RNA–Protein interactions for RNA: ENST00000515261.1

PDLIM3-211, Transcript of PDZ and LIM domain 3, humanhuman

TSL 2

Gene PDLIM3, Length 622 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-211ENST00000515261 FER1L4A9Z1Z3 1794 aa26.04■■□□□ 1.76
PDLIM3-211ENST00000515261 SCAPERQ9BY12 1400 aa26.04■■□□□ 1.76
PDLIM3-211ENST00000515261 HSPA2P54652 639 aa26.03■■□□□ 1.76
PDLIM3-211ENST00000515261 MYO5CQ9NQX4 1742 aa26.01■■□□□ 1.75
PDLIM3-211ENST00000515261 UBTFP17480 764 aaKnown RBP26■■□□□ 1.75
PDLIM3-211ENST00000515261 FMN1Q68DA7 1419 aa25.99■■□□□ 1.75
PDLIM3-211ENST00000515261 EHMT2Q96KQ7 1210 aa25.99■■□□□ 1.75
PDLIM3-211ENST00000515261 EFCAB2Q5VUJ9 269 aa25.97■■□□□ 1.75
PDLIM3-211ENST00000515261 CDK11AQ9UQ88 783 aaPredicted RBP25.97■■□□□ 1.75
PDLIM3-211ENST00000515261 ATP10AO60312 1499 aa25.95■■□□□ 1.74
PDLIM3-211ENST00000515261 C9orf84Q5VXU9 1444 aa25.92■■□□□ 1.74
PDLIM3-211ENST00000515261 KIF14Q15058 1648 aa25.92■■□□□ 1.74
PDLIM3-211ENST00000515261 ARHGAP35Q9NRY4 1499 aa25.91■■□□□ 1.74
PDLIM3-211ENST00000515261 ARHGEF12Q9NZN5 1544 aa25.9■■□□□ 1.74
PDLIM3-211ENST00000515261 ARHGAP5Q13017 1502 aa25.88■■□□□ 1.73
PDLIM3-211ENST00000515261 ZNF518AQ6AHZ1 1483 aa25.87■■□□□ 1.73
PDLIM3-211ENST00000515261 PREX1Q8TCU6 1659 aa25.87■■□□□ 1.73
PDLIM3-211ENST00000515261 CLIP1P30622 1438 aa25.86■■□□□ 1.73
PDLIM3-211ENST00000515261 TROQ12816 1431 aaPredicted RBP25.86■■□□□ 1.73
PDLIM3-211ENST00000515261 MYT1LQ9UL68 1186 aa25.84■■□□□ 1.73
PDLIM3-211ENST00000515261 CERKQ8TCT0 537 aa25.83■■□□□ 1.73
PDLIM3-211ENST00000515261 LRRIQ1Q96JM4 1722 aa25.83■■□□□ 1.72
PDLIM3-211ENST00000515261 AFAP1Q8N556 730 aa25.82■■□□□ 1.72
PDLIM3-211ENST00000515261 KDM5CP41229 1560 aa25.82■■□□□ 1.72
PDLIM3-211ENST00000515261 CEBPAP49715 358 aaPredicted RBP25.81■■□□□ 1.72
PDLIM3-211ENST00000515261 CDC42BPBQ9Y5S2 1711 aa25.79■■□□□ 1.72
PDLIM3-211ENST00000515261 DIP2CQ9Y2E4 1556 aa25.76■■□□□ 1.71
PDLIM3-211ENST00000515261 SETD1BQ9UPS6 1966 aaKnown RBP25.76■■□□□ 1.71
PDLIM3-211ENST00000515261 REREQ9P2R6 1566 aa25.73■■□□□ 1.71
PDLIM3-211ENST00000515261 UHRF1BP1Q6BDS2 1440 aa25.72■■□□□ 1.71
PDLIM3-211ENST00000515261 PREX2Q70Z35 1606 aa25.72■■□□□ 1.71
PDLIM3-211ENST00000515261 ABCA6Q8N139 1617 aa25.72■■□□□ 1.71
PDLIM3-211ENST00000515261 MLH3Q9UHC1 1453 aa25.72■■□□□ 1.71
PDLIM3-211ENST00000515261 STRCQ7RTU9 1775 aa25.72■■□□□ 1.71
PDLIM3-211ENST00000515261 DMRT2Q9Y5R5 561 aa25.71■■□□□ 1.71
PDLIM3-211ENST00000515261 CHIC1Q5VXU3 224 aa25.69■■□□□ 1.7
PDLIM3-211ENST00000515261 ABCC1P33527 1531 aa25.68■■□□□ 1.7
PDLIM3-211ENST00000515261 C3P01024 1663 aa25.68■■□□□ 1.7
PDLIM3-211ENST00000515261 CCDC18Q5T9S5 1454 aa25.68■■□□□ 1.7
PDLIM3-211ENST00000515261 ESF1Q9H501 851 aaKnown RBP25.68■■□□□ 1.7
PDLIM3-211ENST00000515261 ITSN2Q9NZM3 1697 aa25.68■■□□□ 1.7
PDLIM3-211ENST00000515261 TRAPPC8Q9Y2L5 1435 aa25.66■■□□□ 1.7
PDLIM3-211ENST00000515261 CASKIN1Q8WXD9 1431 aa25.65■■□□□ 1.7
PDLIM3-211ENST00000515261 AGLP35573 1532 aa25.64■■□□□ 1.7
PDLIM3-211ENST00000515261 CDC42BPAQ5VT25 1732 aa25.64■■□□□ 1.7
PDLIM3-211ENST00000515261 KIDINS220Q9ULH0 1771 aa25.62■■□□□ 1.69
PDLIM3-211ENST00000515261 PTPRTO14522 1441 aa25.55■■□□□ 1.68
PDLIM3-211ENST00000515261 CNTLNQ9NXG0 1405 aa25.55■■□□□ 1.68
PDLIM3-211ENST00000515261 ZNF777Q9ULD5 760 aaPredicted RBP25.55■■□□□ 1.68
PDLIM3-211ENST00000515261 FYCO1Q9BQS8 1478 aa25.54■■□□□ 1.68
PDLIM3-211ENST00000515261 SAMD9LQ8IVG5 1584 aa25.52■■□□□ 1.68
PDLIM3-211ENST00000515261 MROH2AA6NES4 1674 aa25.49■■□□□ 1.67
PDLIM3-211ENST00000515261 SYCP2Q9BX26 1530 aa25.49■■□□□ 1.67
PDLIM3-211ENST00000515261 SUPT6HQ7KZ85 1726 aaKnown RBP25.49■■□□□ 1.67
PDLIM3-211ENST00000515261 SPAG9O60271 1321 aaKnown RBP25.48■■□□□ 1.67
PDLIM3-211ENST00000515261 GPATCH8Q9UKJ3 1502 aaKnown RBP25.47■■□□□ 1.67
PDLIM3-211ENST00000515261 HNRNPMP52272 730 aaKnown RBP eCLIP25.46■■□□□ 1.67
PDLIM3-211ENST00000515261 NCOA1Q15788 1441 aa25.46■■□□□ 1.67
PDLIM3-211ENST00000515261 DISP3Q9P2K9 1392 aa25.45■■□□□ 1.67
PDLIM3-211ENST00000515261 NPATQ14207 1427 aa25.45■■□□□ 1.66
PDLIM3-211ENST00000515261 ZMYM3Q14202 1370 aa25.44■■□□□ 1.66
PDLIM3-211ENST00000515261 LTBP4Q8N2S1 1624 aa25.43■■□□□ 1.66
PDLIM3-211ENST00000515261 ATP7AQ04656 1500 aa25.42■■□□□ 1.66
PDLIM3-211ENST00000515261 CAMSAP1Q5T5Y3 1602 aa25.42■■□□□ 1.66
PDLIM3-211ENST00000515261 CFDP1Q9UEE9 299 aaPredicted RBP25.41■■□□□ 1.66
PDLIM3-211ENST00000515261 CLTCQ00610 1675 aaKnown RBP25.41■■□□□ 1.66
PDLIM3-211ENST00000515261 PLEKHH2Q8IVE3 1493 aa25.4■■□□□ 1.66
PDLIM3-211ENST00000515261 KIAA1107Q9UPP5 1409 aa25.39■■□□□ 1.66
PDLIM3-211ENST00000515261 INO80Q9ULG1 1556 aaPredicted RBP25.39■■□□□ 1.65
PDLIM3-211ENST00000515261 CCNB3Q8WWL7 1395 aa25.38■■□□□ 1.65
PDLIM3-211ENST00000515261 IQSEC2Q5JU85 1478 aa25.38■■□□□ 1.65
PDLIM3-211ENST00000515261 PLXNC1O60486 1568 aa25.37■■□□□ 1.65
PDLIM3-211ENST00000515261 A2MP01023 1474 aa25.37■■□□□ 1.65
PDLIM3-211ENST00000515261 MTUS2Q5JR59 1369 aa25.34■■□□□ 1.65
PDLIM3-211ENST00000515261 GGT6Q6P531 493 aa25.34■■□□□ 1.65
PDLIM3-211ENST00000515261 ILDR2Q71H61 639 aa25.34■■□□□ 1.65
PDLIM3-211ENST00000515261 MYO3AQ8NEV4 1616 aa25.34■■□□□ 1.65
PDLIM3-211ENST00000515261 NCKAP5LQ9HCH0 1330 aa25.33■■□□□ 1.64
PDLIM3-211ENST00000515261 ZNF142P52746 1687 aaPredicted RBP25.32■■□□□ 1.64
PDLIM3-211ENST00000515261 ADGBQ8N7X0 1667 aa25.32■■□□□ 1.64
PDLIM3-211ENST00000515261 SPATA31D1Q6ZQQ2 1576 aa25.31■■□□□ 1.64
PDLIM3-211ENST00000515261 CEP170BQ9Y4F5 1589 aaPredicted RBP25.29■■□□□ 1.64
PDLIM3-211ENST00000515261 PTPRKQ15262 1439 aa25.29■■□□□ 1.64
PDLIM3-211ENST00000515261 PLA2R1Q13018 1463 aa25.28■■□□□ 1.64
PDLIM3-211ENST00000515261 PKD2Q13563 968 aa25.27■■□□□ 1.64
PDLIM3-211ENST00000515261 SOCS7O14512 581 aa25.26■■□□□ 1.63
PDLIM3-211ENST00000515261 PPP6R1Q9UPN7 881 aa25.26■■□□□ 1.63
PDLIM3-211ENST00000515261 ZNF335Q9H4Z2 1342 aaPredicted RBP25.26■■□□□ 1.63
PDLIM3-211ENST00000515261 TIAM1Q13009 1591 aa25.25■■□□□ 1.63
PDLIM3-211ENST00000515261 ZNF644Q9H582 1327 aaPredicted RBP25.24■■□□□ 1.63
PDLIM3-211ENST00000515261 EHBP1L1Q8N3D4 1523 aa25.22■■□□□ 1.63
PDLIM3-211ENST00000515261 TCOF1Q13428 1488 aaKnown RBP25.22■■□□□ 1.63
PDLIM3-211ENST00000515261 UBAP1LF5GYI3 381 aa25.2■■□□□ 1.62
PDLIM3-211ENST00000515261 MBD5Q9P267 1494 aa25.2■■□□□ 1.62
PDLIM3-211ENST00000515261 RTEL1-TNFRSF6BF6WH68 1400 aa25.19■■□□□ 1.62
PDLIM3-211ENST00000515261 A2ML1A8K2U0 1454 aa25.16■■□□□ 1.62
PDLIM3-211ENST00000515261 CEP162Q5TB80 1403 aa25.16■■□□□ 1.62
PDLIM3-211ENST00000515261 DHX29Q7Z478 1369 aaKnown RBP25.16■■□□□ 1.62
PDLIM3-211ENST00000515261 DNMT1P26358 1616 aaKnown RBP25.15■■□□□ 1.62
PDLIM3-211ENST00000515261 KIF3BO15066 747 aa25.12■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms