RNA–Protein interactions for RNA: ENST00000509876.5

PHF3-210, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best)

Gene PHF3, Length 7,124 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-210ENST00000509876 PLB1Q6P1J6 1458 aa7.01□□□□□ -1.29
PHF3-210ENST00000509876 TROQ12816 1431 aaPredicted RBP7□□□□□ -1.29
PHF3-210ENST00000509876 PBRM1Q86U86 1689 aa7□□□□□ -1.29
PHF3-210ENST00000509876 EIF4G2P78344 907 aaKnown RBP eCLIP7□□□□□ -1.29
PHF3-210ENST00000509876 CARD11Q9BXL7 1154 aa7□□□□□ -1.29
PHF3-210ENST00000509876 CD109Q6YHK3 1445 aa6.99□□□□□ -1.29
PHF3-210ENST00000509876 ZNF316A6NFI3 1004 aaPredicted RBP6.99□□□□□ -1.29
PHF3-210ENST00000509876 PLEKHG5O94827 1062 aa6.99□□□□□ -1.29
PHF3-210ENST00000509876 NCOA2Q15596 1464 aa6.99□□□□□ -1.29
PHF3-210ENST00000509876 DCAF11Q8TEB1 546 aa6.98□□□□□ -1.29
PHF3-210ENST00000509876 DIEXFQ68CQ4 756 aaKnown RBP6.98□□□□□ -1.29
PHF3-210ENST00000509876 LMOD2Q6P5Q4 547 aa6.98□□□□□ -1.29
PHF3-210ENST00000509876 LRRC9Q6ZRR7 1453 aa6.98□□□□□ -1.29
PHF3-210ENST00000509876 TEX14Q8IWB6 1497 aa6.98□□□□□ -1.29
PHF3-210ENST00000509876 KIF14Q15058 1648 aa6.98□□□□□ -1.29
PHF3-210ENST00000509876 MPHOSPH9Q99550 1183 aa6.97□□□□□ -1.29
PHF3-210ENST00000509876 A0A0G2JS52 829 aa6.96□□□□□ -1.29
PHF3-210ENST00000509876 THOC2Q8NI27 1593 aaKnown RBP6.96□□□□□ -1.29
PHF3-210ENST00000509876 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.96□□□□□ -1.3
PHF3-210ENST00000509876 EPRSP07814 1512 aaKnown RBP6.96□□□□□ -1.3
PHF3-210ENST00000509876 FGD6Q6ZV73 1430 aa6.96□□□□□ -1.3
PHF3-210ENST00000509876 ARAP1Q96P48 1450 aa6.96□□□□□ -1.3
PHF3-210ENST00000509876 KIF15Q9NS87 1388 aa6.96□□□□□ -1.3
PHF3-210ENST00000509876 SCAPERQ9BY12 1400 aa6.96□□□□□ -1.3
PHF3-210ENST00000509876 EIF3AQ14152 1382 aaKnown RBP6.95□□□□□ -1.3
PHF3-210ENST00000509876 SUPT6HQ7KZ85 1726 aaKnown RBP6.95□□□□□ -1.3
PHF3-210ENST00000509876 CLSPNQ9HAW4 1339 aa6.95□□□□□ -1.3
PHF3-210ENST00000509876 CTTNBP2Q8WZ74 1663 aa6.95□□□□□ -1.3
PHF3-210ENST00000509876 STK26Q9P289 416 aa6.94□□□□□ -1.3
PHF3-210ENST00000509876 CANXP27824 592 aaKnown RBP6.94□□□□□ -1.3
PHF3-210ENST00000509876 SRPK2P78362 688 aaKnown RBP6.94□□□□□ -1.3
PHF3-210ENST00000509876 CDK13Q14004 1512 aaKnown RBP6.94□□□□□ -1.3
PHF3-210ENST00000509876 CCDC144AA2RUR9 1427 aa6.94□□□□□ -1.3
PHF3-210ENST00000509876 AFAP1Q8N556 730 aa6.94□□□□□ -1.3
PHF3-210ENST00000509876 ABCA5Q8WWZ7 1642 aa6.93□□□□□ -1.3
PHF3-210ENST00000509876 RAB3GAP2Q9H2M9 1393 aa6.93□□□□□ -1.3
PHF3-210ENST00000509876 WDR43Q15061 677 aaKnown RBP eCLIP6.93□□□□□ -1.3
PHF3-210ENST00000509876 MIA2Q96PC5 1412 aa6.93□□□□□ -1.3
PHF3-210ENST00000509876 ZBTB47Q9UFB7 747 aaPredicted RBP6.93□□□□□ -1.3
PHF3-210ENST00000509876 NUP160Q12769 1436 aa6.93□□□□□ -1.3
PHF3-210ENST00000509876 TMF1P82094 1093 aa6.93□□□□□ -1.3
PHF3-210ENST00000509876 CFAP53Q96M91 514 aa6.93□□□□□ -1.3
PHF3-210ENST00000509876 KNSTRNQ9Y448 316 aa6.93□□□□□ -1.3
PHF3-210ENST00000509876 ADGRL1O94910 1474 aa6.93□□□□□ -1.3
PHF3-210ENST00000509876 VGFO15240 615 aaPredicted RBP6.93□□□□□ -1.3
PHF3-210ENST00000509876 ASXL2Q76L83 1435 aa6.93□□□□□ -1.3
PHF3-210ENST00000509876 TIMELESSQ9UNS1 1208 aa6.93□□□□□ -1.3
PHF3-210ENST00000509876 RAPGEF6Q8TEU7 1601 aa6.92□□□□□ -1.3
PHF3-210ENST00000509876 MYT1Q01538 1121 aa6.92□□□□□ -1.3
PHF3-210ENST00000509876 AKNAQ7Z591 1439 aa6.92□□□□□ -1.3
PHF3-210ENST00000509876 RAPGEF3O95398 923 aa6.92□□□□□ -1.3
PHF3-210ENST00000509876 NPM2Q86SE8 214 aaKnown RBP6.92□□□□□ -1.3
PHF3-210ENST00000509876 UGGT2Q9NYU1 1516 aa6.92□□□□□ -1.3
PHF3-210ENST00000509876 ZNF644Q9H582 1327 aaPredicted RBP6.92□□□□□ -1.3
PHF3-210ENST00000509876 KIAA0556O60303 1618 aa6.92□□□□□ -1.3
PHF3-210ENST00000509876 DENND4BO75064 1496 aaPredicted RBP6.92□□□□□ -1.3
PHF3-210ENST00000509876 PCF11O94913 1555 aaKnown RBP6.91□□□□□ -1.3
PHF3-210ENST00000509876 TARBP1Q13395 1621 aaKnown RBP6.91□□□□□ -1.3
PHF3-210ENST00000509876 TIAM1Q13009 1591 aa6.91□□□□□ -1.3
PHF3-210ENST00000509876 WDR7Q9Y4E6 1490 aa6.91□□□□□ -1.3
PHF3-210ENST00000509876 PHLDB1Q86UU1 1377 aa6.91□□□□□ -1.3
PHF3-210ENST00000509876 FOXD1Q16676 465 aa6.91□□□□□ -1.3
PHF3-210ENST00000509876 HDGFL2Q7Z4V5 671 aaPredicted RBP6.91□□□□□ -1.3
PHF3-210ENST00000509876 SAFB2Q14151 953 aaKnown RBP eCLIP6.91□□□□□ -1.36e-6■■■□□ 18.1
PHF3-210ENST00000509876 ARHGEF11O15085 1522 aa6.91□□□□□ -1.3
PHF3-210ENST00000509876 C9orf84Q5VXU9 1444 aa6.91□□□□□ -1.3
PHF3-210ENST00000509876 SIN3AQ96ST3 1273 aa6.91□□□□□ -1.3
PHF3-210ENST00000509876 ROCK2O75116 1388 aaKnown RBP6.91□□□□□ -1.3
PHF3-210ENST00000509876 NUTM2DQ5VT03 806 aaPredicted RBP6.91□□□□□ -1.3
PHF3-210ENST00000509876 ANKRD50Q9ULJ7 1429 aa6.9□□□□□ -1.3
PHF3-210ENST00000509876 FANCAO15360 1455 aa6.9□□□□□ -1.31
PHF3-210ENST00000509876 CEP170Q5SW79 1584 aa6.89□□□□□ -1.31
PHF3-210ENST00000509876 THEMISQ8N1K5 641 aaPredicted RBP6.89□□□□□ -1.31
PHF3-210ENST00000509876 PAK3O75914 559 aaPredicted RBP6.89□□□□□ -1.31
PHF3-210ENST00000509876 CCDC141Q6ZP82 1450 aa6.88□□□□□ -1.31
PHF3-210ENST00000509876 ABCC2Q92887 1545 aa6.88□□□□□ -1.31
PHF3-210ENST00000509876 PPM1GO15355 546 aaPredicted RBP6.88□□□□□ -1.31
PHF3-210ENST00000509876 DDX10Q13206 875 aaKnown RBP6.88□□□□□ -1.31
PHF3-210ENST00000509876 NUDCQ9Y266 331 aa6.87□□□□□ -1.31
PHF3-210ENST00000509876 CAMSAP2Q08AD1 1489 aa6.86□□□□□ -1.31
PHF3-210ENST00000509876 CHD1O14646 1710 aa6.86□□□□□ -1.31
PHF3-210ENST00000509876 NGDNQ8NEJ9 315 aaKnown RBP6.86□□□□□ -1.31
PHF3-210ENST00000509876 PPP6R1Q9UPN7 881 aa6.86□□□□□ -1.31
PHF3-210ENST00000509876 STAC3Q96MF2 364 aa6.86□□□□□ -1.31
PHF3-210ENST00000509876 DAPK1P53355 1430 aa6.85□□□□□ -1.31
PHF3-210ENST00000509876 ATF3P18847 181 aa6.85□□□□□ -1.31
PHF3-210ENST00000509876 MEX3CQ5U5Q3 659 aaKnown RBP6.85□□□□□ -1.31
PHF3-210ENST00000509876 ANKLE2Q86XL3 938 aa6.85□□□□□ -1.31
PHF3-210ENST00000509876 PNNQ9H307 717 aaKnown RBP6.85□□□□□ -1.31
PHF3-210ENST00000509876 ATP10BO94823 1461 aa6.85□□□□□ -1.31
PHF3-210ENST00000509876 TERF2IPQ9NYB0 399 aa6.85□□□□□ -1.31
PHF3-210ENST00000509876 CCDC9Q9Y3X0 531 aaKnown RBP6.84□□□□□ -1.31
PHF3-210ENST00000509876 TXNDC2Q86VQ3 553 aa6.84□□□□□ -1.31
PHF3-210ENST00000509876 CSB-PGBD3P0DP91 1061 aa6.84□□□□□ -1.31
PHF3-210ENST00000509876 MAP3K1Q13233 1512 aa6.84□□□□□ -1.31
PHF3-210ENST00000509876 PLCH2O75038 1416 aa6.84□□□□□ -1.31
PHF3-210ENST00000509876 HIRIP3Q9BW71 556 aaPredicted RBP6.84□□□□□ -1.31
PHF3-210ENST00000509876 RRBP1Q9P2E9 1410 aaKnown RBP6.84□□□□□ -1.31
PHF3-210ENST00000509876 SLC52A1Q9NWF4 448 aa6.84□□□□□ -1.32
PHF3-210ENST00000509876 DMRT2Q9Y5R5 561 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms