A6NJJ6 358 aa14.46□□□□□ -0.09
SSBP3-212ENST00000528930 ARID3CA6NKF2 412 aa14.46□□□□□ -0.09
SSBP3-212ENST00000528930 PTPRKQ15262 1439 aa14.46□□□□□ -0.09
SSBP3-212ENST00000528930 KDM5CP41229 1560 aa14.44□□□□□ -0.1
SSBP3-212ENST00000528930 PKD2Q13563 968 aa14.44□□□□□ -0.1
SSBP3-212ENST00000528930 POTEAQ6S8J7 498 aa14.44□□□□□ -0.1
SSBP3-212ENST00000528930 CEP170BQ9Y4F5 1589 aaPredicted RBP14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms