RNA–Protein interactions for RNA: ENST00000515527.1

SMAD1-216, Transcript of SMAD family member 1, humanhuman

TSL 2

Gene SMAD1, Length 632 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD1-216ENST00000515527 ZNF335Q9H4Z2 1342 aaPredicted RBP23.71■■□□□ 1.39
SMAD1-216ENST00000515527 PIP4K2BP78356 416 aa23.7■■□□□ 1.38
SMAD1-216ENST00000515527 MAGI2Q86UL8 1455 aa23.68■■□□□ 1.38
SMAD1-216ENST00000515527 RAPGEF2Q9Y4G8 1499 aa23.68■■□□□ 1.38
SMAD1-216ENST00000515527 NCOA1Q15788 1441 aa23.68■■□□□ 1.38
SMAD1-216ENST00000515527 FAM9AQ8IZU1 332 aaPredicted RBP23.67■■□□□ 1.38
SMAD1-216ENST00000515527 CFAP74Q9C0B2 1584 aa23.65■■□□□ 1.38
SMAD1-216ENST00000515527 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.64■■□□□ 1.37
SMAD1-216ENST00000515527 SUPT5HO00267 1087 aaKnown RBP23.64■■□□□ 1.37
SMAD1-216ENST00000515527 HNRNPUL2Q1KMD3 747 aaKnown RBP23.64■■□□□ 1.37
SMAD1-216ENST00000515527 HECW1Q76N89 1606 aa23.63■■□□□ 1.37
SMAD1-216ENST00000515527 CTTNBP2Q8WZ74 1663 aa23.61■■□□□ 1.37
SMAD1-216ENST00000515527 ATP10AO60312 1499 aa23.59■■□□□ 1.37
SMAD1-216ENST00000515527 C9orf84Q5VXU9 1444 aa23.59■■□□□ 1.37
SMAD1-216ENST00000515527 C3P01024 1663 aa23.56■■□□□ 1.36
SMAD1-216ENST00000515527 CAMSAP1Q5T5Y3 1602 aa23.55■■□□□ 1.36
SMAD1-216ENST00000515527 TOM1O60784 492 aa23.55■■□□□ 1.36
SMAD1-216ENST00000515527 NCKAP5LQ9HCH0 1330 aa23.54■■□□□ 1.36
SMAD1-216ENST00000515527 TRAPPC8Q9Y2L5 1435 aa23.52■■□□□ 1.36
SMAD1-216ENST00000515527 P3H3Q8IVL6 736 aa23.48■■□□□ 1.35
SMAD1-216ENST00000515527 ESF1Q9H501 851 aaKnown RBP23.48■■□□□ 1.35
SMAD1-216ENST00000515527 SCAPERQ9BY12 1400 aa23.45■■□□□ 1.34
SMAD1-216ENST00000515527 SENP3Q9H4L4 574 aaPredicted RBP23.44■■□□□ 1.34
SMAD1-216ENST00000515527 RGS17Q9UGC6 210 aaPredicted RBP23.44■■□□□ 1.34
SMAD1-216ENST00000515527 RAPGEF6Q8TEU7 1601 aa23.42■■□□□ 1.34
SMAD1-216ENST00000515527 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP23.39■■□□□ 1.34
SMAD1-216ENST00000515527 PLEKHD1A6NEE1 506 aa23.39■■□□□ 1.33
SMAD1-216ENST00000515527 PKD2Q13563 968 aa23.39■■□□□ 1.33
SMAD1-216ENST00000515527 PPP6R1Q9UPN7 881 aa23.37■■□□□ 1.33
SMAD1-216ENST00000515527 MYT1LQ9UL68 1186 aa23.35■■□□□ 1.33
SMAD1-216ENST00000515527 SUPT6HQ7KZ85 1726 aaKnown RBP23.33■■□□□ 1.33
SMAD1-216ENST00000515527 PTPRKQ15262 1439 aa23.3■■□□□ 1.32
SMAD1-216ENST00000515527 PLA2R1Q13018 1463 aa23.3■■□□□ 1.32
SMAD1-216ENST00000515527 CPS1P31327 1500 aa23.29■■□□□ 1.32
SMAD1-216ENST00000515527 NUP153P49790 1475 aaKnown RBP23.29■■□□□ 1.32
SMAD1-216ENST00000515527 POTEAQ6S8J7 498 aa23.28■■□□□ 1.32
SMAD1-216ENST00000515527 TCOF1Q13428 1488 aaKnown RBP23.27■■□□□ 1.32
SMAD1-216ENST00000515527 NPATQ14207 1427 aa23.26■■□□□ 1.31
SMAD1-216ENST00000515527 CNTLNQ9NXG0 1405 aa23.25■■□□□ 1.31
SMAD1-216ENST00000515527 SETD1AO15047 1707 aaKnown RBP23.25■■□□□ 1.31
SMAD1-216ENST00000515527 AGLP35573 1532 aa23.23■■□□□ 1.31
SMAD1-216ENST00000515527 DIP2CQ9Y2E4 1556 aa23.23■■□□□ 1.31
SMAD1-216ENST00000515527 PLCH2O75038 1416 aa23.22■■□□□ 1.31
SMAD1-216ENST00000515527 ZNF518AQ6AHZ1 1483 aa23.22■■□□□ 1.31
SMAD1-216ENST00000515527 REREQ9P2R6 1566 aa23.22■■□□□ 1.31
SMAD1-216ENST00000515527 ALKQ9UM73 1620 aa23.21■■□□□ 1.31
SMAD1-216ENST00000515527 ZNF142P52746 1687 aaPredicted RBP23.21■■□□□ 1.31
SMAD1-216ENST00000515527 SHANK2Q9UPX8 1470 aa23.2■■□□□ 1.3
SMAD1-216ENST00000515527 AFAP1Q8N556 730 aa23.19■■□□□ 1.3
SMAD1-216ENST00000515527 EFCAB2Q5VUJ9 269 aa23.18■■□□□ 1.3
SMAD1-216ENST00000515527 MYO3AQ8NEV4 1616 aa23.18■■□□□ 1.3
SMAD1-216ENST00000515527 CEP170BQ9Y4F5 1589 aaPredicted RBP23.17■■□□□ 1.3
SMAD1-216ENST00000515527 MROH2AA6NES4 1674 aa23.16■■□□□ 1.3
SMAD1-216ENST00000515527 ABCA6Q8N139 1617 aa23.15■■□□□ 1.3
SMAD1-216ENST00000515527 KDM5CP41229 1560 aa23.15■■□□□ 1.3
SMAD1-216ENST00000515527 ZMYM3Q14202 1370 aa23.14■■□□□ 1.29
SMAD1-216ENST00000515527 SRCAPQ6ZRS2 3230 aa23.13■■□□□ 1.29
SMAD1-216ENST00000515527 SAMD9Q5K651 1589 aa23.12■■□□□ 1.29
SMAD1-216ENST00000515527 MYO5CQ9NQX4 1742 aa23.1■■□□□ 1.29
SMAD1-216ENST00000515527 UPF1Q92900 1129 aaKnown RBP eCLIP23.08■■□□□ 1.29
SMAD1-216ENST00000515527 POLR1AO95602 1720 aaPredicted RBP23.06■■□□□ 1.28
SMAD1-216ENST00000515527 MLH3Q9UHC1 1453 aa23.03■■□□□ 1.28
SMAD1-216ENST00000515527 VWDEQ8N2E2 1590 aa23.01■■□□□ 1.27
SMAD1-216ENST00000515527 NEURL4Q96JN8 1562 aa23■■□□□ 1.27
SMAD1-216ENST00000515527 CLTCQ00610 1675 aaKnown RBP23■■□□□ 1.27
SMAD1-216ENST00000515527 PRXQ9BXM0 1461 aa22.99■■□□□ 1.27
SMAD1-216ENST00000515527 RNF17Q9BXT8 1623 aaKnown RBP22.99■■□□□ 1.27
SMAD1-216ENST00000515527 ARHGAP5Q13017 1502 aa22.98■■□□□ 1.27
SMAD1-216ENST00000515527 DNMT1P26358 1616 aaKnown RBP22.98■■□□□ 1.27
SMAD1-216ENST00000515527 RANGAP1P46060 587 aaPredicted RBP22.96■■□□□ 1.27
SMAD1-216ENST00000515527 A2ML1A8K2U0 1454 aa22.96■■□□□ 1.27
SMAD1-216ENST00000515527 CDK13Q14004 1512 aaKnown RBP22.96■■□□□ 1.27
SMAD1-216ENST00000515527 LRRC7Q96NW7 1537 aa22.92■■□□□ 1.26
SMAD1-216ENST00000515527 KIDINS220Q9ULH0 1771 aa22.9■■□□□ 1.26
SMAD1-216ENST00000515527 ANKLE2Q86XL3 938 aa22.89■■□□□ 1.25
SMAD1-216ENST00000515527 STRCP1A6NGW2 1772 aa22.86■■□□□ 1.25
SMAD1-216ENST00000515527 TRIM52Q96A61 297 aa22.86■■□□□ 1.25
SMAD1-216ENST00000515527 SYNMO15061 1565 aa22.85■■□□□ 1.25
SMAD1-216ENST00000515527 NPHP4O75161 1426 aaPredicted RBP22.84■■□□□ 1.25
SMAD1-216ENST00000515527 KIF14Q15058 1648 aa22.84■■□□□ 1.25
SMAD1-216ENST00000515527 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.81■■□□□ 1.24
SMAD1-216ENST00000515527 GGT6Q6P531 493 aa22.8■■□□□ 1.24
SMAD1-216ENST00000515527 ITSN2Q9NZM3 1697 aa22.8■■□□□ 1.24
SMAD1-216ENST00000515527 ABCC1P33527 1531 aa22.78■■□□□ 1.24
SMAD1-216ENST00000515527 CDC42BPBQ9Y5S2 1711 aa22.77■■□□□ 1.24
SMAD1-216ENST00000515527 IQGAP1P46940 1657 aa22.77■■□□□ 1.24
SMAD1-216ENST00000515527 ATP1B4Q9UN42 357 aaPredicted RBP22.76■■□□□ 1.23
SMAD1-216ENST00000515527 CDK11AQ9UQ88 783 aaPredicted RBP22.76■■□□□ 1.23
SMAD1-216ENST00000515527 MED14O60244 1454 aa22.76■■□□□ 1.23
SMAD1-216ENST00000515527 FAM135BQ49AJ0 1406 aa22.75■■□□□ 1.23
SMAD1-216ENST00000515527 DEPDC5O75140 1603 aa22.75■■□□□ 1.23
SMAD1-216ENST00000515527 THEMISQ8N1K5 641 aaPredicted RBP22.73■■□□□ 1.23
SMAD1-216ENST00000515527 TNRQ92752 1358 aa22.73■■□□□ 1.23
SMAD1-216ENST00000515527 ZNF772Q68DY9 489 aaPredicted RBP22.68■■□□□ 1.22
SMAD1-216ENST00000515527 SAMD9LQ8IVG5 1584 aa22.67■■□□□ 1.22
SMAD1-216ENST00000515527 CLIP1P30622 1438 aa22.67■■□□□ 1.22
SMAD1-216ENST00000515527 TROQ12816 1431 aaPredicted RBP22.66■■□□□ 1.22
SMAD1-216ENST00000515527 SPAG9O60271 1321 aaKnown RBP22.66■■□□□ 1.22
SMAD1-216ENST00000515527 ROBO1Q9Y6N7 1651 aa22.66■■□□□ 1.22
SMAD1-216ENST00000515527 FBXO31Q5XUX0 539 aaPredicted RBP22.66■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms