RNA–Protein interactions for RNA: ENST00000508173.5

PDE6A-202, Transcript of phosphodiesterase 6A, humanhuman

TSL 1 (best)

Gene PDE6A, Length 5,706 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDE6A-202ENST00000508173 NUDCQ9Y266 331 aa10.4□□□□□ -0.74
PDE6A-202ENST00000508173 MAPK8IP3Q9UPT6 1336 aa10.4□□□□□ -0.74
PDE6A-202ENST00000508173 GGT6Q6P531 493 aa10.38□□□□□ -0.75
PDE6A-202ENST00000508173 DDRGK1Q96HY6 314 aa10.38□□□□□ -0.75
PDE6A-202ENST00000508173 POGZQ7Z3K3 1410 aa10.37□□□□□ -0.75
PDE6A-202ENST00000508173 IFT140Q96RY7 1462 aa10.37□□□□□ -0.75
PDE6A-202ENST00000508173 FGD1P98174 961 aa10.37□□□□□ -0.75
PDE6A-202ENST00000508173 PNNQ9H307 717 aaKnown RBP10.36□□□□□ -0.75
PDE6A-202ENST00000508173 PPP4R2Q9NY27 417 aa10.36□□□□□ -0.75
PDE6A-202ENST00000508173 CCNB3Q8WWL7 1395 aa10.35□□□□□ -0.75
PDE6A-202ENST00000508173 TAOK2Q9UL54 1235 aa10.35□□□□□ -0.75
PDE6A-202ENST00000508173 FHAD1B1AJZ9 1412 aa10.35□□□□□ -0.75
PDE6A-202ENST00000508173 PTPRGP23470 1445 aa10.34□□□□□ -0.75
PDE6A-202ENST00000508173 RGL3Q3MIN7 710 aa10.34□□□□□ -0.75
PDE6A-202ENST00000508173 TRIM44Q96DX7 344 aaPredicted RBP10.34□□□□□ -0.75
PDE6A-202ENST00000508173 MSH5O43196 834 aa10.33□□□□□ -0.76
PDE6A-202ENST00000508173 LAMC3Q9Y6N6 1575 aa10.33□□□□□ -0.76
PDE6A-202ENST00000508173 PAK3O75914 559 aaPredicted RBP10.32□□□□□ -0.76
PDE6A-202ENST00000508173 CHMP4BQ9H444 224 aaKnown RBP10.32□□□□□ -0.76
PDE6A-202ENST00000508173 CEP162Q5TB80 1403 aa10.32□□□□□ -0.76
PDE6A-202ENST00000508173 GAPVD1Q14C86 1478 aa10.32□□□□□ -0.76
PDE6A-202ENST00000508173 KNSTRNQ9Y448 316 aa10.32□□□□□ -0.76
PDE6A-202ENST00000508173 NAP1L2Q9ULW6 460 aaPredicted RBP10.32□□□□□ -0.76
PDE6A-202ENST00000508173 ZNF330Q9Y3S2 320 aaPredicted RBP10.32□□□□□ -0.76
PDE6A-202ENST00000508173 AMER1Q5JTC6 1135 aaPredicted RBP10.31□□□□□ -0.76
PDE6A-202ENST00000508173 SIN3AQ96ST3 1273 aa10.31□□□□□ -0.76
PDE6A-202ENST00000508173 KCNJ4P48050 445 aa10.31□□□□□ -0.76
PDE6A-202ENST00000508173 DNAJC5Q9H3Z4 198 aa10.3□□□□□ -0.76
PDE6A-202ENST00000508173 BICRAQ9NZM4 1560 aa10.3□□□□□ -0.76
PDE6A-202ENST00000508173 SOX12O15370 315 aa10.3□□□□□ -0.76
PDE6A-202ENST00000508173 TPRNQ4KMQ1 711 aa10.3□□□□□ -0.76
PDE6A-202ENST00000508173 GOLGA6L22H0YM25 854 aa10.29□□□□□ -0.76
PDE6A-202ENST00000508173 FTSJ3Q8IY81 847 aaKnown RBP10.29□□□□□ -0.76
PDE6A-202ENST00000508173 GRIN2BQ13224 1484 aa10.29□□□□□ -0.76
PDE6A-202ENST00000508173 RSPH4AQ5TD94 716 aa10.28□□□□□ -0.76
PDE6A-202ENST00000508173 ERICH6BQ5W0A0 696 aa10.28□□□□□ -0.76
PDE6A-202ENST00000508173 KLHL34Q8N239 644 aa10.28□□□□□ -0.76
PDE6A-202ENST00000508173 RTF1Q92541 710 aaKnown RBP10.28□□□□□ -0.76
PDE6A-202ENST00000508173 NESP48681 1621 aa10.28□□□□□ -0.76
PDE6A-202ENST00000508173 FGD5Q6ZNL6 1462 aa10.28□□□□□ -0.76
PDE6A-202ENST00000508173 RAPGEF2Q9Y4G8 1499 aa10.28□□□□□ -0.76
PDE6A-202ENST00000508173 GTF2E1P29083 439 aaPredicted RBP10.28□□□□□ -0.76
PDE6A-202ENST00000508173 CWC22Q9HCG8 908 aaKnown RBP10.27□□□□□ -0.76
PDE6A-202ENST00000508173 GOLGA6L6A8MZA4 724 aa10.27□□□□□ -0.77
PDE6A-202ENST00000508173 BECN1Q14457 450 aa10.27□□□□□ -0.77
PDE6A-202ENST00000508173 ARID3AQ99856 593 aa10.27□□□□□ -0.77
PDE6A-202ENST00000508173 HMGB2P26583 209 aaKnown RBP10.26□□□□□ -0.77
PDE6A-202ENST00000508173 SPRYD3Q8NCJ5 442 aa10.26□□□□□ -0.77
PDE6A-202ENST00000508173 RGS3P49796 1198 aa10.26□□□□□ -0.77
PDE6A-202ENST00000508173 FMN1Q68DA7 1419 aa10.25□□□□□ -0.77
PDE6A-202ENST00000508173 SRPK2P78362 688 aaKnown RBP10.25□□□□□ -0.77
PDE6A-202ENST00000508173 RRP7BPQ9NSQ0 103 aa10.25□□□□□ -0.77
PDE6A-202ENST00000508173 CHMP4AQ9BY43 222 aa10.25□□□□□ -0.77
PDE6A-202ENST00000508173 ATF3P18847 181 aa10.24□□□□□ -0.77
PDE6A-202ENST00000508173 CFTRP13569 1480 aa10.24□□□□□ -0.77
PDE6A-202ENST00000508173 AQRO60306 1485 aaKnown RBP eCLIP10.24□□□□□ -0.77
PDE6A-202ENST00000508173 CNKSR2Q8WXI2 1034 aa10.24□□□□□ -0.77
PDE6A-202ENST00000508173 WASHC2CQ9Y4E1 1318 aa10.23□□□□□ -0.77
PDE6A-202ENST00000508173 U2SURPO15042 1029 aaKnown RBP10.23□□□□□ -0.77
PDE6A-202ENST00000508173 L1TD1Q5T7N2 865 aaKnown RBP10.23□□□□□ -0.77
PDE6A-202ENST00000508173 GNL2Q13823 731 aaKnown RBP10.22□□□□□ -0.77
PDE6A-202ENST00000508173 TAF7LQ5H9L4 462 aa10.22□□□□□ -0.77
PDE6A-202ENST00000508173 SPAG9O60271 1321 aaKnown RBP10.22□□□□□ -0.77
PDE6A-202ENST00000508173 NRDCO43847 1150 aa10.22□□□□□ -0.77
PDE6A-202ENST00000508173 CTDP1Q9Y5B0 961 aaPredicted RBP10.22□□□□□ -0.77
PDE6A-202ENST00000508173 PIP4K2BP78356 416 aa10.22□□□□□ -0.77
PDE6A-202ENST00000508173 HDGFL2Q7Z4V5 671 aaPredicted RBP10.21□□□□□ -0.77
PDE6A-202ENST00000508173 MS4A1P11836 297 aa10.21□□□□□ -0.78
PDE6A-202ENST00000508173 DNTTIP2Q5QJE6 756 aaKnown RBP10.21□□□□□ -0.78
PDE6A-202ENST00000508173 RAD54L2Q9Y4B4 1467 aa10.21□□□□□ -0.78
PDE6A-202ENST00000508173 EVA1CP58658 441 aa10.21□□□□□ -0.78
PDE6A-202ENST00000508173 KIAA2012Q0VF49 1180 aa10.21□□□□□ -0.78
PDE6A-202ENST00000508173 CHAF1AQ13111 956 aaPredicted RBP10.2□□□□□ -0.78
PDE6A-202ENST00000508173 TNIKQ9UKE5 1360 aa10.2□□□□□ -0.78
PDE6A-202ENST00000508173 FRAT2O75474 233 aaPredicted RBP10.19□□□□□ -0.78
PDE6A-202ENST00000508173 GORABQ5T7V8 394 aa10.19□□□□□ -0.78
PDE6A-202ENST00000508173 PTMAP06454 111 aaKnown RBP10.19□□□□□ -0.78
PDE6A-202ENST00000508173 TNNT2P45379 298 aaPredicted RBP10.19□□□□□ -0.78
PDE6A-202ENST00000508173 NEUROD2Q15784 382 aa10.18□□□□□ -0.78
PDE6A-202ENST00000508173 TRIM34Q9BYJ4 488 aa10.18□□□□□ -0.78
PDE6A-202ENST00000508173 TOM1O60784 492 aa10.18□□□□□ -0.78
PDE6A-202ENST00000508173 UNC13AQ9UPW8 1703 aa10.17□□□□□ -0.78
PDE6A-202ENST00000508173 CARD11Q9BXL7 1154 aa10.17□□□□□ -0.78
PDE6A-202ENST00000508173 ANO8Q9HCE9 1232 aaPredicted RBP10.17□□□□□ -0.78
PDE6A-202ENST00000508173 DNMBPQ6XZF7 1577 aa10.17□□□□□ -0.78
PDE6A-202ENST00000508173 GZF1Q9H116 711 aaPredicted RBP10.16□□□□□ -0.78
PDE6A-202ENST00000508173 TOPBP1Q92547 1522 aa10.16□□□□□ -0.78
PDE6A-202ENST00000508173 KIF3BO15066 747 aa10.16□□□□□ -0.78
PDE6A-202ENST00000508173 TIMELESSQ9UNS1 1208 aa10.16□□□□□ -0.78
PDE6A-202ENST00000508173 GOLGA6L4A6NEF3 574 aa10.16□□□□□ -0.78
PDE6A-202ENST00000508173 VPS53Q5VIR6 699 aa10.16□□□□□ -0.78
PDE6A-202ENST00000508173 WASHC2AQ641Q2 1341 aa10.15□□□□□ -0.78
PDE6A-202ENST00000508173 CCDC18Q5T9S5 1454 aa10.15□□□□□ -0.78
PDE6A-202ENST00000508173 PPP1R1BQ9UD71 204 aaPredicted RBP10.15□□□□□ -0.78
PDE6A-202ENST00000508173 IPO9Q96P70 1041 aaKnown RBP10.15□□□□□ -0.78
PDE6A-202ENST00000508173 STK26Q9P289 416 aa10.15□□□□□ -0.78
PDE6A-202ENST00000508173 HDAC5Q9UQL6 1122 aa10.15□□□□□ -0.78
PDE6A-202ENST00000508173 SNAPC4Q5SXM2 1469 aa10.15□□□□□ -0.79
PDE6A-202ENST00000508173 SAFB2Q14151 953 aaKnown RBP eCLIP10.14□□□□□ -0.79
PDE6A-202ENST00000508173 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms