RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 ACIN1Q9UKV3 1341 aaKnown RBP12.41□□□□□ -0.42
RNF4-220ENST00000513578 ITGAEP38570 1179 aa12.41□□□□□ -0.42
RNF4-220ENST00000513578 KDM5BQ9UGL1 1544 aa12.41□□□□□ -0.42
RNF4-220ENST00000513578 NAIPQ13075 1403 aa12.39□□□□□ -0.43
RNF4-220ENST00000513578 ARID3CA6NKF2 412 aa12.39□□□□□ -0.43
RNF4-220ENST00000513578 ZCCHC11Q5TAX3 1644 aaKnown RBP12.39□□□□□ -0.43
RNF4-220ENST00000513578 ROCK1Q13464 1354 aa12.39□□□□□ -0.43
RNF4-220ENST00000513578 CROCC2H7BZ55 1655 aa12.38□□□□□ -0.43
RNF4-220ENST00000513578 ADGBQ8N7X0 1667 aa12.38□□□□□ -0.43
RNF4-220ENST00000513578 PREX2Q70Z35 1606 aa12.38□□□□□ -0.43
RNF4-220ENST00000513578 DAPK1P53355 1430 aa12.37□□□□□ -0.43
RNF4-220ENST00000513578 CAMSAP2Q08AD1 1489 aa12.37□□□□□ -0.43
RNF4-220ENST00000513578 CDC42BPBQ9Y5S2 1711 aa12.37□□□□□ -0.43
RNF4-220ENST00000513578 RIMBP3CA6NJZ7 1639 aa12.36□□□□□ -0.43
RNF4-220ENST00000513578 RIMBP3BA6NNM3 1639 aa12.36□□□□□ -0.43
RNF4-220ENST00000513578 RIMBP3Q9UFD9 1639 aa12.36□□□□□ -0.43
RNF4-220ENST00000513578 MAPKBP1O60336 1514 aa12.36□□□□□ -0.43
RNF4-220ENST00000513578 ABCC5O15440 1437 aa12.36□□□□□ -0.43
RNF4-220ENST00000513578 ARHGEF5Q12774 1597 aa12.35□□□□□ -0.43
RNF4-220ENST00000513578 ADGRL2O95490 1459 aa12.34□□□□□ -0.43
RNF4-220ENST00000513578 MYO5CQ9NQX4 1742 aa12.34□□□□□ -0.43
RNF4-220ENST00000513578 CFDP1Q9UEE9 299 aaPredicted RBP12.33□□□□□ -0.44
RNF4-220ENST00000513578 SHANK2Q9UPX8 1470 aa12.33□□□□□ -0.44
RNF4-220ENST00000513578 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.32□□□□□ -0.44
RNF4-220ENST00000513578 ARAP3Q8WWN8 1544 aa12.31□□□□□ -0.44
RNF4-220ENST00000513578 TTC37Q6PGP7 1564 aa12.3□□□□□ -0.44
RNF4-220ENST00000513578 TIMELESSQ9UNS1 1208 aa12.29□□□□□ -0.44
RNF4-220ENST00000513578 SAMD9LQ8IVG5 1584 aa12.29□□□□□ -0.44
RNF4-220ENST00000513578 PLEKHH2Q8IVE3 1493 aa12.28□□□□□ -0.44
RNF4-220ENST00000513578 MAST1Q9Y2H9 1570 aa12.28□□□□□ -0.44
RNF4-220ENST00000513578 RSPH4AQ5TD94 716 aa12.28□□□□□ -0.44
RNF4-220ENST00000513578 ZNF644Q9H582 1327 aaPredicted RBP12.28□□□□□ -0.44
RNF4-220ENST00000513578 NCOA1Q15788 1441 aa12.27□□□□□ -0.45
RNF4-220ENST00000513578 KIAA1107Q9UPP5 1409 aa12.27□□□□□ -0.45
RNF4-220ENST00000513578 MBD5Q9P267 1494 aa12.27□□□□□ -0.45
RNF4-220ENST00000513578 KDM6BO15054 1643 aa12.26□□□□□ -0.45
RNF4-220ENST00000513578 PLCH2O75038 1416 aa12.26□□□□□ -0.45
RNF4-220ENST00000513578 WDR7Q9Y4E6 1490 aa12.25□□□□□ -0.45
RNF4-220ENST00000513578 ABCA9Q8IUA7 1624 aa12.25□□□□□ -0.45
RNF4-220ENST00000513578 CCDC141Q6ZP82 1450 aa12.24□□□□□ -0.45
RNF4-220ENST00000513578 ANKRD30AQ9BXX3 1397 aa12.24□□□□□ -0.45
RNF4-220ENST00000513578 RRP7BPQ9NSQ0 103 aa12.24□□□□□ -0.45
RNF4-220ENST00000513578 ARHGAP5Q13017 1502 aa12.23□□□□□ -0.45
RNF4-220ENST00000513578 CHIC2Q9UKJ5 165 aa12.23□□□□□ -0.45
RNF4-220ENST00000513578 C9orf84Q5VXU9 1444 aa12.21□□□□□ -0.45
RNF4-220ENST00000513578 ZNF777Q9ULD5 760 aaPredicted RBP12.21□□□□□ -0.45
RNF4-220ENST00000513578 PLXNC1O60486 1568 aa12.21□□□□□ -0.46
RNF4-220ENST00000513578 DENND4BO75064 1496 aaPredicted RBP12.21□□□□□ -0.46
RNF4-220ENST00000513578 ABCC1P33527 1531 aa12.2□□□□□ -0.46
RNF4-220ENST00000513578 TSPY4P0CV99 314 aa12.19□□□□□ -0.46
RNF4-220ENST00000513578 TSPY10P0CW01 314 aa12.19□□□□□ -0.46
RNF4-220ENST00000513578 SYCP2Q9BX26 1530 aa12.19□□□□□ -0.46
RNF4-220ENST00000513578 KDM5DQ9BY66 1539 aa12.19□□□□□ -0.46
RNF4-220ENST00000513578 ZNF316A6NFI3 1004 aaPredicted RBP12.18□□□□□ -0.46
RNF4-220ENST00000513578 EFCAB2Q5VUJ9 269 aa12.18□□□□□ -0.46
RNF4-220ENST00000513578 ASXL2Q76L83 1435 aa12.17□□□□□ -0.46
RNF4-220ENST00000513578 ANKRD50Q9ULJ7 1429 aa12.17□□□□□ -0.46
RNF4-220ENST00000513578 MPHOSPH9Q99550 1183 aa12.16□□□□□ -0.46
RNF4-220ENST00000513578 SOCS7O14512 581 aa12.15□□□□□ -0.46
RNF4-220ENST00000513578 HNRNPMP52272 730 aaKnown RBP eCLIP12.15□□□□□ -0.46
RNF4-220ENST00000513578 PLPPR3Q6T4P5 718 aa12.15□□□□□ -0.46
RNF4-220ENST00000513578 KCNH8Q96L42 1107 aa12.15□□□□□ -0.46
RNF4-220ENST00000513578 ARHGEF12Q9NZN5 1544 aa12.15□□□□□ -0.46
RNF4-220ENST00000513578 PZPP20742 1482 aa12.14□□□□□ -0.47
RNF4-220ENST00000513578 LMTK3Q96Q04 1460 aa12.14□□□□□ -0.47
RNF4-220ENST00000513578 CFAP74Q9C0B2 1584 aa12.14□□□□□ -0.47
RNF4-220ENST00000513578 NPM1P06748 294 aaKnown RBP eCLIP12.14□□□□□ -0.47
RNF4-220ENST00000513578 RTEL1-TNFRSF6BF6WH68 1400 aa12.13□□□□□ -0.47
RNF4-220ENST00000513578 TRIM52Q96A61 297 aa12.13□□□□□ -0.47
RNF4-220ENST00000513578 SIN3AQ96ST3 1273 aa12.13□□□□□ -0.47
RNF4-220ENST00000513578 KIF15Q9NS87 1388 aa12.13□□□□□ -0.47
RNF4-220ENST00000513578 UNC13BO14795 1591 aa12.13□□□□□ -0.47
RNF4-220ENST00000513578 DUOX2Q9NRD8 1548 aa12.12□□□□□ -0.47
RNF4-220ENST00000513578 ANKRD30BQ9BXX2 1392 aa12.11□□□□□ -0.47
RNF4-220ENST00000513578 PPP1R15AO75807 674 aaPredicted RBP12.11□□□□□ -0.47
RNF4-220ENST00000513578 PPP6R1Q9UPN7 881 aa12.11□□□□□ -0.47
RNF4-220ENST00000513578 FANCAO15360 1455 aa12.1□□□□□ -0.47
RNF4-220ENST00000513578 RPRD2Q5VT52 1461 aaKnown RBP12.09□□□□□ -0.47
RNF4-220ENST00000513578 ERBINQ96RT1 1412 aa12.09□□□□□ -0.47
RNF4-220ENST00000513578 GLI2P10070 1586 aa12.09□□□□□ -0.47
RNF4-220ENST00000513578 INO80Q9ULG1 1556 aaPredicted RBP12.09□□□□□ -0.47
RNF4-220ENST00000513578 MAGI2Q86UL8 1455 aa12.08□□□□□ -0.47
RNF4-220ENST00000513578 TONSLQ96HA7 1378 aa12.08□□□□□ -0.48
RNF4-220ENST00000513578 MSH5O43196 834 aa12.08□□□□□ -0.48
RNF4-220ENST00000513578 NEUROD1Q13562 356 aa12.08□□□□□ -0.48
RNF4-220ENST00000513578 TRAPPC8Q9Y2L5 1435 aa12.08□□□□□ -0.48
RNF4-220ENST00000513578 IQGAP3Q86VI3 1631 aa12.08□□□□□ -0.48
RNF4-220ENST00000513578 ZFYVE16Q7Z3T8 1539 aa12.07□□□□□ -0.48
RNF4-220ENST00000513578 PIAS4Q8N2W9 510 aaPredicted RBP12.07□□□□□ -0.48
RNF4-220ENST00000513578 SLC4A1APQ9BWU0 796 aaKnown RBP12.07□□□□□ -0.48
RNF4-220ENST00000513578 ADRA2BP18089 450 aa12.06□□□□□ -0.48
RNF4-220ENST00000513578 POTEDQ86YR6 584 aa12.06□□□□□ -0.48
RNF4-220ENST00000513578 EIF2AK4Q9P2K8 1649 aaKnown RBP12.05□□□□□ -0.48
RNF4-220ENST00000513578 MAP3K4Q9Y6R4 1608 aa12.05□□□□□ -0.48
RNF4-220ENST00000513578 DIEXFQ68CQ4 756 aaKnown RBP12.05□□□□□ -0.48
RNF4-220ENST00000513578 ADGRL1O94910 1474 aa12.05□□□□□ -0.48
RNF4-220ENST00000513578 DEPDC5O75140 1603 aa12.04□□□□□ -0.48
RNF4-220ENST00000513578 NEO1Q92859 1461 aa12.04□□□□□ -0.48
RNF4-220ENST00000513578 ATP7AQ04656 1500 aa12.04□□□□□ -0.48
RNF4-220ENST00000513578 FAM135AQ9P2D6 1515 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms