RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 TAOK2Q9UL54 1235 aa16.94■□□□□ 0.3
TCOF1-214ENST00000515035 KCNJ4P48050 445 aa16.94■□□□□ 0.3
TCOF1-214ENST00000515035 GBP4Q96PP9 640 aa16.94■□□□□ 0.3
TCOF1-214ENST00000515035 HAP1P54257 671 aaPredicted RBP16.93■□□□□ 0.3
TCOF1-214ENST00000515035 KANK1Q14678 1352 aa16.93■□□□□ 0.3
TCOF1-214ENST00000515035 TCERG1O14776 1098 aaKnown RBP16.93■□□□□ 0.3
TCOF1-214ENST00000515035 IPO9Q96P70 1041 aaKnown RBP16.93■□□□□ 0.3
TCOF1-214ENST00000515035 TDRD9Q8NDG6 1382 aaKnown RBP16.92■□□□□ 0.3
TCOF1-214ENST00000515035 A0A0G2JS52 829 aa16.92■□□□□ 0.3
TCOF1-214ENST00000515035 GOLGA6L3A6NEY3 463 aa16.9■□□□□ 0.3
TCOF1-214ENST00000515035 PLEKHG5O94827 1062 aa16.9■□□□□ 0.3
TCOF1-214ENST00000515035 PTMSP20962 102 aa16.89■□□□□ 0.29
TCOF1-214ENST00000515035 HDGFP51858 240 aaKnown RBP16.89■□□□□ 0.29
TCOF1-214ENST00000515035 TNNT3P45378 269 aaPredicted RBP16.88■□□□□ 0.29
TCOF1-214ENST00000515035 NAP1L2Q9ULW6 460 aaPredicted RBP16.88■□□□□ 0.29
TCOF1-214ENST00000515035 TOP2AP11388 1531 aaKnown RBP16.88■□□□□ 0.29
TCOF1-214ENST00000515035 TULP1O00294 542 aaPredicted RBP16.88■□□□□ 0.29
TCOF1-214ENST00000515035 OS9Q13438 667 aaPredicted RBP16.88■□□□□ 0.29
TCOF1-214ENST00000515035 POGKQ9P215 609 aa16.88■□□□□ 0.29
TCOF1-214ENST00000515035 TIMELESSQ9UNS1 1208 aa16.88■□□□□ 0.29
TCOF1-214ENST00000515035 MCCP23508 829 aa16.87■□□□□ 0.29
TCOF1-214ENST00000515035 U2SURPO15042 1029 aaKnown RBP16.85■□□□□ 0.29
TCOF1-214ENST00000515035 HSP90AA2PQ14568 343 aaPredicted RBP16.85■□□□□ 0.29
TCOF1-214ENST00000515035 CFAP44Q96MT7 982 aa16.84■□□□□ 0.29
TCOF1-214ENST00000515035 RCAN3Q9UKA8 241 aa16.83■□□□□ 0.29
TCOF1-214ENST00000515035 ATAD2BQ9ULI0 1458 aa16.83■□□□□ 0.28
TCOF1-214ENST00000515035 MLECQ14165 292 aa16.83■□□□□ 0.28
TCOF1-214ENST00000515035 RSPH6AQ9H0K4 717 aa16.82■□□□□ 0.28
TCOF1-214ENST00000515035 EFCAB2Q5VUJ9 269 aa16.81■□□□□ 0.28
TCOF1-214ENST00000515035 FMN1Q68DA7 1419 aa16.81■□□□□ 0.28
TCOF1-214ENST00000515035 VSIG10Q8N0Z9 540 aa16.8■□□□□ 0.28
TCOF1-214ENST00000515035 ABCC8Q09428 1581 aa16.79■□□□□ 0.28
TCOF1-214ENST00000515035 TMF1P82094 1093 aa16.78■□□□□ 0.28
TCOF1-214ENST00000515035 SYAP1Q96A49 352 aaPredicted RBP16.78■□□□□ 0.28
TCOF1-214ENST00000515035 USP35Q9P2H5 1018 aa16.78■□□□□ 0.28
TCOF1-214ENST00000515035 HSPA5P11021 654 aaKnown RBP16.78■□□□□ 0.28
TCOF1-214ENST00000515035 ARHGAP35Q9NRY4 1499 aa16.77■□□□□ 0.27
TCOF1-214ENST00000515035 VPS8Q8N3P4 1428 aa16.76■□□□□ 0.27
TCOF1-214ENST00000515035 GGT6Q6P531 493 aa16.75■□□□□ 0.27
TCOF1-214ENST00000515035 LMOD2Q6P5Q4 547 aa16.75■□□□□ 0.27
TCOF1-214ENST00000515035 RWDD1Q9H446 243 aaPredicted RBP16.75■□□□□ 0.27
TCOF1-214ENST00000515035 WIZO95785 1651 aa16.74■□□□□ 0.27
TCOF1-214ENST00000515035 CALD1Q05682 793 aaKnown RBP16.74■□□□□ 0.27
TCOF1-214ENST00000515035 DCAF11Q8TEB1 546 aa16.73■□□□□ 0.27
TCOF1-214ENST00000515035 MFAP1P55081 439 aaKnown RBP16.72■□□□□ 0.27
TCOF1-214ENST00000515035 APBB1O00213 710 aa16.72■□□□□ 0.27
TCOF1-214ENST00000515035 IPO8O15397 1037 aaKnown RBP16.71■□□□□ 0.27
TCOF1-214ENST00000515035 RAPGEF2Q9Y4G8 1499 aa16.71■□□□□ 0.27
TCOF1-214ENST00000515035 SMARCA4P51532 1647 aa16.71■□□□□ 0.26
TCOF1-214ENST00000515035 GSE1Q14687 1217 aa16.7■□□□□ 0.26
TCOF1-214ENST00000515035 KTN1Q86UP2 1357 aaKnown RBP16.7■□□□□ 0.26
TCOF1-214ENST00000515035 KIAA1211Q6ZU35 1233 aa16.7■□□□□ 0.26
TCOF1-214ENST00000515035 JPH4Q96JJ6 628 aa16.69■□□□□ 0.26
TCOF1-214ENST00000515035 FANCD2Q9BXW9 1451 aa16.69■□□□□ 0.26
TCOF1-214ENST00000515035 MORC1Q86VD1 984 aa16.68■□□□□ 0.26
TCOF1-214ENST00000515035 HTATSF1O43719 755 aaKnown RBP16.67■□□□□ 0.26
TCOF1-214ENST00000515035 SETD5Q9C0A6 1442 aa16.67■□□□□ 0.26
TCOF1-214ENST00000515035 PMFBP1Q8TBY8 1022 aa16.67■□□□□ 0.26
TCOF1-214ENST00000515035 ITPRIPQ8IWB1 547 aa16.67■□□□□ 0.26
TCOF1-214ENST00000515035 GNL2Q13823 731 aaKnown RBP16.66■□□□□ 0.26
TCOF1-214ENST00000515035 ANKRD30AQ9BXX3 1397 aa16.65■□□□□ 0.26
TCOF1-214ENST00000515035 RSPH4AQ5TD94 716 aa16.65■□□□□ 0.26
TCOF1-214ENST00000515035 GOLGA6L1Q8N7Z2 621 aa16.65■□□□□ 0.26
TCOF1-214ENST00000515035 RALBP1Q15311 655 aa16.63■□□□□ 0.25
TCOF1-214ENST00000515035 FOXD4L1Q9NU39 408 aa16.63■□□□□ 0.25
TCOF1-214ENST00000515035 PKD2Q13563 968 aa16.63■□□□□ 0.25
TCOF1-214ENST00000515035 DDX11L8A8MPP1 907 aa16.63■□□□□ 0.25
TCOF1-214ENST00000515035 TPM4P67936 248 aa16.62■□□□□ 0.25
TCOF1-214ENST00000515035 SRPK2P78362 688 aaKnown RBP16.62■□□□□ 0.25
TCOF1-214ENST00000515035 GOLGA2Q08379 1002 aa16.62■□□□□ 0.25
TCOF1-214ENST00000515035 FANCIQ9NVI1 1328 aa16.61■□□□□ 0.25
TCOF1-214ENST00000515035 NOC3LQ8WTT2 800 aaKnown RBP16.61■□□□□ 0.25
TCOF1-214ENST00000515035 PDE4AP27815 886 aa16.61■□□□□ 0.25
TCOF1-214ENST00000515035 SLC4A3P48751 1232 aa16.6■□□□□ 0.25
TCOF1-214ENST00000515035 KANK4Q5T7N3 995 aaPredicted RBP16.59■□□□□ 0.25
TCOF1-214ENST00000515035 OSCARQ8IYS5 282 aa16.59■□□□□ 0.25
TCOF1-214ENST00000515035 CCDC18Q5T9S5 1454 aa16.59■□□□□ 0.25
TCOF1-214ENST00000515035 SPAG9O60271 1321 aaKnown RBP16.59■□□□□ 0.25
TCOF1-214ENST00000515035 PHF14O94880 888 aa16.59■□□□□ 0.25
TCOF1-214ENST00000515035 NUP155O75694 1391 aa16.58■□□□□ 0.24
TCOF1-214ENST00000515035 KIF3BO15066 747 aa16.58■□□□□ 0.24
TCOF1-214ENST00000515035 CSPP1Q1MSJ5 1256 aa16.58■□□□□ 0.24
TCOF1-214ENST00000515035 FHOD3Q2V2M9 1422 aa16.57■□□□□ 0.24
TCOF1-214ENST00000515035 PDE3BQ13370 1112 aa16.57■□□□□ 0.24
TCOF1-214ENST00000515035 U2AF1L5P0DN76 240 aaPredicted RBP16.57■□□□□ 0.24
TCOF1-214ENST00000515035 U2AF1Q01081 240 aaKnown RBP eCLIP16.57■□□□□ 0.24
TCOF1-214ENST00000515035 DDX49Q9Y6V7 483 aaKnown RBP16.56■□□□□ 0.24
TCOF1-214ENST00000515035 CLUAP1Q96AJ1 413 aa16.56■□□□□ 0.24
TCOF1-214ENST00000515035 RAB3GAP2Q9H2M9 1393 aa16.56■□□□□ 0.24
TCOF1-214ENST00000515035 FAM161AQ3B820 660 aa16.55■□□□□ 0.24
TCOF1-214ENST00000515035 PTPRGP23470 1445 aa16.55■□□□□ 0.24
TCOF1-214ENST00000515035 NOL8Q76FK4 1167 aaKnown RBP16.54■□□□□ 0.24
TCOF1-214ENST00000515035 SMC4Q9NTJ3 1288 aa16.54■□□□□ 0.24
TCOF1-214ENST00000515035 CLSTN1O94985 981 aa16.54■□□□□ 0.24
TCOF1-214ENST00000515035 RTF1Q92541 710 aaKnown RBP16.54■□□□□ 0.24
TCOF1-214ENST00000515035 ST18O60284 1047 aa16.53■□□□□ 0.24
TCOF1-214ENST00000515035 STK26Q9P289 416 aa16.53■□□□□ 0.24
TCOF1-214ENST00000515035 HNRNPMP52272 730 aaKnown RBP eCLIP16.53■□□□□ 0.24
TCOF1-214ENST00000515035 SAFB2Q14151 953 aaKnown RBP eCLIP16.53■□□□□ 0.24
TCOF1-214ENST00000515035 SKOR2Q2VWA4 1001 aaPredicted RBP16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms