RNA–Protein interactions for RNA: ENST00000522843.5

SDCBP-210, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 764 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-210ENST00000522843 ERCC6Q03468 1493 aa13.93□□□□□ -0.18
SDCBP-210ENST00000522843 ZNF710Q8N1W2 664 aa13.9□□□□□ -0.18
SDCBP-210ENST00000522843 KRTAP3-3Q9BYR6 98 aa13.9□□□□□ -0.18
SDCBP-210ENST00000522843 KRTAP3-2Q9BYR7 98 aa13.9□□□□□ -0.18
SDCBP-210ENST00000522843 HOXB1P14653 301 aaPredicted RBP13.88□□□□□ -0.19
SDCBP-210ENST00000522843 DOK7Q18PE1 504 aa13.88□□□□□ -0.19
SDCBP-210ENST00000522843 RIOK3O14730 519 aaKnown RBP13.87□□□□□ -0.19
SDCBP-210ENST00000522843 SOX12O15370 315 aa13.86□□□□□ -0.19
SDCBP-210ENST00000522843 NCAPD3P42695 1498 aa13.82□□□□□ -0.2
SDCBP-210ENST00000522843 MICALL2Q8IY33 904 aa13.82□□□□□ -0.2
SDCBP-210ENST00000522843 RNF25Q96BH1 459 aaPredicted RBP13.82□□□□□ -0.2
SDCBP-210ENST00000522843 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.81□□□□□ -0.2
SDCBP-210ENST00000522843 RIMBP2O15034 1052 aa13.81□□□□□ -0.2
SDCBP-210ENST00000522843 ZFP91Q96JP5 570 aaPredicted RBP13.81□□□□□ -0.2
SDCBP-210ENST00000522843 NESP48681 1621 aa13.8□□□□□ -0.2
SDCBP-210ENST00000522843 VGFO15240 615 aaPredicted RBP13.8□□□□□ -0.2
SDCBP-210ENST00000522843 ERBB3P21860 1342 aa13.8□□□□□ -0.2
SDCBP-210ENST00000522843 TMEM92Q6UXU6 159 aa13.77□□□□□ -0.21
SDCBP-210ENST00000522843 MS4A4AQ96JQ5 239 aa13.77□□□□□ -0.21
SDCBP-210ENST00000522843 PHF8Q9UPP1 1060 aa13.75□□□□□ -0.21
SDCBP-210ENST00000522843 ZSWIM6Q9HCJ5 1215 aa13.74□□□□□ -0.21
SDCBP-210ENST00000522843 THOC2Q8NI27 1593 aaKnown RBP13.73□□□□□ -0.21
SDCBP-210ENST00000522843 ATAD2BQ9ULI0 1458 aa13.73□□□□□ -0.21
SDCBP-210ENST00000522843 VARS2Q5ST30 1063 aaKnown RBP13.69□□□□□ -0.22
SDCBP-210ENST00000522843 GPR153Q6NV75 609 aa13.67□□□□□ -0.22
SDCBP-210ENST00000522843 TAOK2Q9UL54 1235 aa13.67□□□□□ -0.22
SDCBP-210ENST00000522843 NLRP6P59044 892 aa13.66□□□□□ -0.22
SDCBP-210ENST00000522843 HMGXB3Q12766 1538 aa13.65□□□□□ -0.22
SDCBP-210ENST00000522843 ZNF687Q8N1G0 1237 aa13.63□□□□□ -0.23
SDCBP-210ENST00000522843 BCL11BQ9C0K0 894 aaPredicted RBP13.63□□□□□ -0.23
SDCBP-210ENST00000522843 FBXO22Q8NEZ5 403 aa13.61□□□□□ -0.23
SDCBP-210ENST00000522843 SMARCA2P51531 1590 aa13.6□□□□□ -0.23
SDCBP-210ENST00000522843 STK24Q9Y6E0 443 aa13.59□□□□□ -0.23
SDCBP-210ENST00000522843 SMARCA4P51532 1647 aa13.57□□□□□ -0.24
SDCBP-210ENST00000522843 ARSIQ5FYB1 569 aa13.57□□□□□ -0.24
SDCBP-210ENST00000522843 KIF21AQ7Z4S6 1674 aa13.56□□□□□ -0.24
SDCBP-210ENST00000522843 RNF166Q96A37 237 aaPredicted RBP13.55□□□□□ -0.24
SDCBP-210ENST00000522843 LAMC3Q9Y6N6 1575 aa13.54□□□□□ -0.24
SDCBP-210ENST00000522843 MFRPQ9BY79 579 aa13.54□□□□□ -0.24
SDCBP-210ENST00000522843 STK25O00506 426 aa13.52□□□□□ -0.25
SDCBP-210ENST00000522843 MYT1LQ9UL68 1186 aa13.52□□□□□ -0.25
SDCBP-210ENST00000522843 BAZ1BQ9UIG0 1483 aaKnown RBP13.52□□□□□ -0.25
SDCBP-210ENST00000522843 ECM2O94769 699 aaPredicted RBP13.5□□□□□ -0.25
SDCBP-210ENST00000522843 ZNF316A6NFI3 1004 aaPredicted RBP13.49□□□□□ -0.25
SDCBP-210ENST00000522843 KHSRPQ92945 711 aaKnown RBP eCLIP13.49□□□□□ -0.25
SDCBP-210ENST00000522843 KIF3CO14782 793 aa13.47□□□□□ -0.25
SDCBP-210ENST00000522843 PDS5BQ9NTI5 1447 aa13.47□□□□□ -0.25
SDCBP-210ENST00000522843 PEG3Q9GZU2 1588 aa13.45□□□□□ -0.26
SDCBP-210ENST00000522843 C2orf72A6NCS6 295 aa13.45□□□□□ -0.26
SDCBP-210ENST00000522843 PTGER2P43116 358 aa13.45□□□□□ -0.26
SDCBP-210ENST00000522843 ANKRD13DQ6ZTN6 518 aa13.43□□□□□ -0.26
SDCBP-210ENST00000522843 BAZ1AQ9NRL2 1556 aaPredicted RBP13.42□□□□□ -0.26
SDCBP-210ENST00000522843 WDR62O43379 1518 aa13.42□□□□□ -0.26
SDCBP-210ENST00000522843 MRC2Q9UBG0 1479 aa13.42□□□□□ -0.26
SDCBP-210ENST00000522843 RGL2O15211 777 aa13.38□□□□□ -0.27
SDCBP-210ENST00000522843 NUDT7P0C024 238 aa13.38□□□□□ -0.27
SDCBP-210ENST00000522843 PKD2Q13563 968 aa13.38□□□□□ -0.27
SDCBP-210ENST00000522843 SLC34A2O95436 690 aa13.37□□□□□ -0.27
SDCBP-210ENST00000522843 LSM11P83369 360 aaKnown RBP eCLIP13.37□□□□□ -0.27
SDCBP-210ENST00000522843 CADPSQ9ULU8 1353 aa13.36□□□□□ -0.27
SDCBP-210ENST00000522843 TMC2Q8TDI7 906 aa13.36□□□□□ -0.27
SDCBP-210ENST00000522843 PCDHGA4Q9Y5G9 962 aa13.35□□□□□ -0.27
SDCBP-210ENST00000522843 MROH2BQ7Z745 1585 aa13.35□□□□□ -0.27
SDCBP-210ENST00000522843 PBX2P40425 430 aa13.33□□□□□ -0.28
SDCBP-210ENST00000522843 LHX6Q9UPM6 363 aa13.33□□□□□ -0.28
SDCBP-210ENST00000522843 RIMBP3CA6NJZ7 1639 aa13.28□□□□□ -0.28
SDCBP-210ENST00000522843 RIMBP3BA6NNM3 1639 aa13.28□□□□□ -0.28
SDCBP-210ENST00000522843 RIMBP3Q9UFD9 1639 aa13.28□□□□□ -0.28
SDCBP-210ENST00000522843 PPP1R37O75864 691 aa13.28□□□□□ -0.28
SDCBP-210ENST00000522843 POTEEQ6S8J3 1075 aa13.27□□□□□ -0.29
SDCBP-210ENST00000522843 CEP164Q9UPV0 1460 aa13.25□□□□□ -0.29
SDCBP-210ENST00000522843 AXIN2Q9Y2T1 843 aa13.25□□□□□ -0.29
SDCBP-210ENST00000522843 FANCD2Q9BXW9 1451 aa13.22□□□□□ -0.29
SDCBP-210ENST00000522843 PSDA5PKW4 1024 aaPredicted RBP13.21□□□□□ -0.29
SDCBP-210ENST00000522843 ARHGEF11O15085 1522 aa13.19□□□□□ -0.3
SDCBP-210ENST00000522843 ARHGAP33O14559 1287 aa13.19□□□□□ -0.3
SDCBP-210ENST00000522843 PTCD2Q8WV60 388 aaKnown RBP13.19□□□□□ -0.3
SDCBP-210ENST00000522843 URB2Q14146 1524 aaKnown RBP13.18□□□□□ -0.3
SDCBP-210ENST00000522843 KDM4FA0A1W2PPD8 638 aa13.18□□□□□ -0.3
SDCBP-210ENST00000522843 FOXK1P85037 733 aa13.16□□□□□ -0.3
SDCBP-210ENST00000522843 WIZO95785 1651 aa13.15□□□□□ -0.31
SDCBP-210ENST00000522843 ADGRD1Q6QNK2 874 aa13.14□□□□□ -0.31
SDCBP-210ENST00000522843 PLPP6Q8IY26 295 aa13.14□□□□□ -0.31
SDCBP-210ENST00000522843 GPHNQ9NQX3 736 aaPredicted RBP13.14□□□□□ -0.31
SDCBP-210ENST00000522843 CFTRP13569 1480 aa13.13□□□□□ -0.31
SDCBP-210ENST00000522843 HCSTQ9UBK5 93 aa13.12□□□□□ -0.31
SDCBP-210ENST00000522843 HS6ST3Q8IZP7 471 aa13.11□□□□□ -0.31
SDCBP-210ENST00000522843 ZNF608Q9ULD9 1512 aaPredicted RBP13.11□□□□□ -0.31
SDCBP-210ENST00000522843 CYB5RLQ6IPT4 315 aa13.1□□□□□ -0.31
SDCBP-210ENST00000522843 TK2O00142 265 aa13.09□□□□□ -0.31
SDCBP-210ENST00000522843 TBC1D12O60347 775 aa13.09□□□□□ -0.31
SDCBP-210ENST00000522843 DSG2Q14126 1118 aa13.08□□□□□ -0.32
SDCBP-210ENST00000522843 PSEN2P49810 448 aa13.06□□□□□ -0.32
SDCBP-210ENST00000522843 PPP4R3BQ5MIZ7 849 aa13.06□□□□□ -0.32
SDCBP-210ENST00000522843 DMRTA1Q5VZB9 504 aa13.06□□□□□ -0.32
SDCBP-210ENST00000522843 PLA2G2EQ9NZK7 142 aa13.06□□□□□ -0.32
SDCBP-210ENST00000522843 ARAP1Q96P48 1450 aa13.05□□□□□ -0.32
SDCBP-210ENST00000522843 HRO43593 1189 aa13.04□□□□□ -0.32
SDCBP-210ENST00000522843 CHGAP10645 457 aaKnown RBP13.01□□□□□ -0.33
SDCBP-210ENST00000522843 IFT140Q96RY7 1462 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 133.1 ms