RNA–Protein interactions for RNA: ENST00000511044.1

PCDH1-206, Transcript of protocadherin 1, humanhuman

TSL 1 (best)

Gene PCDH1, Length 2,674 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-206ENST00000511044 NCOA2Q15596 1464 aa16.28■□□□□ 0.2
PCDH1-206ENST00000511044 RRBP1Q9P2E9 1410 aaKnown RBP16.28■□□□□ 0.2
PCDH1-206ENST00000511044 BCANQ96GW7 911 aa16.27■□□□□ 0.19
PCDH1-206ENST00000511044 UACAQ9BZF9 1416 aa16.26■□□□□ 0.19
PCDH1-206ENST00000511044 CCNB3Q8WWL7 1395 aa16.26■□□□□ 0.19
PCDH1-206ENST00000511044 ATP10BO94823 1461 aa16.25■□□□□ 0.19
PCDH1-206ENST00000511044 KCNH8Q96L42 1107 aa16.25■□□□□ 0.19
PCDH1-206ENST00000511044 EHBP1L1Q8N3D4 1523 aa16.25■□□□□ 0.19
PCDH1-206ENST00000511044 SUPT6HQ7KZ85 1726 aaKnown RBP16.25■□□□□ 0.19
PCDH1-206ENST00000511044 KIF14Q15058 1648 aa16.25■□□□□ 0.19
PCDH1-206ENST00000511044 SALL2Q9Y467 1007 aaPredicted RBP16.24■□□□□ 0.19
PCDH1-206ENST00000511044 RBM19Q9Y4C8 960 aaKnown RBP16.23■□□□□ 0.19
PCDH1-206ENST00000511044 ZNF777Q9ULD5 760 aaPredicted RBP16.22■□□□□ 0.19
PCDH1-206ENST00000511044 CYB5RLQ6IPT4 315 aa16.21■□□□□ 0.18
PCDH1-206ENST00000511044 PLEKHD1A6NEE1 506 aa16.2■□□□□ 0.18
PCDH1-206ENST00000511044 CDK11AQ9UQ88 783 aaPredicted RBP16.2■□□□□ 0.18
PCDH1-206ENST00000511044 ZNF644Q9H582 1327 aaPredicted RBP16.19■□□□□ 0.18
PCDH1-206ENST00000511044 ABCC2Q92887 1545 aa16.19■□□□□ 0.18
PCDH1-206ENST00000511044 FGD6Q6ZV73 1430 aa16.18■□□□□ 0.18
PCDH1-206ENST00000511044 ADCY10Q96PN6 1610 aa16.17■□□□□ 0.18
PCDH1-206ENST00000511044 ARHGEF11O15085 1522 aa16.17■□□□□ 0.18
PCDH1-206ENST00000511044 CHIC2Q9UKJ5 165 aa16.17■□□□□ 0.18
PCDH1-206ENST00000511044 TROQ12816 1431 aaPredicted RBP16.17■□□□□ 0.18
PCDH1-206ENST00000511044 MYOM3Q5VTT5 1437 aa16.16■□□□□ 0.18
PCDH1-206ENST00000511044 FGD1P98174 961 aa16.16■□□□□ 0.18
PCDH1-206ENST00000511044 NPM2Q86SE8 214 aaKnown RBP16.16■□□□□ 0.18
PCDH1-206ENST00000511044 ZCCHC11Q5TAX3 1644 aaKnown RBP16.16■□□□□ 0.18
PCDH1-206ENST00000511044 RAB3GAP2Q9H2M9 1393 aa16.15■□□□□ 0.18
PCDH1-206ENST00000511044 FKBP8Q14318 412 aa16.15■□□□□ 0.18
PCDH1-206ENST00000511044 CCDC136Q96JN2 1154 aa16.15■□□□□ 0.18
PCDH1-206ENST00000511044 BCL11BQ9C0K0 894 aaPredicted RBP16.14■□□□□ 0.17
PCDH1-206ENST00000511044 TAF7LQ5H9L4 462 aa16.13■□□□□ 0.17
PCDH1-206ENST00000511044 ERICH6BQ5W0A0 696 aa16.12■□□□□ 0.17
PCDH1-206ENST00000511044 TAOK2Q9UL54 1235 aa16.12■□□□□ 0.17
PCDH1-206ENST00000511044 PTPN23Q9H3S7 1636 aa16.11■□□□□ 0.17
PCDH1-206ENST00000511044 MSH5O43196 834 aa16.11■□□□□ 0.17
PCDH1-206ENST00000511044 RIMBP3CA6NJZ7 1639 aa16.11■□□□□ 0.17
PCDH1-206ENST00000511044 RIMBP3BA6NNM3 1639 aa16.11■□□□□ 0.17
PCDH1-206ENST00000511044 RIMBP3Q9UFD9 1639 aa16.11■□□□□ 0.17
PCDH1-206ENST00000511044 CFDP1Q9UEE9 299 aaPredicted RBP16.1■□□□□ 0.17
PCDH1-206ENST00000511044 DNAJC5Q9H3Z4 198 aa16.09■□□□□ 0.17
PCDH1-206ENST00000511044 TTC37Q6PGP7 1564 aa16.08■□□□□ 0.16
PCDH1-206ENST00000511044 PTPRKQ15262 1439 aa16.08■□□□□ 0.16
PCDH1-206ENST00000511044 SETD5Q9C0A6 1442 aa16.07■□□□□ 0.16
PCDH1-206ENST00000511044 RRP7BPQ9NSQ0 103 aa16.07■□□□□ 0.16
PCDH1-206ENST00000511044 CDC42BPAQ5VT25 1732 aa16.06■□□□□ 0.16
PCDH1-206ENST00000511044 MAPKBP1O60336 1514 aa16.06■□□□□ 0.16
PCDH1-206ENST00000511044 DDX10Q13206 875 aaKnown RBP16.06■□□□□ 0.16
PCDH1-206ENST00000511044 SIN3AQ96ST3 1273 aa16.06■□□□□ 0.16
PCDH1-206ENST00000511044 GPATCH8Q9UKJ3 1502 aaKnown RBP16.06■□□□□ 0.16
PCDH1-206ENST00000511044 KDM5BQ9UGL1 1544 aa16.05■□□□□ 0.16
PCDH1-206ENST00000511044 NPM1P06748 294 aaKnown RBP eCLIP16.03■□□□□ 0.16
PCDH1-206ENST00000511044 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.02■□□□□ 0.16
PCDH1-206ENST00000511044 UHRF1BP1LA0JNW5 1464 aa16.02■□□□□ 0.15
PCDH1-206ENST00000511044 ABCC10Q5T3U5 1492 aa16.02■□□□□ 0.15
PCDH1-206ENST00000511044 CAMSAP2Q08AD1 1489 aa16.01■□□□□ 0.15
PCDH1-206ENST00000511044 HNRNPMP52272 730 aaKnown RBP eCLIP16.01■□□□□ 0.15
PCDH1-206ENST00000511044 CHMP4AQ9BY43 222 aa16.01■□□□□ 0.15
PCDH1-206ENST00000511044 ASXL2Q76L83 1435 aa16.01■□□□□ 0.15
PCDH1-206ENST00000511044 ITSN2Q9NZM3 1697 aa16■□□□□ 0.15
PCDH1-206ENST00000511044 CDC42BPBQ9Y5S2 1711 aa15.99■□□□□ 0.15
PCDH1-206ENST00000511044 C14orf37Q86TY3 774 aa15.99■□□□□ 0.15
PCDH1-206ENST00000511044 ARHGAP5Q13017 1502 aa15.98■□□□□ 0.15
PCDH1-206ENST00000511044 WDR7Q9Y4E6 1490 aa15.97■□□□□ 0.15
PCDH1-206ENST00000511044 HIRIP3Q9BW71 556 aaPredicted RBP15.97■□□□□ 0.15
PCDH1-206ENST00000511044 MIA2Q96PC5 1412 aa15.96■□□□□ 0.15
PCDH1-206ENST00000511044 MYO5CQ9NQX4 1742 aa15.95■□□□□ 0.14
PCDH1-206ENST00000511044 PPP1R15AO75807 674 aaPredicted RBP15.94■□□□□ 0.14
PCDH1-206ENST00000511044 TCOF1Q13428 1488 aaKnown RBP15.94■□□□□ 0.14
PCDH1-206ENST00000511044 PREX2Q70Z35 1606 aa15.94■□□□□ 0.14
PCDH1-206ENST00000511044 DAPK1P53355 1430 aa15.94■□□□□ 0.14
PCDH1-206ENST00000511044 DHX37Q8IY37 1157 aaKnown RBP15.93■□□□□ 0.14
PCDH1-206ENST00000511044 FANCIQ9NVI1 1328 aa15.93■□□□□ 0.14
PCDH1-206ENST00000511044 ABCC5O15440 1437 aa15.93■□□□□ 0.14
PCDH1-206ENST00000511044 SAMD9LQ8IVG5 1584 aa15.93■□□□□ 0.14
PCDH1-206ENST00000511044 SYCP2Q9BX26 1530 aa15.92■□□□□ 0.14
PCDH1-206ENST00000511044 BRD2P25440 801 aaKnown RBP15.91■□□□□ 0.14
PCDH1-206ENST00000511044 DEKP35659 375 aaKnown RBP15.91■□□□□ 0.14
PCDH1-206ENST00000511044 KDM6BO15054 1643 aa15.91■□□□□ 0.14
PCDH1-206ENST00000511044 AAMPQ13685 434 aa15.91■□□□□ 0.14
PCDH1-206ENST00000511044 ANP32CO43423 234 aa15.91■□□□□ 0.14
PCDH1-206ENST00000511044 KCNA4P22459 653 aa15.91■□□□□ 0.14
PCDH1-206ENST00000511044 DNMT1P26358 1616 aaKnown RBP15.9■□□□□ 0.14
PCDH1-206ENST00000511044 MYT1LQ9UL68 1186 aa15.9■□□□□ 0.14
PCDH1-206ENST00000511044 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.89■□□□□ 0.13
PCDH1-206ENST00000511044 A0A0U1RQG5 324 aaPredicted RBP15.89■□□□□ 0.13
PCDH1-206ENST00000511044 HAP1P54257 671 aaPredicted RBP15.89■□□□□ 0.13
PCDH1-206ENST00000511044 TRIM52Q96A61 297 aa15.89■□□□□ 0.13
PCDH1-206ENST00000511044 NAIPQ13075 1403 aa15.88■□□□□ 0.13
PCDH1-206ENST00000511044 SAMD1Q6SPF0 538 aaPredicted RBP15.87■□□□□ 0.13
PCDH1-206ENST00000511044 CCER2I3L3R5 266 aa15.86■□□□□ 0.13
PCDH1-206ENST00000511044 TSPOAP1O95153 1857 aa15.86■□□□□ 0.13
PCDH1-206ENST00000511044 AFAP1Q8N556 730 aa15.85■□□□□ 0.13
PCDH1-206ENST00000511044 ARHGEF12Q9NZN5 1544 aa15.85■□□□□ 0.13
PCDH1-206ENST00000511044 TPRNQ4KMQ1 711 aa15.85■□□□□ 0.13
PCDH1-206ENST00000511044 HFM1A2PYH4 1435 aa15.85■□□□□ 0.13
PCDH1-206ENST00000511044 PLCH2O75038 1416 aa15.84■□□□□ 0.13
PCDH1-206ENST00000511044 FOXD1Q16676 465 aa15.83■□□□□ 0.13
PCDH1-206ENST00000511044 EFCAB2Q5VUJ9 269 aa15.83■□□□□ 0.13
PCDH1-206ENST00000511044 FANCAO15360 1455 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms