RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 TNNT2P45379 298 aaPredicted RBP18.91■□□□□ 0.62
TCOF1-207ENST00000504761 RSPH4AQ5TD94 716 aa18.9■□□□□ 0.62
TCOF1-207ENST00000504761 SNAPC4Q5SXM2 1469 aa18.89■□□□□ 0.61
TCOF1-207ENST00000504761 POGKQ9P215 609 aa18.89■□□□□ 0.61
TCOF1-207ENST00000504761 MYOM3Q5VTT5 1437 aa18.88■□□□□ 0.61
TCOF1-207ENST00000504761 ABCA10Q8WWZ4 1543 aa18.87■□□□□ 0.61
TCOF1-207ENST00000504761 CDCA8Q53HL2 280 aa18.87■□□□□ 0.61
TCOF1-207ENST00000504761 PPM1GO15355 546 aaPredicted RBP18.86■□□□□ 0.61
TCOF1-207ENST00000504761 NUTM2DQ5VT03 806 aaPredicted RBP18.86■□□□□ 0.61
TCOF1-207ENST00000504761 LAMC3Q9Y6N6 1575 aa18.86■□□□□ 0.61
TCOF1-207ENST00000504761 PRG4Q92954 1404 aaPredicted RBP18.86■□□□□ 0.61
TCOF1-207ENST00000504761 URB2Q14146 1524 aaKnown RBP18.86■□□□□ 0.61
TCOF1-207ENST00000504761 NCOA2Q15596 1464 aa18.85■□□□□ 0.61
TCOF1-207ENST00000504761 STK26Q9P289 416 aa18.85■□□□□ 0.61
TCOF1-207ENST00000504761 PRDM2Q13029 1718 aa18.85■□□□□ 0.61
TCOF1-207ENST00000504761 C14orf37Q86TY3 774 aa18.85■□□□□ 0.61
TCOF1-207ENST00000504761 TMF1P82094 1093 aa18.83■□□□□ 0.61
TCOF1-207ENST00000504761 NEUROD2Q15784 382 aa18.81■□□□□ 0.6
TCOF1-207ENST00000504761 WASHC2CQ9Y4E1 1318 aa18.81■□□□□ 0.6
TCOF1-207ENST00000504761 ZBTB7CA1YPR0 619 aa18.81■□□□□ 0.6
TCOF1-207ENST00000504761 SUPT16HQ9Y5B9 1047 aaKnown RBP18.81■□□□□ 0.6
TCOF1-207ENST00000504761 ZBTB47Q9UFB7 747 aaPredicted RBP18.8■□□□□ 0.6
TCOF1-207ENST00000504761 ROCK2O75116 1388 aaKnown RBP18.8■□□□□ 0.6
TCOF1-207ENST00000504761 CCDC136Q96JN2 1154 aa18.8■□□□□ 0.6
TCOF1-207ENST00000504761 ZNF608Q9ULD9 1512 aaPredicted RBP18.78■□□□□ 0.6
TCOF1-207ENST00000504761 FYCO1Q9BQS8 1478 aa18.78■□□□□ 0.6
TCOF1-207ENST00000504761 AFAP1Q8N556 730 aa18.78■□□□□ 0.6
TCOF1-207ENST00000504761 NPM2Q86SE8 214 aaKnown RBP18.76■□□□□ 0.59
TCOF1-207ENST00000504761 SRPK2P78362 688 aaKnown RBP18.74■□□□□ 0.59
TCOF1-207ENST00000504761 RRBP1Q9P2E9 1410 aaKnown RBP18.73■□□□□ 0.59
TCOF1-207ENST00000504761 ST20-MTHFSA0A0A6YYL1 179 aa18.72■□□□□ 0.59
TCOF1-207ENST00000504761 KIF15Q9NS87 1388 aa18.72■□□□□ 0.59
TCOF1-207ENST00000504761 EFCAB5A4FU69 1503 aa18.71■□□□□ 0.59
TCOF1-207ENST00000504761 FAM69CQ0P6D2 419 aa18.69■□□□□ 0.58
TCOF1-207ENST00000504761 CFAP53Q96M91 514 aa18.69■□□□□ 0.58
TCOF1-207ENST00000504761 KIAA0586Q9BVV6 1533 aa18.68■□□□□ 0.58
TCOF1-207ENST00000504761 CCDC144AA2RUR9 1427 aa18.68■□□□□ 0.58
TCOF1-207ENST00000504761 SOX12O15370 315 aa18.68■□□□□ 0.58
TCOF1-207ENST00000504761 CDK13Q14004 1512 aaKnown RBP18.67■□□□□ 0.58
TCOF1-207ENST00000504761 TIAM1Q13009 1591 aa18.67■□□□□ 0.58
TCOF1-207ENST00000504761 LMOD2Q6P5Q4 547 aa18.66■□□□□ 0.58
TCOF1-207ENST00000504761 CCER2I3L3R5 266 aa18.66■□□□□ 0.58
TCOF1-207ENST00000504761 SYNJ2O15056 1496 aa18.65■□□□□ 0.58
TCOF1-207ENST00000504761 ANKRD50Q9ULJ7 1429 aa18.65■□□□□ 0.58
TCOF1-207ENST00000504761 BIVM-ERCC5R4GMW8 1640 aa18.65■□□□□ 0.58
TCOF1-207ENST00000504761 UACAQ9BZF9 1416 aa18.65■□□□□ 0.58
TCOF1-207ENST00000504761 TRAK1Q9UPV9 953 aa18.65■□□□□ 0.58
TCOF1-207ENST00000504761 U2SURPO15042 1029 aaKnown RBP18.64■□□□□ 0.58
TCOF1-207ENST00000504761 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.64■□□□□ 0.58
TCOF1-207ENST00000504761 RTL5Q5HYW3 569 aaPredicted RBP18.62■□□□□ 0.57
TCOF1-207ENST00000504761 PLB1Q6P1J6 1458 aa18.62■□□□□ 0.57
TCOF1-207ENST00000504761 TROQ12816 1431 aaPredicted RBP18.61■□□□□ 0.57
TCOF1-207ENST00000504761 MORC1Q86VD1 984 aa18.61■□□□□ 0.57
TCOF1-207ENST00000504761 EPRSP07814 1512 aaKnown RBP18.6■□□□□ 0.57
TCOF1-207ENST00000504761 IQGAP2Q13576 1575 aa18.59■□□□□ 0.57
TCOF1-207ENST00000504761 GRIN2AQ12879 1464 aa18.59■□□□□ 0.57
TCOF1-207ENST00000504761 HDGFP51858 240 aaKnown RBP18.59■□□□□ 0.57
TCOF1-207ENST00000504761 PCF11O94913 1555 aaKnown RBP18.58■□□□□ 0.56
TCOF1-207ENST00000504761 LAS1LQ9Y4W2 734 aaKnown RBP18.58■□□□□ 0.56
TCOF1-207ENST00000504761 ARHGAP5Q13017 1502 aa18.57■□□□□ 0.56
TCOF1-207ENST00000504761 ANP32AP39687 249 aaKnown RBP18.57■□□□□ 0.56
TCOF1-207ENST00000504761 KTN1Q86UP2 1357 aaKnown RBP18.55■□□□□ 0.56
TCOF1-207ENST00000504761 NUTM2FA1L443 756 aa18.55■□□□□ 0.56
TCOF1-207ENST00000504761 NUDCQ9Y266 331 aa18.55■□□□□ 0.56
TCOF1-207ENST00000504761 USP47Q96K76 1375 aa18.54■□□□□ 0.56
TCOF1-207ENST00000504761 EHBP1L1Q8N3D4 1523 aa18.54■□□□□ 0.56
TCOF1-207ENST00000504761 A0A0G2JS52 829 aa18.53■□□□□ 0.56
TCOF1-207ENST00000504761 MAPK8IP3Q9UPT6 1336 aa18.53■□□□□ 0.56
TCOF1-207ENST00000504761 CUL7Q14999 1698 aa18.53■□□□□ 0.56
TCOF1-207ENST00000504761 PANK3Q9H999 370 aa18.51■□□□□ 0.55
TCOF1-207ENST00000504761 MIA2Q96PC5 1412 aa18.51■□□□□ 0.55
TCOF1-207ENST00000504761 RAPGEF3O95398 923 aa18.51■□□□□ 0.55
TCOF1-207ENST00000504761 FRAT1Q92837 279 aaPredicted RBP18.5■□□□□ 0.55
TCOF1-207ENST00000504761 HECW1Q76N89 1606 aa18.5■□□□□ 0.55
TCOF1-207ENST00000504761 B4GALNT3Q6L9W6 998 aa18.49■□□□□ 0.55
TCOF1-207ENST00000504761 MAGI1Q96QZ7 1491 aaPredicted RBP18.49■□□□□ 0.55
TCOF1-207ENST00000504761 HFM1A2PYH4 1435 aa18.49■□□□□ 0.55
TCOF1-207ENST00000504761 C9orf84Q5VXU9 1444 aa18.49■□□□□ 0.55
TCOF1-207ENST00000504761 SCAPERQ9BY12 1400 aa18.47■□□□□ 0.55
TCOF1-207ENST00000504761 HAP1P54257 671 aaPredicted RBP18.47■□□□□ 0.55
TCOF1-207ENST00000504761 RALBP1Q15311 655 aa18.47■□□□□ 0.55
TCOF1-207ENST00000504761 PRKRIP1Q9H875 184 aaPredicted RBP18.47■□□□□ 0.55
TCOF1-207ENST00000504761 ARHGEF11O15085 1522 aa18.47■□□□□ 0.55
TCOF1-207ENST00000504761 NBPF8Q3BBV2 869 aa18.46■□□□□ 0.55
TCOF1-207ENST00000504761 NAIPQ13075 1403 aa18.45■□□□□ 0.54
TCOF1-207ENST00000504761 HDGFL2Q7Z4V5 671 aaPredicted RBP18.45■□□□□ 0.54
TCOF1-207ENST00000504761 DAPK1P53355 1430 aa18.45■□□□□ 0.54
TCOF1-207ENST00000504761 VGFO15240 615 aaPredicted RBP18.44■□□□□ 0.54
TCOF1-207ENST00000504761 U2AF1L5P0DN76 240 aaPredicted RBP18.44■□□□□ 0.54
TCOF1-207ENST00000504761 U2AF1Q01081 240 aaKnown RBP eCLIP18.44■□□□□ 0.54
TCOF1-207ENST00000504761 EIF3AQ14152 1382 aaKnown RBP18.44■□□□□ 0.54
TCOF1-207ENST00000504761 NBPF1Q3BBV0 1214 aa18.43■□□□□ 0.54
TCOF1-207ENST00000504761 TMEM132EQ6IEE7 984 aa18.42■□□□□ 0.54
TCOF1-207ENST00000504761 NLRP13Q86W25 1043 aa18.42■□□□□ 0.54
TCOF1-207ENST00000504761 KIF7Q2M1P5 1343 aa18.42■□□□□ 0.54
TCOF1-207ENST00000504761 PAK3O75914 559 aaPredicted RBP18.41■□□□□ 0.54
TCOF1-207ENST00000504761 CCDC146Q8IYE0 955 aa18.41■□□□□ 0.54
TCOF1-207ENST00000504761 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.41■□□□□ 0.54
TCOF1-207ENST00000504761 MINK1Q8N4C8 1332 aaPredicted RBP18.4■□□□□ 0.54
TCOF1-207ENST00000504761 SUPT6HQ7KZ85 1726 aaKnown RBP18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms