RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, human

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMCH1-222	ENST00000515847	ABCA9	Q8IUA7	1624 aa		12.25	□□□□□ -0.45
LIMCH1-222	ENST00000515847	TTC37	Q6PGP7	1564 aa		12.22	□□□□□ -0.45
LIMCH1-222	ENST00000515847	CD109	Q6YHK3	1445 aa		12.22	□□□□□ -0.45
LIMCH1-222	ENST00000515847	KIF14	Q15058	1648 aa		12.22	□□□□□ -0.45
LIMCH1-222	ENST00000515847	MAGI3	Q5TCQ9	1506 aa		12.21	□□□□□ -0.45
LIMCH1-222	ENST00000515847	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	12.21	□□□□□ -0.45
LIMCH1-222	ENST00000515847	TRO	Q12816	1431 aa	Predicted RBP	12.21	□□□□□ -0.45
LIMCH1-222	ENST00000515847	TEX14	Q8IWB6	1497 aa		12.21	□□□□□ -0.46
LIMCH1-222	ENST00000515847	APLP2	Q06481	763 aa		12.19	□□□□□ -0.46
LIMCH1-222	ENST00000515847	KDM6B	O15054	1643 aa		12.19	□□□□□ -0.46
LIMCH1-222	ENST00000515847	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.18	□□□□□ -0.46
LIMCH1-222	ENST00000515847	TIAM1	Q13009	1591 aa		12.16	□□□□□ -0.46
LIMCH1-222	ENST00000515847	MYO5C	Q9NQX4	1742 aa		12.15	□□□□□ -0.46
LIMCH1-222	ENST00000515847	CAPN15	O75808	1086 aa		12.15	□□□□□ -0.46
LIMCH1-222	ENST00000515847	EHBP1L1	Q8N3D4	1523 aa		12.15	□□□□□ -0.46
LIMCH1-222	ENST00000515847	MAP3K1	Q13233	1512 aa		12.14	□□□□□ -0.47
LIMCH1-222	ENST00000515847	MTUS2	Q5JR59	1369 aa		12.14	□□□□□ -0.47
LIMCH1-222	ENST00000515847	COL17A1	Q9UMD9	1497 aa	Predicted RBP	12.14	□□□□□ -0.47
LIMCH1-222	ENST00000515847	NEO1	Q92859	1461 aa		12.13	□□□□□ -0.47
LIMCH1-222	ENST00000515847	CFAP74	Q9C0B2	1584 aa		12.13	□□□□□ -0.47
LIMCH1-222	ENST00000515847	FANCA	O15360	1455 aa		12.12	□□□□□ -0.47
LIMCH1-222	ENST00000515847	PLCH2	O75038	1416 aa		12.11	□□□□□ -0.47
LIMCH1-222	ENST00000515847	ARAP3	Q8WWN8	1544 aa		12.11	□□□□□ -0.47
LIMCH1-222	ENST00000515847	PREX2	Q70Z35	1606 aa		12.11	□□□□□ -0.47
LIMCH1-222	ENST00000515847	CDC42BPA	Q5VT25	1732 aa		12.1	□□□□□ -0.47
LIMCH1-222	ENST00000515847	CDC42BPB	Q9Y5S2	1711 aa		12.1	□□□□□ -0.47
LIMCH1-222	ENST00000515847	ARHGAP5	Q13017	1502 aa		12.1	□□□□□ -0.47
LIMCH1-222	ENST00000515847	PHLDB1	Q86UU1	1377 aa		12.09	□□□□□ -0.47
LIMCH1-222	ENST00000515847	LRRC9	Q6ZRR7	1453 aa		12.08	□□□□□ -0.47
LIMCH1-222	ENST00000515847	DSG3	P32926	999 aa		12.08	□□□□□ -0.48
LIMCH1-222	ENST00000515847	AKNA	Q7Z591	1439 aa		12.08	□□□□□ -0.48
LIMCH1-222	ENST00000515847	SUPT6H	Q7KZ85	1726 aa	Known RBP	12.08	□□□□□ -0.48
LIMCH1-222	ENST00000515847	FRMPD1	Q5SYB0	1578 aa		12.07	□□□□□ -0.48
LIMCH1-222	ENST00000515847	GPATCH8	Q9UKJ3	1502 aa	Known RBP	12.06	□□□□□ -0.48
LIMCH1-222	ENST00000515847	ADGRL1	O94910	1474 aa		12.06	□□□□□ -0.48
LIMCH1-222	ENST00000515847	NCOA2	Q15596	1464 aa		12.06	□□□□□ -0.48
LIMCH1-222	ENST00000515847	CCNB3	Q8WWL7	1395 aa		12.05	□□□□□ -0.48
LIMCH1-222	ENST00000515847	KANK4	Q5T7N3	995 aa	Predicted RBP	12.05	□□□□□ -0.48
LIMCH1-222	ENST00000515847	EFCAB2	Q5VUJ9	269 aa		12.05	□□□□□ -0.48
LIMCH1-222	ENST00000515847	RICTOR	Q6R327	1708 aa		12.05	□□□□□ -0.48
LIMCH1-222	ENST00000515847	ITSN2	Q9NZM3	1697 aa		12.04	□□□□□ -0.48
LIMCH1-222	ENST00000515847	DENND4B	O75064	1496 aa	Predicted RBP	12.04	□□□□□ -0.48
LIMCH1-222	ENST00000515847	ABCC1	P33527	1531 aa		12.03	□□□□□ -0.48
LIMCH1-222	ENST00000515847	RAPGEF3	O95398	923 aa		12.03	□□□□□ -0.48
LIMCH1-222	ENST00000515847	SAMD9L	Q8IVG5	1584 aa		12.03	□□□□□ -0.48
LIMCH1-222	ENST00000515847	POGZ	Q7Z3K3	1410 aa		12.03	□□□□□ -0.48
LIMCH1-222	ENST00000515847	SCAPER	Q9BY12	1400 aa		12.03	□□□□□ -0.48
LIMCH1-222	ENST00000515847	CFDP1	Q9UEE9	299 aa	Predicted RBP	12	□□□□□ -0.49
LIMCH1-222	ENST00000515847	PLEKHH2	Q8IVE3	1493 aa		12	□□□□□ -0.49
LIMCH1-222	ENST00000515847	ZMYM4	Q5VZL5	1548 aa		12	□□□□□ -0.49
LIMCH1-222	ENST00000515847	SYCP2	Q9BX26	1530 aa		12	□□□□□ -0.49
LIMCH1-222	ENST00000515847	ARHGEF12	Q9NZN5	1544 aa		12	□□□□□ -0.49
LIMCH1-222	ENST00000515847	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.99	□□□□□ -0.49
LIMCH1-222	ENST00000515847	KDM5C	P41229	1560 aa		11.98	□□□□□ -0.49
LIMCH1-222	ENST00000515847	ARHGEF40	Q8TER5	1519 aa		11.98	□□□□□ -0.49
LIMCH1-222	ENST00000515847	ZNF518A	Q6AHZ1	1483 aa		11.98	□□□□□ -0.49
LIMCH1-222	ENST00000515847	TRAPPC8	Q9Y2L5	1435 aa		11.97	□□□□□ -0.49
LIMCH1-222	ENST00000515847	CAMSAP2	Q08AD1	1489 aa		11.96	□□□□□ -0.49
LIMCH1-222	ENST00000515847	MYOM3	Q5VTT5	1437 aa		11.96	□□□□□ -0.49
LIMCH1-222	ENST00000515847	ZNF644	Q9H582	1327 aa	Predicted RBP	11.96	□□□□□ -0.49
LIMCH1-222	ENST00000515847	HECW2	Q9P2P5	1572 aa		11.96	□□□□□ -0.5
LIMCH1-222	ENST00000515847	ZFYVE16	Q7Z3T8	1539 aa		11.96	□□□□□ -0.5
LIMCH1-222	ENST00000515847	MIA2	Q96PC5	1412 aa		11.95	□□□□□ -0.5
LIMCH1-222	ENST00000515847	YEATS2	Q9ULM3	1422 aa		11.94	□□□□□ -0.5
LIMCH1-222	ENST00000515847	KIAA1107	Q9UPP5	1409 aa		11.94	□□□□□ -0.5
LIMCH1-222	ENST00000515847	SAMD1	Q6SPF0	538 aa	Predicted RBP	11.94	□□□□□ -0.5
LIMCH1-222	ENST00000515847	AFAP1	Q8N556	730 aa		11.94	□□□□□ -0.5
LIMCH1-222	ENST00000515847	MAGI2	Q86UL8	1455 aa		11.94	□□□□□ -0.5
LIMCH1-222	ENST00000515847	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
LIMCH1-222	ENST00000515847	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.93	□□□□□ -0.5
LIMCH1-222	ENST00000515847	MBD5	Q9P267	1494 aa		11.92	□□□□□ -0.5
LIMCH1-222	ENST00000515847	ABCA6	Q8N139	1617 aa		11.92	□□□□□ -0.5
LIMCH1-222	ENST00000515847	MLH3	Q9UHC1	1453 aa		11.91	□□□□□ -0.5
LIMCH1-222	ENST00000515847	KIDINS220	Q9ULH0	1771 aa		11.91	□□□□□ -0.5
LIMCH1-222	ENST00000515847	INO80	Q9ULG1	1556 aa	Predicted RBP	11.91	□□□□□ -0.5
LIMCH1-222	ENST00000515847	DIP2C	Q9Y2E4	1556 aa		11.91	□□□□□ -0.5
LIMCH1-222	ENST00000515847	SIGLEC1	Q9BZZ2	1709 aa		11.91	□□□□□ -0.5
LIMCH1-222	ENST00000515847	PTPN23	Q9H3S7	1636 aa		11.9	□□□□□ -0.5
LIMCH1-222	ENST00000515847	ARHGEF5	Q12774	1597 aa		11.9	□□□□□ -0.5
LIMCH1-222	ENST00000515847	RSPH4A	Q5TD94	716 aa		11.9	□□□□□ -0.5
LIMCH1-222	ENST00000515847	FGD6	Q6ZV73	1430 aa		11.9	□□□□□ -0.5
LIMCH1-222	ENST00000515847	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.9	□□□□□ -0.5
LIMCH1-222	ENST00000515847	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.9	□□□□□ -0.5
LIMCH1-222	ENST00000515847	ATP7A	Q04656	1500 aa		11.9	□□□□□ -0.5
LIMCH1-222	ENST00000515847	CCDC141	Q6ZP82	1450 aa		11.89	□□□□□ -0.51
LIMCH1-222	ENST00000515847	MYT1L	Q9UL68	1186 aa		11.89	□□□□□ -0.51
LIMCH1-222	ENST00000515847	C9orf84	Q5VXU9	1444 aa		11.88	□□□□□ -0.51
LIMCH1-222	ENST00000515847	ABCB7	O75027	752 aa		11.88	□□□□□ -0.51
LIMCH1-222	ENST00000515847	ATP10A	O60312	1499 aa		11.88	□□□□□ -0.51
LIMCH1-222	ENST00000515847	SPAG9	O60271	1321 aa	Known RBP	11.87	□□□□□ -0.51
LIMCH1-222	ENST00000515847	MYCN	P04198	464 aa	Predicted RBP	11.87	□□□□□ -0.51
LIMCH1-222	ENST00000515847	TCOF1	Q13428	1488 aa	Known RBP	11.87	□□□□□ -0.51
LIMCH1-222	ENST00000515847	KDM4F	A0A1W2PPD8	638 aa		11.86	□□□□□ -0.51
LIMCH1-222	ENST00000515847	RERE	Q9P2R6	1566 aa		11.86	□□□□□ -0.51
LIMCH1-222	ENST00000515847	BCORL1	Q5H9F3	1711 aa		11.86	□□□□□ -0.51
LIMCH1-222	ENST00000515847	CROCC2	H7BZ55	1655 aa		11.85	□□□□□ -0.51
LIMCH1-222	ENST00000515847	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.85	□□□□□ -0.51
LIMCH1-222	ENST00000515847	DNMT1	P26358	1616 aa	Known RBP	11.84	□□□□□ -0.51
LIMCH1-222	ENST00000515847	ADGB	Q8N7X0	1667 aa		11.84	□□□□□ -0.51
LIMCH1-222	ENST00000515847	MAST1	Q9Y2H9	1570 aa		11.84	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms