RNA–Protein interactions for RNA: ENST00000513984.5

VCAN-211, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-211ENST00000513984 ROCK1Q13464 1354 aa21.94■■□□□ 1.1
VCAN-211ENST00000513984 CFDP1Q9UEE9 299 aaPredicted RBP21.92■■□□□ 1.1
VCAN-211ENST00000513984 ZCCHC11Q5TAX3 1644 aaKnown RBP21.91■■□□□ 1.1
VCAN-211ENST00000513984 PREX2Q70Z35 1606 aa21.91■■□□□ 1.1
VCAN-211ENST00000513984 ZNF644Q9H582 1327 aaPredicted RBP21.91■■□□□ 1.1
VCAN-211ENST00000513984 CDC42BPBQ9Y5S2 1711 aa21.89■■□□□ 1.1
VCAN-211ENST00000513984 KDM6BO15054 1643 aa21.89■■□□□ 1.1
VCAN-211ENST00000513984 CHIC2Q9UKJ5 165 aa21.88■■□□□ 1.09
VCAN-211ENST00000513984 KDM5BQ9UGL1 1544 aa21.87■■□□□ 1.09
VCAN-211ENST00000513984 RRP7BPQ9NSQ0 103 aa21.87■■□□□ 1.09
VCAN-211ENST00000513984 ADGRL2O95490 1459 aa21.84■■□□□ 1.09
VCAN-211ENST00000513984 TTC37Q6PGP7 1564 aa21.84■■□□□ 1.09
VCAN-211ENST00000513984 MYO5CQ9NQX4 1742 aa21.83■■□□□ 1.09
VCAN-211ENST00000513984 ZNF316A6NFI3 1004 aaPredicted RBP21.83■■□□□ 1.09
VCAN-211ENST00000513984 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.83■■□□□ 1.08
VCAN-211ENST00000513984 SHANK2Q9UPX8 1470 aa21.82■■□□□ 1.08
VCAN-211ENST00000513984 ARHGEF5Q12774 1597 aa21.81■■□□□ 1.08
VCAN-211ENST00000513984 SAMD9LQ8IVG5 1584 aa21.8■■□□□ 1.08
VCAN-211ENST00000513984 ACIN1Q9UKV3 1341 aaKnown RBP21.8■■□□□ 1.08
VCAN-211ENST00000513984 ZNF777Q9ULD5 760 aaPredicted RBP21.78■■□□□ 1.08
VCAN-211ENST00000513984 NCOA1Q15788 1441 aa21.77■■□□□ 1.08
VCAN-211ENST00000513984 TIMELESSQ9UNS1 1208 aa21.76■■□□□ 1.07
VCAN-211ENST00000513984 DENND4BO75064 1496 aaPredicted RBP21.75■■□□□ 1.07
VCAN-211ENST00000513984 OSCARQ8IYS5 282 aa21.74■■□□□ 1.07
VCAN-211ENST00000513984 SIN3AQ96ST3 1273 aa21.73■■□□□ 1.07
VCAN-211ENST00000513984 MBD5Q9P267 1494 aa21.73■■□□□ 1.07
VCAN-211ENST00000513984 ARHGAP5Q13017 1502 aa21.72■■□□□ 1.07
VCAN-211ENST00000513984 ANKRD30AQ9BXX3 1397 aa21.71■■□□□ 1.07
VCAN-211ENST00000513984 C9orf84Q5VXU9 1444 aa21.71■■□□□ 1.07
VCAN-211ENST00000513984 DIEXFQ68CQ4 756 aaKnown RBP21.7■■□□□ 1.06
VCAN-211ENST00000513984 CCDC141Q6ZP82 1450 aa21.69■■□□□ 1.06
VCAN-211ENST00000513984 MAST1Q9Y2H9 1570 aa21.67■■□□□ 1.06
VCAN-211ENST00000513984 NEUROD1Q13562 356 aa21.67■■□□□ 1.06
VCAN-211ENST00000513984 TRIM52Q96A61 297 aa21.67■■□□□ 1.06
VCAN-211ENST00000513984 SYCP2Q9BX26 1530 aa21.67■■□□□ 1.06
VCAN-211ENST00000513984 PLEKHH2Q8IVE3 1493 aa21.67■■□□□ 1.06
VCAN-211ENST00000513984 ARAP3Q8WWN8 1544 aa21.65■■□□□ 1.06
VCAN-211ENST00000513984 PLCH2O75038 1416 aa21.65■■□□□ 1.06
VCAN-211ENST00000513984 WDR7Q9Y4E6 1490 aa21.64■■□□□ 1.06
VCAN-211ENST00000513984 KIAA1107Q9UPP5 1409 aa21.64■■□□□ 1.05
VCAN-211ENST00000513984 RSPH4AQ5TD94 716 aa21.64■■□□□ 1.05
VCAN-211ENST00000513984 MPHOSPH9Q99550 1183 aa21.64■■□□□ 1.05
VCAN-211ENST00000513984 HNRNPMP52272 730 aaKnown RBP eCLIP21.62■■□□□ 1.05
VCAN-211ENST00000513984 ANKRD50Q9ULJ7 1429 aa21.62■■□□□ 1.05
VCAN-211ENST00000513984 TSPY4P0CV99 314 aa21.62■■□□□ 1.05
VCAN-211ENST00000513984 TSPY10P0CW01 314 aa21.62■■□□□ 1.05
VCAN-211ENST00000513984 KCNH8Q96L42 1107 aa21.61■■□□□ 1.05
VCAN-211ENST00000513984 PZPP20742 1482 aa21.61■■□□□ 1.05
VCAN-211ENST00000513984 ABCA9Q8IUA7 1624 aa21.6■■□□□ 1.05
VCAN-211ENST00000513984 TONSLQ96HA7 1378 aa21.6■■□□□ 1.05
VCAN-211ENST00000513984 ABCC1P33527 1531 aa21.59■■□□□ 1.05
VCAN-211ENST00000513984 PLXNC1O60486 1568 aa21.59■■□□□ 1.05
VCAN-211ENST00000513984 KDM5DQ9BY66 1539 aa21.58■■□□□ 1.04
VCAN-211ENST00000513984 PPP1R15AO75807 674 aaPredicted RBP21.57■■□□□ 1.04
VCAN-211ENST00000513984 KIF15Q9NS87 1388 aa21.57■■□□□ 1.04
VCAN-211ENST00000513984 ARHGEF12Q9NZN5 1544 aa21.55■■□□□ 1.04
VCAN-211ENST00000513984 ANKRD30BQ9BXX2 1392 aa21.54■■□□□ 1.04
VCAN-211ENST00000513984 ASXL2Q76L83 1435 aa21.53■■□□□ 1.04
VCAN-211ENST00000513984 EFCAB2Q5VUJ9 269 aa21.52■■□□□ 1.04
VCAN-211ENST00000513984 SLC4A1APQ9BWU0 796 aaKnown RBP21.52■■□□□ 1.04
VCAN-211ENST00000513984 RPRD2Q5VT52 1461 aaKnown RBP21.5■■□□□ 1.03
VCAN-211ENST00000513984 UNC13BO14795 1591 aa21.48■■□□□ 1.03
VCAN-211ENST00000513984 FOXD1Q16676 465 aa21.46■■□□□ 1.03
VCAN-211ENST00000513984 DUOX2Q9NRD8 1548 aa21.45■■□□□ 1.02
VCAN-211ENST00000513984 FANCAO15360 1455 aa21.44■■□□□ 1.02
VCAN-211ENST00000513984 TRAPPC8Q9Y2L5 1435 aa21.43■■□□□ 1.02
VCAN-211ENST00000513984 NUP155O75694 1391 aa21.43■■□□□ 1.02
VCAN-211ENST00000513984 TEX14Q8IWB6 1497 aa21.43■■□□□ 1.02
VCAN-211ENST00000513984 NPM1P06748 294 aaKnown RBP eCLIP21.41■■□□□ 1.02
VCAN-211ENST00000513984 ZFYVE16Q7Z3T8 1539 aa21.41■■□□□ 1.02
VCAN-211ENST00000513984 RTEL1-TNFRSF6BF6WH68 1400 aa21.4■■□□□ 1.02
VCAN-211ENST00000513984 ERBINQ96RT1 1412 aa21.4■■□□□ 1.02
VCAN-211ENST00000513984 FAM135AQ9P2D6 1515 aa21.4■■□□□ 1.02
VCAN-211ENST00000513984 INO80Q9ULG1 1556 aaPredicted RBP21.39■■□□□ 1.01
VCAN-211ENST00000513984 IQGAP3Q86VI3 1631 aa21.39■■□□□ 1.01
VCAN-211ENST00000513984 PKD2Q13563 968 aa21.38■■□□□ 1.01
VCAN-211ENST00000513984 MAGI2Q86UL8 1455 aa21.38■■□□□ 1.01
VCAN-211ENST00000513984 CFAP74Q9C0B2 1584 aa21.38■■□□□ 1.01
VCAN-211ENST00000513984 ADGRL1O94910 1474 aa21.35■■□□□ 1.01
VCAN-211ENST00000513984 RIMBP3CA6NJZ7 1639 aa21.35■■□□□ 1.01
VCAN-211ENST00000513984 RIMBP3BA6NNM3 1639 aa21.35■■□□□ 1.01
VCAN-211ENST00000513984 RIMBP3Q9UFD9 1639 aa21.35■■□□□ 1.01
VCAN-211ENST00000513984 L3MBTL2Q969R5 705 aa21.34■■□□□ 1.01
VCAN-211ENST00000513984 ATP7AQ04656 1500 aa21.33■■□□□ 1.01
VCAN-211ENST00000513984 SPAG9O60271 1321 aaKnown RBP21.32■■□□□ 1
VCAN-211ENST00000513984 MIER1Q8N108 512 aa21.3■■□□□ 1
VCAN-211ENST00000513984 SCAPERQ9BY12 1400 aa21.3■■□□□ 1
VCAN-211ENST00000513984 DEPDC5O75140 1603 aa21.3■■□□□ 1
VCAN-211ENST00000513984 AFAP1Q8N556 730 aa21.28■■□□□ 1
VCAN-211ENST00000513984 CD109Q6YHK3 1445 aa21.28■■□□□ 1
VCAN-211ENST00000513984 EIF2AK4Q9P2K8 1649 aaKnown RBP21.27■■□□□ 1
VCAN-211ENST00000513984 KIDINS220Q9ULH0 1771 aa21.26■□□□□ 0.99
VCAN-211ENST00000513984 ZNF518AQ6AHZ1 1483 aa21.25■□□□□ 0.99
VCAN-211ENST00000513984 KDM5CP41229 1560 aa21.24■□□□□ 0.99
VCAN-211ENST00000513984 MAP3K4Q9Y6R4 1608 aa21.23■□□□□ 0.99
VCAN-211ENST00000513984 GLI2P10070 1586 aa21.2■□□□□ 0.98
VCAN-211ENST00000513984 ATP10AO60312 1499 aa21.2■□□□□ 0.98
VCAN-211ENST00000513984 NEO1Q92859 1461 aa21.2■□□□□ 0.98
VCAN-211ENST00000513984 POGZQ7Z3K3 1410 aa21.2■□□□□ 0.98
VCAN-211ENST00000513984 NBPF8Q3BBV2 869 aa21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms