RNA–Protein interactions for RNA: ENST00000526627.1

SMIM3-201, Transcript of small integral membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMIM3, Length 2,332 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM3-201ENST00000526627 ANP32CO43423 234 aa28.79■■■□□ 2.2
SMIM3-201ENST00000526627 CDK11AQ9UQ88 783 aaPredicted RBP28.77■■■□□ 2.2
SMIM3-201ENST00000526627 TROQ12816 1431 aaPredicted RBP28.77■■■□□ 2.2
SMIM3-201ENST00000526627 PRG4Q92954 1404 aaPredicted RBP28.77■■■□□ 2.2
SMIM3-201ENST00000526627 PLB1Q6P1J6 1458 aa28.76■■■□□ 2.19
SMIM3-201ENST00000526627 CHMP7Q8WUX9 453 aaPredicted RBP28.76■■■□□ 2.19
SMIM3-201ENST00000526627 NUP160Q12769 1436 aa28.73■■■□□ 2.19
SMIM3-201ENST00000526627 FOXD1Q16676 465 aa28.72■■■□□ 2.19
SMIM3-201ENST00000526627 ANKRD30BQ9BXX2 1392 aa28.72■■■□□ 2.19
SMIM3-201ENST00000526627 ADCY10Q96PN6 1610 aa28.7■■■□□ 2.19
SMIM3-201ENST00000526627 HSPA5P11021 654 aaKnown RBP28.69■■■□□ 2.18
SMIM3-201ENST00000526627 L3MBTL2Q969R5 705 aa28.69■■■□□ 2.18
SMIM3-201ENST00000526627 CAMSAP2Q08AD1 1489 aa28.68■■■□□ 2.18
SMIM3-201ENST00000526627 GPATCH8Q9UKJ3 1502 aaKnown RBP28.68■■■□□ 2.18
SMIM3-201ENST00000526627 KIF14Q15058 1648 aa28.68■■■□□ 2.18
SMIM3-201ENST00000526627 ITSN2Q9NZM3 1697 aa28.67■■■□□ 2.18
SMIM3-201ENST00000526627 RPRD2Q5VT52 1461 aaKnown RBP28.66■■■□□ 2.18
SMIM3-201ENST00000526627 WASHC2AQ641Q2 1341 aa28.65■■■□□ 2.18
SMIM3-201ENST00000526627 JPH4Q96JJ6 628 aa28.65■■■□□ 2.18
SMIM3-201ENST00000526627 CARMIL2Q6F5E8 1435 aa28.64■■■□□ 2.18
SMIM3-201ENST00000526627 FBLN2P98095 1184 aa28.63■■■□□ 2.17
SMIM3-201ENST00000526627 TEX14Q8IWB6 1497 aa28.63■■■□□ 2.17
SMIM3-201ENST00000526627 CFDP1Q9UEE9 299 aaPredicted RBP28.61■■■□□ 2.17
SMIM3-201ENST00000526627 ADGBQ8N7X0 1667 aa28.6■■■□□ 2.17
SMIM3-201ENST00000526627 NCOA1Q15788 1441 aa28.6■■■□□ 2.17
SMIM3-201ENST00000526627 PZPP20742 1482 aa28.59■■■□□ 2.17
SMIM3-201ENST00000526627 EIF4G2P78344 907 aaKnown RBP eCLIP28.59■■■□□ 2.17
SMIM3-201ENST00000526627 CROCC2H7BZ55 1655 aa28.58■■■□□ 2.17
SMIM3-201ENST00000526627 ADGRL2O95490 1459 aa28.58■■■□□ 2.17
SMIM3-201ENST00000526627 ABCA8O94911 1581 aa28.58■■■□□ 2.17
SMIM3-201ENST00000526627 SLC4A1APQ9BWU0 796 aaKnown RBP28.57■■■□□ 2.16
SMIM3-201ENST00000526627 NBPF8Q3BBV2 869 aa28.55■■■□□ 2.16
SMIM3-201ENST00000526627 ABCC10Q5T3U5 1492 aa28.5■■■□□ 2.15
SMIM3-201ENST00000526627 CDC42BPAQ5VT25 1732 aa28.49■■■□□ 2.15
SMIM3-201ENST00000526627 ATP10BO94823 1461 aa28.49■■■□□ 2.15
SMIM3-201ENST00000526627 C11orf95C9JLR9 678 aaPredicted RBP28.49■■■□□ 2.15
SMIM3-201ENST00000526627 ZNF777Q9ULD5 760 aaPredicted RBP28.48■■■□□ 2.15
SMIM3-201ENST00000526627 CNTLNQ9NXG0 1405 aa28.47■■■□□ 2.15
SMIM3-201ENST00000526627 SPATA31E1Q6ZUB1 1445 aa28.45■■■□□ 2.15
SMIM3-201ENST00000526627 CCDC7Q96M83 1385 aa28.45■■■□□ 2.15
SMIM3-201ENST00000526627 ANKRD30AQ9BXX3 1397 aa28.44■■■□□ 2.14
SMIM3-201ENST00000526627 FKBP8Q14318 412 aa28.43■■■□□ 2.14
SMIM3-201ENST00000526627 PLEKHD1A6NEE1 506 aa28.43■■■□□ 2.14
SMIM3-201ENST00000526627 KIAA1107Q9UPP5 1409 aa28.42■■■□□ 2.14
SMIM3-201ENST00000526627 MBD5Q9P267 1494 aa28.41■■■□□ 2.14
SMIM3-201ENST00000526627 SHANK2Q9UPX8 1470 aa28.39■■■□□ 2.14
SMIM3-201ENST00000526627 ANKRD50Q9ULJ7 1429 aa28.39■■■□□ 2.14
SMIM3-201ENST00000526627 POLR1AO95602 1720 aaPredicted RBP28.37■■■□□ 2.13
SMIM3-201ENST00000526627 BCANQ96GW7 911 aa28.35■■■□□ 2.13
SMIM3-201ENST00000526627 C9orf84Q5VXU9 1444 aa28.34■■■□□ 2.13
SMIM3-201ENST00000526627 PKD2Q13563 968 aa28.34■■■□□ 2.13
SMIM3-201ENST00000526627 TSHZ2Q9NRE2 1034 aa28.34■■■□□ 2.13
SMIM3-201ENST00000526627 KIF7Q2M1P5 1343 aa28.31■■■□□ 2.12
SMIM3-201ENST00000526627 CCDC184Q52MB2 194 aa28.3■■■□□ 2.12
SMIM3-201ENST00000526627 HNRNPUQ00839 825 aaKnown RBP eCLIP28.29■■■□□ 2.12
SMIM3-201ENST00000526627 PRKRIP1Q9H875 184 aaPredicted RBP28.29■■■□□ 2.12
SMIM3-201ENST00000526627 PTPRGP23470 1445 aa28.28■■■□□ 2.12
SMIM3-201ENST00000526627 KDM5DQ9BY66 1539 aa28.27■■■□□ 2.12
SMIM3-201ENST00000526627 ARHGEF5Q12774 1597 aa28.27■■■□□ 2.12
SMIM3-201ENST00000526627 NEFLP07196 543 aa28.26■■■□□ 2.12
SMIM3-201ENST00000526627 NUP155O75694 1391 aa28.24■■■□□ 2.11
SMIM3-201ENST00000526627 HNRNPMP52272 730 aaKnown RBP eCLIP28.21■■■□□ 2.11
SMIM3-201ENST00000526627 SAMD9LQ8IVG5 1584 aa28.21■■■□□ 2.11
SMIM3-201ENST00000526627 CDC42BPBQ9Y5S2 1711 aa28.21■■■□□ 2.11
SMIM3-201ENST00000526627 BCORL1Q5H9F3 1711 aa28.2■■■□□ 2.1
SMIM3-201ENST00000526627 TSPY4P0CV99 314 aa28.2■■■□□ 2.1
SMIM3-201ENST00000526627 TSPY10P0CW01 314 aa28.2■■■□□ 2.1
SMIM3-201ENST00000526627 CHD1O14646 1710 aa28.19■■■□□ 2.1
SMIM3-201ENST00000526627 UHRF1BP1Q6BDS2 1440 aa28.19■■■□□ 2.1
SMIM3-201ENST00000526627 PREX2Q70Z35 1606 aa28.19■■■□□ 2.1
SMIM3-201ENST00000526627 KIF15Q9NS87 1388 aa28.19■■■□□ 2.1
SMIM3-201ENST00000526627 USP47Q96K76 1375 aa28.18■■■□□ 2.1
SMIM3-201ENST00000526627 KDM5CP41229 1560 aa28.18■■■□□ 2.1
SMIM3-201ENST00000526627 SHROOM2Q13796 1616 aa28.14■■■□□ 2.1
SMIM3-201ENST00000526627 CCDC141Q6ZP82 1450 aa28.14■■■□□ 2.1
SMIM3-201ENST00000526627 ARHGEF12Q9NZN5 1544 aa28.14■■■□□ 2.09
SMIM3-201ENST00000526627 RALGAPBQ86X10 1494 aa28.13■■■□□ 2.09
SMIM3-201ENST00000526627 ZNF326Q5BKZ1 582 aaKnown RBP28.12■■■□□ 2.09
SMIM3-201ENST00000526627 DHX29Q7Z478 1369 aaKnown RBP28.12■■■□□ 2.09
SMIM3-201ENST00000526627 MRS2Q9HD23 443 aa28.1■■■□□ 2.09
SMIM3-201ENST00000526627 TTC37Q6PGP7 1564 aa28.07■■■□□ 2.08
SMIM3-201ENST00000526627 RSPH4AQ5TD94 716 aa28.05■■■□□ 2.08
SMIM3-201ENST00000526627 FAM9BQ8IZU0 186 aa28.05■■■□□ 2.08
SMIM3-201ENST00000526627 FAM135AQ9P2D6 1515 aa28.05■■■□□ 2.08
SMIM3-201ENST00000526627 ARID4BQ4LE39 1312 aaPredicted RBP28.04■■■□□ 2.08
SMIM3-201ENST00000526627 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.04■■■□□ 2.08
SMIM3-201ENST00000526627 SYCP2Q9BX26 1530 aa28.04■■■□□ 2.08
SMIM3-201ENST00000526627 MAST1Q9Y2H9 1570 aa28.03■■■□□ 2.08
SMIM3-201ENST00000526627 ERCC6L2Q5T890 1561 aa28.03■■■□□ 2.08
SMIM3-201ENST00000526627 ABCC2Q92887 1545 aa28■■■□□ 2.07
SMIM3-201ENST00000526627 ZBED9Q6R2W3 1325 aa27.99■■■□□ 2.07
SMIM3-201ENST00000526627 ARHGAP5Q13017 1502 aa27.99■■■□□ 2.07
SMIM3-201ENST00000526627 CARD11Q9BXL7 1154 aa27.97■■■□□ 2.07
SMIM3-201ENST00000526627 UNC13BO14795 1591 aa27.97■■■□□ 2.07
SMIM3-201ENST00000526627 KDM2AQ9Y2K7 1162 aa27.95■■■□□ 2.07
SMIM3-201ENST00000526627 DCAF11Q8TEB1 546 aa27.94■■■□□ 2.06
SMIM3-201ENST00000526627 MYO5CQ9NQX4 1742 aa27.94■■■□□ 2.06
SMIM3-201ENST00000526627 IRX6P78412 446 aaPredicted RBP27.93■■■□□ 2.06
SMIM3-201ENST00000526627 POLR3GLQ9BT43 218 aa27.93■■■□□ 2.06
SMIM3-201ENST00000526627 ROCK2O75116 1388 aaKnown RBP27.92■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms