RNA–Protein interactions for RNA: ENST00000521122.1

PVT1-210, Transcript of Pvt1 oncogene, humanhuman

TSL 3

Gene PVT1, Length 221 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-210ENST00000521122 ZMYM4Q5VZL5 1548 aa16.12■□□□□ 0.17
PVT1-210ENST00000521122 TOM1O60784 492 aa16.11■□□□□ 0.17
PVT1-210ENST00000521122 KIF27Q86VH2 1401 aa16.09■□□□□ 0.17
PVT1-210ENST00000521122 MAGI2Q86UL8 1455 aa16.09■□□□□ 0.17
PVT1-210ENST00000521122 CAMSAP1Q5T5Y3 1602 aa16.03■□□□□ 0.16
PVT1-210ENST00000521122 POTEAQ6S8J7 498 aa16.02■□□□□ 0.16
PVT1-210ENST00000521122 TRAPPC8Q9Y2L5 1435 aa16.01■□□□□ 0.15
PVT1-210ENST00000521122 NCKAP5LQ9HCH0 1330 aa16■□□□□ 0.15
PVT1-210ENST00000521122 ATP10BO94823 1461 aa15.99■□□□□ 0.15
PVT1-210ENST00000521122 C3P01024 1663 aa15.99■□□□□ 0.15
PVT1-210ENST00000521122 ATP10AO60312 1499 aa15.98■□□□□ 0.15
PVT1-210ENST00000521122 SETD1AO15047 1707 aaKnown RBP15.98■□□□□ 0.15
PVT1-210ENST00000521122 C9orf84Q5VXU9 1444 aa15.98■□□□□ 0.15
PVT1-210ENST00000521122 HECW1Q76N89 1606 aa15.97■□□□□ 0.15
PVT1-210ENST00000521122 ARID3CA6NKF2 412 aa15.95■□□□□ 0.14
PVT1-210ENST00000521122 CFAP74Q9C0B2 1584 aa15.95■□□□□ 0.14
PVT1-210ENST00000521122 PKD2Q13563 968 aa15.94■□□□□ 0.14
PVT1-210ENST00000521122 ALKQ9UM73 1620 aa15.94■□□□□ 0.14
PVT1-210ENST00000521122 PTPRKQ15262 1439 aa15.94■□□□□ 0.14
PVT1-210ENST00000521122 UPF1Q92900 1129 aaKnown RBP eCLIP15.93■□□□□ 0.14
PVT1-210ENST00000521122 CPS1P31327 1500 aa15.93■□□□□ 0.14
PVT1-210ENST00000521122 GOLGA3Q08378 1498 aa15.91■□□□□ 0.14
PVT1-210ENST00000521122 PPP6R1Q9UPN7 881 aa15.91■□□□□ 0.14
PVT1-210ENST00000521122 PLA2R1Q13018 1463 aa15.91■□□□□ 0.14
PVT1-210ENST00000521122 TCOF1Q13428 1488 aaKnown RBP15.9■□□□□ 0.14
PVT1-210ENST00000521122 SENP3Q9H4L4 574 aaPredicted RBP15.88■□□□□ 0.13
PVT1-210ENST00000521122 RAPGEF2Q9Y4G8 1499 aa15.86■□□□□ 0.13
PVT1-210ENST00000521122 NPATQ14207 1427 aa15.83■□□□□ 0.12
PVT1-210ENST00000521122 ESF1Q9H501 851 aaKnown RBP15.82■□□□□ 0.12
PVT1-210ENST00000521122 SHANK2Q9UPX8 1470 aa15.82■□□□□ 0.12
PVT1-210ENST00000521122 SCAPERQ9BY12 1400 aa15.81■□□□□ 0.12
PVT1-210ENST00000521122 ZNF142P52746 1687 aaPredicted RBP15.79■□□□□ 0.12
PVT1-210ENST00000521122 CNTLNQ9NXG0 1405 aa15.78■□□□□ 0.12
PVT1-210ENST00000521122 FAM9AQ8IZU1 332 aaPredicted RBP15.78■□□□□ 0.12
PVT1-210ENST00000521122 AGLP35573 1532 aa15.78■□□□□ 0.12
PVT1-210ENST00000521122 SUPT6HQ7KZ85 1726 aaKnown RBP15.77■□□□□ 0.11
PVT1-210ENST00000521122 REREQ9P2R6 1566 aa15.75■□□□□ 0.11
PVT1-210ENST00000521122 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP15.75■□□□□ 0.11
PVT1-210ENST00000521122 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.75■□□□□ 0.11
PVT1-210ENST00000521122 HNRNPUL2Q1KMD3 747 aaKnown RBP15.75■□□□□ 0.11
PVT1-210ENST00000521122 CTTNBP2Q8WZ74 1663 aa15.73■□□□□ 0.11
PVT1-210ENST00000521122 CEP170BQ9Y4F5 1589 aaPredicted RBP15.73■□□□□ 0.11
PVT1-210ENST00000521122 MYO3AQ8NEV4 1616 aa15.72■□□□□ 0.11
PVT1-210ENST00000521122 DIP2CQ9Y2E4 1556 aa15.7■□□□□ 0.1
PVT1-210ENST00000521122 MROH2AA6NES4 1674 aa15.7■□□□□ 0.1
PVT1-210ENST00000521122 RNF17Q9BXT8 1623 aaKnown RBP15.69■□□□□ 0.1
PVT1-210ENST00000521122 VWDEQ8N2E2 1590 aa15.69■□□□□ 0.1
PVT1-210ENST00000521122 PLEKHD1A6NEE1 506 aa15.67■□□□□ 0.1
PVT1-210ENST00000521122 RAPGEF6Q8TEU7 1601 aa15.67■□□□□ 0.1
PVT1-210ENST00000521122 NEURL4Q96JN8 1562 aa15.66■□□□□ 0.1
PVT1-210ENST00000521122 ZNF518AQ6AHZ1 1483 aa15.66■□□□□ 0.1
PVT1-210ENST00000521122 ZMYM3Q14202 1370 aa15.66■□□□□ 0.1
PVT1-210ENST00000521122 KDM5CP41229 1560 aa15.66■□□□□ 0.1
PVT1-210ENST00000521122 PLCH2O75038 1416 aa15.64■□□□□ 0.09
PVT1-210ENST00000521122 POLR1AO95602 1720 aaPredicted RBP15.64■□□□□ 0.09
PVT1-210ENST00000521122 LRRC7Q96NW7 1537 aa15.63■□□□□ 0.09
PVT1-210ENST00000521122 IFFO2Q5TF58 517 aa15.63■□□□□ 0.09
PVT1-210ENST00000521122 NUP153P49790 1475 aaKnown RBP15.63■□□□□ 0.09
PVT1-210ENST00000521122 ABCA6Q8N139 1617 aa15.62■□□□□ 0.09
PVT1-210ENST00000521122 TRIM52Q96A61 297 aa15.62■□□□□ 0.09
PVT1-210ENST00000521122 P3H3Q8IVL6 736 aa15.6■□□□□ 0.09
PVT1-210ENST00000521122 AFAP1Q8N556 730 aa15.6■□□□□ 0.09
PVT1-210ENST00000521122 MYT1LQ9UL68 1186 aa15.6■□□□□ 0.09
PVT1-210ENST00000521122 DNMT1P26358 1616 aaKnown RBP15.59■□□□□ 0.09
PVT1-210ENST00000521122 A2ML1A8K2U0 1454 aa15.58■□□□□ 0.08
PVT1-210ENST00000521122 SYNMO15061 1565 aa15.58■□□□□ 0.08
PVT1-210ENST00000521122 FAM135BQ49AJ0 1406 aa15.57■□□□□ 0.08
PVT1-210ENST00000521122 MLH3Q9UHC1 1453 aa15.57■□□□□ 0.08
PVT1-210ENST00000521122 EFCAB2Q5VUJ9 269 aa15.56■□□□□ 0.08
PVT1-210ENST00000521122 STRCP1A6NGW2 1772 aa15.54■□□□□ 0.08
PVT1-210ENST00000521122 ZRANB1Q9UGI0 708 aa15.54■□□□□ 0.08
PVT1-210ENST00000521122 SETBP1Q9Y6X0 1596 aa15.53■□□□□ 0.08
PVT1-210ENST00000521122 FOXD1Q16676 465 aa15.53■□□□□ 0.08
PVT1-210ENST00000521122 ZNF772Q68DY9 489 aaPredicted RBP15.53■□□□□ 0.08
PVT1-210ENST00000521122 CDK12Q9NYV4 1490 aaPredicted RBP15.52■□□□□ 0.08
PVT1-210ENST00000521122 RBM33Q96EV2 1170 aaKnown RBP15.51■□□□□ 0.07
PVT1-210ENST00000521122 MED14O60244 1454 aa15.51■□□□□ 0.07
PVT1-210ENST00000521122 ANKLE2Q86XL3 938 aa15.5■□□□□ 0.07
PVT1-210ENST00000521122 NPHP4O75161 1426 aaPredicted RBP15.5■□□□□ 0.07
PVT1-210ENST00000521122 CLTCQ00610 1675 aaKnown RBP15.49■□□□□ 0.07
PVT1-210ENST00000521122 RXRBP28702 533 aa15.49■□□□□ 0.07
PVT1-210ENST00000521122 CDK13Q14004 1512 aaKnown RBP15.48■□□□□ 0.07
PVT1-210ENST00000521122 MYO5CQ9NQX4 1742 aa15.47■□□□□ 0.07
PVT1-210ENST00000521122 SAMD9Q5K651 1589 aa15.46■□□□□ 0.07
PVT1-210ENST00000521122 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.46■□□□□ 0.07
PVT1-210ENST00000521122 DEPDC5O75140 1603 aa15.46■□□□□ 0.06
PVT1-210ENST00000521122 JCADQ9P266 1359 aa15.44■□□□□ 0.06
PVT1-210ENST00000521122 IQGAP1P46940 1657 aa15.44■□□□□ 0.06
PVT1-210ENST00000521122 ROBO1Q9Y6N7 1651 aa15.42■□□□□ 0.06
PVT1-210ENST00000521122 KIDINS220Q9ULH0 1771 aa15.41■□□□□ 0.06
PVT1-210ENST00000521122 ABCC1P33527 1531 aa15.41■□□□□ 0.06
PVT1-210ENST00000521122 XIRP1Q702N8 1843 aaKnown RBP15.4■□□□□ 0.06
PVT1-210ENST00000521122 LRP6O75581 1613 aa15.4■□□□□ 0.06
PVT1-210ENST00000521122 ARHGAP5Q13017 1502 aa15.39■□□□□ 0.05
PVT1-210ENST00000521122 SUPT5HO00267 1087 aaKnown RBP15.38■□□□□ 0.05
PVT1-210ENST00000521122 MEX3CQ5U5Q3 659 aaKnown RBP15.38■□□□□ 0.05
PVT1-210ENST00000521122 THEMISQ8N1K5 641 aaPredicted RBP15.38■□□□□ 0.05
PVT1-210ENST00000521122 ITSN2Q9NZM3 1697 aa15.38■□□□□ 0.05
PVT1-210ENST00000521122 SPATA31A6Q5VVP1 1343 aa15.35■□□□□ 0.05
PVT1-210ENST00000521122 LRP5O75197 1615 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms