RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 FANCIQ9NVI1 1328 aa14.04□□□□□ -0.16
LIMCH1-208ENST00000508501 RSF1Q96T23 1441 aaPredicted RBP14.03□□□□□ -0.16
LIMCH1-208ENST00000508501 ARGLU1Q9NWB6 273 aaPredicted RBP14.03□□□□□ -0.16
LIMCH1-208ENST00000508501 ATP6V1DQ9Y5K8 247 aa14.03□□□□□ -0.16
LIMCH1-208ENST00000508501 NAP1L2Q9ULW6 460 aaPredicted RBP14.02□□□□□ -0.16
LIMCH1-208ENST00000508501 CEP89Q96ST8 783 aa14.02□□□□□ -0.17
LIMCH1-208ENST00000508501 TPM2P07951 284 aa14.01□□□□□ -0.17
LIMCH1-208ENST00000508501 HDAC5Q9UQL6 1122 aa14.01□□□□□ -0.17
LIMCH1-208ENST00000508501 EEA1Q15075 1411 aa14.01□□□□□ -0.17
LIMCH1-208ENST00000508501 SLKQ9H2G2 1235 aaPredicted RBP14□□□□□ -0.17
LIMCH1-208ENST00000508501 KIF16BQ96L93 1317 aa14□□□□□ -0.17
LIMCH1-208ENST00000508501 TPM1P09493 284 aa13.99□□□□□ -0.17
LIMCH1-208ENST00000508501 TSR1Q2NL82 804 aaKnown RBP13.99□□□□□ -0.17
LIMCH1-208ENST00000508501 DIAPH3Q9NSV4 1193 aa13.99□□□□□ -0.17
LIMCH1-208ENST00000508501 PDE3BQ13370 1112 aa13.98□□□□□ -0.17
LIMCH1-208ENST00000508501 ST18O60284 1047 aa13.98□□□□□ -0.17
LIMCH1-208ENST00000508501 CCDC191Q8NCU4 936 aa13.98□□□□□ -0.17
LIMCH1-208ENST00000508501 CARD11Q9BXL7 1154 aa13.98□□□□□ -0.17
LIMCH1-208ENST00000508501 PODXL2Q9NZ53 605 aa13.98□□□□□ -0.17
LIMCH1-208ENST00000508501 FBLN2P98095 1184 aa13.97□□□□□ -0.17
LIMCH1-208ENST00000508501 FAM43AQ8N2R8 423 aa13.97□□□□□ -0.17
LIMCH1-208ENST00000508501 TAF3Q5VWG9 929 aa13.96□□□□□ -0.17
LIMCH1-208ENST00000508501 CHIC2Q9UKJ5 165 aa13.96□□□□□ -0.17
LIMCH1-208ENST00000508501 DCTN1Q14203 1278 aa13.95□□□□□ -0.18
LIMCH1-208ENST00000508501 RDXP35241 583 aaKnown RBP13.95□□□□□ -0.18
LIMCH1-208ENST00000508501 RCAN3Q9UKA8 241 aa13.95□□□□□ -0.18
LIMCH1-208ENST00000508501 GOLGA6L19H0YKK7 550 aa13.95□□□□□ -0.18
LIMCH1-208ENST00000508501 TULP1O00294 542 aaPredicted RBP13.95□□□□□ -0.18
LIMCH1-208ENST00000508501 AK7Q96M32 723 aa13.95□□□□□ -0.18
LIMCH1-208ENST00000508501 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.94□□□□□ -0.18
LIMCH1-208ENST00000508501 CLIP1P30622 1438 aa13.94□□□□□ -0.18
LIMCH1-208ENST00000508501 HSP90B1P14625 803 aaKnown RBP13.94□□□□□ -0.18
LIMCH1-208ENST00000508501 GOLGA2Q08379 1002 aa13.94□□□□□ -0.18
LIMCH1-208ENST00000508501 SPRYD3Q8NCJ5 442 aa13.94□□□□□ -0.18
LIMCH1-208ENST00000508501 HIRIP3Q9BW71 556 aaPredicted RBP13.94□□□□□ -0.18
LIMCH1-208ENST00000508501 HSP90B2PQ58FF3 399 aa13.93□□□□□ -0.18
LIMCH1-208ENST00000508501 ERCC4Q92889 916 aaPredicted RBP13.92□□□□□ -0.18
LIMCH1-208ENST00000508501 NPM1P06748 294 aaKnown RBP eCLIP13.92□□□□□ -0.18
LIMCH1-208ENST00000508501 FAM13BQ9NYF5 915 aa13.92□□□□□ -0.18
LIMCH1-208ENST00000508501 HMGN5P82970 282 aaKnown RBP13.92□□□□□ -0.18
LIMCH1-208ENST00000508501 DDX49Q9Y6V7 483 aaKnown RBP13.92□□□□□ -0.18
LIMCH1-208ENST00000508501 USP8P40818 1118 aa13.91□□□□□ -0.18
LIMCH1-208ENST00000508501 IPO7O95373 1038 aaKnown RBP13.91□□□□□ -0.18
LIMCH1-208ENST00000508501 BECN2A8MW95 431 aa13.9□□□□□ -0.18
LIMCH1-208ENST00000508501 TMF1P82094 1093 aa13.9□□□□□ -0.18
LIMCH1-208ENST00000508501 NEUROD2Q15784 382 aa13.89□□□□□ -0.19
LIMCH1-208ENST00000508501 RALBP1Q15311 655 aa13.89□□□□□ -0.19
LIMCH1-208ENST00000508501 GPATCH3Q96I76 525 aa13.89□□□□□ -0.19
LIMCH1-208ENST00000508501 PHLDB1Q86UU1 1377 aa13.89□□□□□ -0.19
LIMCH1-208ENST00000508501 CLSTN1O94985 981 aa13.89□□□□□ -0.19
LIMCH1-208ENST00000508501 ARID3CA6NKF2 412 aa13.88□□□□□ -0.19
LIMCH1-208ENST00000508501 RUFY1Q96T51 708 aa13.87□□□□□ -0.19
LIMCH1-208ENST00000508501 TSPYL1Q9H0U9 437 aa13.87□□□□□ -0.19
LIMCH1-208ENST00000508501 DHX8Q14562 1220 aaKnown RBP13.87□□□□□ -0.19
LIMCH1-208ENST00000508501 ISY1Q9ULR0 285 aaKnown RBP13.87□□□□□ -0.19
LIMCH1-208ENST00000508501 FAM161AQ3B820 660 aa13.86□□□□□ -0.19
LIMCH1-208ENST00000508501 ZBTB7CA1YPR0 619 aa13.86□□□□□ -0.19
LIMCH1-208ENST00000508501 MRE11P49959 708 aa13.86□□□□□ -0.19
LIMCH1-208ENST00000508501 H0YHG0 523 aa13.85□□□□□ -0.19
LIMCH1-208ENST00000508501 CENPQQ7L2Z9 268 aaPredicted RBP13.85□□□□□ -0.19
LIMCH1-208ENST00000508501 ANKRD20A12PQ8NF67 263 aa13.85□□□□□ -0.19
LIMCH1-208ENST00000508501 KTN1Q86UP2 1357 aaKnown RBP13.84□□□□□ -0.19
LIMCH1-208ENST00000508501 SF3A1Q15459 793 aaKnown RBP13.84□□□□□ -0.19
LIMCH1-208ENST00000508501 CHMP5Q9NZZ3 219 aa13.84□□□□□ -0.19
LIMCH1-208ENST00000508501 RRP9O43818 475 aaKnown RBP13.84□□□□□ -0.19
LIMCH1-208ENST00000508501 MFAP1P55081 439 aaKnown RBP13.84□□□□□ -0.19
LIMCH1-208ENST00000508501 CCAR2Q8N163 923 aaKnown RBP13.84□□□□□ -0.19
LIMCH1-208ENST00000508501 STK11IPQ8N1F8 1099 aa13.84□□□□□ -0.19
LIMCH1-208ENST00000508501 CCDC39Q9UFE4 941 aa13.84□□□□□ -0.19
LIMCH1-208ENST00000508501 MNS1Q8NEH6 495 aa13.83□□□□□ -0.2
LIMCH1-208ENST00000508501 PPP1R15AO75807 674 aaPredicted RBP13.83□□□□□ -0.2
LIMCH1-208ENST00000508501 CAVIN1Q6NZI2 390 aaKnown RBP13.82□□□□□ -0.2
LIMCH1-208ENST00000508501 ZRSR2Q15696 482 aaKnown RBP13.81□□□□□ -0.2
LIMCH1-208ENST00000508501 TPD52L1Q16890 204 aaPredicted RBP13.81□□□□□ -0.2
LIMCH1-208ENST00000508501 GOLGA3Q08378 1498 aa13.81□□□□□ -0.2
LIMCH1-208ENST00000508501 CCP110O43303 1012 aa13.81□□□□□ -0.2
LIMCH1-208ENST00000508501 LEKR1Q6ZMV7 388 aa13.81□□□□□ -0.2
LIMCH1-208ENST00000508501 HOOK1Q9UJC3 728 aaKnown RBP13.8□□□□□ -0.2
LIMCH1-208ENST00000508501 NEXNQ0ZGT2 675 aa13.8□□□□□ -0.2
LIMCH1-208ENST00000508501 U2SURPO15042 1029 aaKnown RBP13.8□□□□□ -0.2
LIMCH1-208ENST00000508501 HOMER1Q86YM7 354 aa13.8□□□□□ -0.2
LIMCH1-208ENST00000508501 NUCB2P80303 420 aa13.8□□□□□ -0.2
LIMCH1-208ENST00000508501 RRP7BPQ9NSQ0 103 aa13.79□□□□□ -0.2
LIMCH1-208ENST00000508501 PDE4AP27815 886 aa13.79□□□□□ -0.2
LIMCH1-208ENST00000508501 TAOK2Q9UL54 1235 aa13.79□□□□□ -0.2
LIMCH1-208ENST00000508501 RASSF8Q8NHQ8 419 aa13.78□□□□□ -0.2
LIMCH1-208ENST00000508501 GOLGA6L7A0A1B0GV03 622 aa13.78□□□□□ -0.2
LIMCH1-208ENST00000508501 CCDC47Q96A33 483 aaKnown RBP13.78□□□□□ -0.2
LIMCH1-208ENST00000508501 C14orf37Q86TY3 774 aa13.78□□□□□ -0.2
LIMCH1-208ENST00000508501 INCENPQ9NQS7 918 aa13.78□□□□□ -0.2
LIMCH1-208ENST00000508501 MYO6Q9UM54 1294 aa13.78□□□□□ -0.2
LIMCH1-208ENST00000508501 PDCL2Q8N4E4 241 aa13.77□□□□□ -0.21
LIMCH1-208ENST00000508501 CAGE1Q8TC20 777 aa13.77□□□□□ -0.21
LIMCH1-208ENST00000508501 DEF6Q9H4E7 631 aa13.77□□□□□ -0.21
LIMCH1-208ENST00000508501 PATL2C9JE40 543 aaKnown RBP13.77□□□□□ -0.21
LIMCH1-208ENST00000508501 ZNF592Q92610 1267 aa13.76□□□□□ -0.21
LIMCH1-208ENST00000508501 ITPRIPQ8IWB1 547 aa13.76□□□□□ -0.21
LIMCH1-208ENST00000508501 RTF1Q92541 710 aaKnown RBP13.75□□□□□ -0.21
LIMCH1-208ENST00000508501 PRM3Q9NNZ6 103 aa13.75□□□□□ -0.21
LIMCH1-208ENST00000508501 CEP162Q5TB80 1403 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms