RNA–Protein interactions for RNA: ENST00000509490.5

PDGFRA-208, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-208ENST00000509490 CROCC2H7BZ55 1655 aa12.94□□□□□ -0.34
PDGFRA-208ENST00000509490 ERICH6BQ5W0A0 696 aa12.94□□□□□ -0.34
PDGFRA-208ENST00000509490 NUP153P49790 1475 aaKnown RBP12.94□□□□□ -0.34
PDGFRA-208ENST00000509490 ABCC5O15440 1437 aa12.93□□□□□ -0.34
PDGFRA-208ENST00000509490 SPATA31E1Q6ZUB1 1445 aa12.93□□□□□ -0.34
PDGFRA-208ENST00000509490 MBD5Q9P267 1494 aa12.93□□□□□ -0.34
PDGFRA-208ENST00000509490 WASHC2AQ641Q2 1341 aa12.91□□□□□ -0.34
PDGFRA-208ENST00000509490 MPHOSPH9Q99550 1183 aa12.9□□□□□ -0.34
PDGFRA-208ENST00000509490 GRIN2AQ12879 1464 aa12.9□□□□□ -0.35
PDGFRA-208ENST00000509490 FKBP8Q14318 412 aa12.89□□□□□ -0.35
PDGFRA-208ENST00000509490 MAGI1Q96QZ7 1491 aaPredicted RBP12.88□□□□□ -0.35
PDGFRA-208ENST00000509490 NEFLP07196 543 aa12.88□□□□□ -0.35
PDGFRA-208ENST00000509490 HSPA5P11021 654 aaKnown RBP12.88□□□□□ -0.35
PDGFRA-208ENST00000509490 EIF4G2P78344 907 aaKnown RBP eCLIP12.88□□□□□ -0.35
PDGFRA-208ENST00000509490 PZPP20742 1482 aa12.88□□□□□ -0.35
PDGFRA-208ENST00000509490 TROQ12816 1431 aaPredicted RBP12.88□□□□□ -0.35
PDGFRA-208ENST00000509490 CCDC7Q96M83 1385 aa12.88□□□□□ -0.35
PDGFRA-208ENST00000509490 KDM5DQ9BY66 1539 aa12.87□□□□□ -0.35
PDGFRA-208ENST00000509490 EIF4G3O43432 1585 aaKnown RBP12.87□□□□□ -0.35
PDGFRA-208ENST00000509490 SHANK2Q9UPX8 1470 aa12.87□□□□□ -0.35
PDGFRA-208ENST00000509490 PLPPR3Q6T4P5 718 aa12.85□□□□□ -0.35
PDGFRA-208ENST00000509490 KIF14Q15058 1648 aa12.85□□□□□ -0.35
PDGFRA-208ENST00000509490 CAMSAP2Q08AD1 1489 aa12.84□□□□□ -0.35
PDGFRA-208ENST00000509490 ANP32EQ9BTT0 268 aa12.84□□□□□ -0.35
PDGFRA-208ENST00000509490 RRP7BPQ9NSQ0 103 aa12.84□□□□□ -0.35
PDGFRA-208ENST00000509490 ARID4BQ4LE39 1312 aaPredicted RBP12.83□□□□□ -0.35
PDGFRA-208ENST00000509490 ZNF608Q9ULD9 1512 aaPredicted RBP12.83□□□□□ -0.36
PDGFRA-208ENST00000509490 UHRF1BP1Q6BDS2 1440 aa12.83□□□□□ -0.36
PDGFRA-208ENST00000509490 GPATCH8Q9UKJ3 1502 aaKnown RBP12.83□□□□□ -0.36
PDGFRA-208ENST00000509490 L3MBTL2Q969R5 705 aa12.83□□□□□ -0.36
PDGFRA-208ENST00000509490 HIRIP3Q9BW71 556 aaPredicted RBP12.83□□□□□ -0.36
PDGFRA-208ENST00000509490 ARHGEF12Q9NZN5 1544 aa12.82□□□□□ -0.36
PDGFRA-208ENST00000509490 NUP160Q12769 1436 aa12.82□□□□□ -0.36
PDGFRA-208ENST00000509490 CEP170Q5SW79 1584 aa12.81□□□□□ -0.36
PDGFRA-208ENST00000509490 CDK11AQ9UQ88 783 aaPredicted RBP12.81□□□□□ -0.36
PDGFRA-208ENST00000509490 KIAA1107Q9UPP5 1409 aa12.81□□□□□ -0.36
PDGFRA-208ENST00000509490 SYNJ2O15056 1496 aa12.81□□□□□ -0.36
PDGFRA-208ENST00000509490 ABCA8O94911 1581 aa12.8□□□□□ -0.36
PDGFRA-208ENST00000509490 KDM5CP41229 1560 aa12.8□□□□□ -0.36
PDGFRA-208ENST00000509490 TRIM52Q96A61 297 aa12.79□□□□□ -0.36
PDGFRA-208ENST00000509490 PRKRIP1Q9H875 184 aaPredicted RBP12.79□□□□□ -0.36
PDGFRA-208ENST00000509490 ARHGEF5Q12774 1597 aa12.79□□□□□ -0.36
PDGFRA-208ENST00000509490 CDC42BPAQ5VT25 1732 aa12.78□□□□□ -0.36
PDGFRA-208ENST00000509490 ABCC10Q5T3U5 1492 aa12.78□□□□□ -0.36
PDGFRA-208ENST00000509490 ZBED9Q6R2W3 1325 aa12.78□□□□□ -0.36
PDGFRA-208ENST00000509490 PTPRGP23470 1445 aa12.77□□□□□ -0.36
PDGFRA-208ENST00000509490 RALGAPBQ86X10 1494 aa12.77□□□□□ -0.37
PDGFRA-208ENST00000509490 DNAJC5BQ9UF47 199 aa12.77□□□□□ -0.37
PDGFRA-208ENST00000509490 CHIC2Q9UKJ5 165 aa12.77□□□□□ -0.37
PDGFRA-208ENST00000509490 NBPF8Q3BBV2 869 aa12.76□□□□□ -0.37
PDGFRA-208ENST00000509490 RBM19Q9Y4C8 960 aaKnown RBP12.76□□□□□ -0.37
PDGFRA-208ENST00000509490 DHX29Q7Z478 1369 aaKnown RBP12.75□□□□□ -0.37
PDGFRA-208ENST00000509490 C11orf95C9JLR9 678 aaPredicted RBP12.75□□□□□ -0.37
PDGFRA-208ENST00000509490 FANCIQ9NVI1 1328 aa12.75□□□□□ -0.37
PDGFRA-208ENST00000509490 BCORL1Q5H9F3 1711 aa12.75□□□□□ -0.37
PDGFRA-208ENST00000509490 PRG4Q92954 1404 aaPredicted RBP12.74□□□□□ -0.37
PDGFRA-208ENST00000509490 KIF7Q2M1P5 1343 aa12.74□□□□□ -0.37
PDGFRA-208ENST00000509490 HNRNPUQ00839 825 aaKnown RBP eCLIP12.74□□□□□ -0.37
PDGFRA-208ENST00000509490 CARMIL2Q6F5E8 1435 aa12.73□□□□□ -0.37
PDGFRA-208ENST00000509490 ROCK2O75116 1388 aaKnown RBP12.73□□□□□ -0.37
PDGFRA-208ENST00000509490 ANKRD30AQ9BXX3 1397 aa12.73□□□□□ -0.37
PDGFRA-208ENST00000509490 E9PCH4 1651 aa12.73□□□□□ -0.37
PDGFRA-208ENST00000509490 KTN1Q86UP2 1357 aaKnown RBP12.72□□□□□ -0.37
PDGFRA-208ENST00000509490 SMG6Q86US8 1419 aaKnown RBP12.72□□□□□ -0.37
PDGFRA-208ENST00000509490 BCANQ96GW7 911 aa12.71□□□□□ -0.37
PDGFRA-208ENST00000509490 LAMC1P11047 1609 aa12.71□□□□□ -0.37
PDGFRA-208ENST00000509490 PLB1Q6P1J6 1458 aa12.71□□□□□ -0.37
PDGFRA-208ENST00000509490 RNF123Q5XPI4 1314 aa12.71□□□□□ -0.37
PDGFRA-208ENST00000509490 MAST1Q9Y2H9 1570 aa12.71□□□□□ -0.38
PDGFRA-208ENST00000509490 SLC4A1APQ9BWU0 796 aaKnown RBP12.7□□□□□ -0.38
PDGFRA-208ENST00000509490 PPP4R2Q9NY27 417 aa12.7□□□□□ -0.38
PDGFRA-208ENST00000509490 ZNF644Q9H582 1327 aaPredicted RBP12.7□□□□□ -0.38
PDGFRA-208ENST00000509490 ANKRD50Q9ULJ7 1429 aa12.7□□□□□ -0.38
PDGFRA-208ENST00000509490 ZMYM4Q5VZL5 1548 aa12.67□□□□□ -0.38
PDGFRA-208ENST00000509490 USP47Q96K76 1375 aa12.67□□□□□ -0.38
PDGFRA-208ENST00000509490 CFDP1Q9UEE9 299 aaPredicted RBP12.67□□□□□ -0.38
PDGFRA-208ENST00000509490 PREX2Q70Z35 1606 aa12.67□□□□□ -0.38
PDGFRA-208ENST00000509490 C9orf84Q5VXU9 1444 aa12.67□□□□□ -0.38
PDGFRA-208ENST00000509490 CCDC184Q52MB2 194 aa12.66□□□□□ -0.38
PDGFRA-208ENST00000509490 UNC13BO14795 1591 aa12.66□□□□□ -0.38
PDGFRA-208ENST00000509490 ATP10BO94823 1461 aa12.66□□□□□ -0.38
PDGFRA-208ENST00000509490 INSRP06213 1382 aa12.66□□□□□ -0.38
PDGFRA-208ENST00000509490 PRKCSHP14314 528 aaPredicted RBP12.65□□□□□ -0.38
PDGFRA-208ENST00000509490 FOXD1Q16676 465 aa12.65□□□□□ -0.38
PDGFRA-208ENST00000509490 DAXXQ9UER7 740 aaPredicted RBP12.65□□□□□ -0.38
PDGFRA-208ENST00000509490 MRS2Q9HD23 443 aa12.63□□□□□ -0.39
PDGFRA-208ENST00000509490 LRPPRCP42704 1394 aaKnown RBP12.63□□□□□ -0.39
PDGFRA-208ENST00000509490 TRPM1Q7Z4N2 1603 aa12.63□□□□□ -0.39
PDGFRA-208ENST00000509490 PLXNC1O60486 1568 aa12.63□□□□□ -0.39
PDGFRA-208ENST00000509490 CDC42BPBQ9Y5S2 1711 aa12.62□□□□□ -0.39
PDGFRA-208ENST00000509490 SAMD9LQ8IVG5 1584 aa12.61□□□□□ -0.39
PDGFRA-208ENST00000509490 ATP10AO60312 1499 aa12.61□□□□□ -0.39
PDGFRA-208ENST00000509490 GPRASP1Q5JY77 1395 aa12.61□□□□□ -0.39
PDGFRA-208ENST00000509490 CCDC141Q6ZP82 1450 aa12.61□□□□□ -0.39
PDGFRA-208ENST00000509490 RSPH4AQ5TD94 716 aa12.6□□□□□ -0.39
PDGFRA-208ENST00000509490 RTN4Q9NQC3 1192 aaKnown RBP12.6□□□□□ -0.39
PDGFRA-208ENST00000509490 SHROOM2Q13796 1616 aa12.6□□□□□ -0.39
PDGFRA-208ENST00000509490 MAGI2Q86UL8 1455 aa12.6□□□□□ -0.39
PDGFRA-208ENST00000509490 IQGAP3Q86VI3 1631 aa12.6□□□□□ -0.39
PDGFRA-208ENST00000509490 PKD2Q13563 968 aa12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms