RNA–Protein interactions for RNA: ENST00000504531.2

CASC9-201, Transcript of cancer susceptibility 9, humanhuman

TSL 1 (best) BASIC

Gene CASC9, Length 1,164 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CASC9-201ENST00000504531 CCDC88BA6NC98 1476 aa13.93□□□□□ -0.18
CASC9-201ENST00000504531 BBXQ8WY36 941 aaPredicted RBP13.93□□□□□ -0.18
CASC9-201ENST00000504531 PDCD7Q8N8D1 485 aaKnown RBP13.92□□□□□ -0.18
CASC9-201ENST00000504531 MFRPQ9BY79 579 aa13.92□□□□□ -0.18
CASC9-201ENST00000504531 PHF8Q9UPP1 1060 aa13.92□□□□□ -0.18
CASC9-201ENST00000504531 EEA1Q15075 1411 aa13.9□□□□□ -0.18
CASC9-201ENST00000504531 FBXO22Q8NEZ5 403 aa13.88□□□□□ -0.19
CASC9-201ENST00000504531 NKX1-1Q15270 411 aaPredicted RBP13.87□□□□□ -0.19
CASC9-201ENST00000504531 L3MBTL3Q96JM7 780 aaPredicted RBP13.87□□□□□ -0.19
CASC9-201ENST00000504531 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.86□□□□□ -0.19
CASC9-201ENST00000504531 LHX8Q68G74 356 aa13.85□□□□□ -0.19
CASC9-201ENST00000504531 G3V3G9 751 aa13.84□□□□□ -0.19
CASC9-201ENST00000504531 MS4A4AQ96JQ5 239 aa13.84□□□□□ -0.19
CASC9-201ENST00000504531 NCAPD3P42695 1498 aa13.83□□□□□ -0.2
CASC9-201ENST00000504531 ZEB1P37275 1124 aaPredicted RBP13.83□□□□□ -0.2
CASC9-201ENST00000504531 MAMSTRQ6ZN01 415 aa13.82□□□□□ -0.2
CASC9-201ENST00000504531 POTEB2H3BUK9 544 aa13.81□□□□□ -0.2
CASC9-201ENST00000504531 DPY19L2Q6NUT2 758 aa13.8□□□□□ -0.2
CASC9-201ENST00000504531 BOLA1Q9Y3E2 137 aa13.78□□□□□ -0.2
CASC9-201ENST00000504531 ATAD2BQ9ULI0 1458 aa13.77□□□□□ -0.21
CASC9-201ENST00000504531 GTPBP6O43824 516 aaPredicted RBP13.76□□□□□ -0.21
CASC9-201ENST00000504531 SCUBE2Q9NQ36 999 aa13.76□□□□□ -0.21
CASC9-201ENST00000504531 NESP48681 1621 aa13.75□□□□□ -0.21
CASC9-201ENST00000504531 WRNQ14191 1432 aaPredicted RBP eCLIP13.75□□□□□ -0.21
CASC9-201ENST00000504531 SPRYD3Q8NCJ5 442 aa13.74□□□□□ -0.21
CASC9-201ENST00000504531 POTEJP0CG39 1038 aa13.72□□□□□ -0.21
CASC9-201ENST00000504531 C3orf67Q6ZVT6 689 aa13.72□□□□□ -0.21
CASC9-201ENST00000504531 TMEM121BQ9BXQ6 578 aaPredicted RBP13.72□□□□□ -0.21
CASC9-201ENST00000504531 TNIKQ9UKE5 1360 aa13.71□□□□□ -0.21
CASC9-201ENST00000504531 MICALL2Q8IY33 904 aa13.71□□□□□ -0.21
CASC9-201ENST00000504531 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.7□□□□□ -0.22
CASC9-201ENST00000504531 BAZ1BQ9UIG0 1483 aaKnown RBP13.69□□□□□ -0.22
CASC9-201ENST00000504531 FAM9AQ8IZU1 332 aaPredicted RBP13.69□□□□□ -0.22
CASC9-201ENST00000504531 ABCC8Q09428 1581 aa13.68□□□□□ -0.22
CASC9-201ENST00000504531 PPP1R37O75864 691 aa13.68□□□□□ -0.22
CASC9-201ENST00000504531 PAXIP1Q6ZW49 1069 aaPredicted RBP13.67□□□□□ -0.22
CASC9-201ENST00000504531 HMGXB3Q12766 1538 aa13.66□□□□□ -0.22
CASC9-201ENST00000504531 CFAP44Q96MT7 982 aa13.66□□□□□ -0.22
CASC9-201ENST00000504531 OTUD5Q96G74 571 aa13.64□□□□□ -0.23
CASC9-201ENST00000504531 GOLGA3Q08378 1498 aa13.61□□□□□ -0.23
CASC9-201ENST00000504531 PDS5BQ9NTI5 1447 aa13.6□□□□□ -0.23
CASC9-201ENST00000504531 KIF21BO75037 1637 aa13.6□□□□□ -0.23
CASC9-201ENST00000504531 SOGA1O94964 1423 aa13.58□□□□□ -0.24
CASC9-201ENST00000504531 SLAIN1Q8ND83 568 aa13.58□□□□□ -0.24
CASC9-201ENST00000504531 CEP164Q9UPV0 1460 aa13.58□□□□□ -0.24
CASC9-201ENST00000504531 CEP162Q5TB80 1403 aa13.56□□□□□ -0.24
CASC9-201ENST00000504531 PLCB2Q00722 1185 aa13.54□□□□□ -0.24
CASC9-201ENST00000504531 TOP2BQ02880 1626 aa13.53□□□□□ -0.24
CASC9-201ENST00000504531 SYNJ1O43426 1573 aa13.53□□□□□ -0.24
CASC9-201ENST00000504531 BIVM-ERCC5R4GMW8 1640 aa13.53□□□□□ -0.24
CASC9-201ENST00000504531 LAMC3Q9Y6N6 1575 aa13.5□□□□□ -0.25
CASC9-201ENST00000504531 TMC2Q8TDI7 906 aa13.5□□□□□ -0.25
CASC9-201ENST00000504531 THOC2Q8NI27 1593 aaKnown RBP13.49□□□□□ -0.25
CASC9-201ENST00000504531 CADPSQ9ULU8 1353 aa13.48□□□□□ -0.25
CASC9-201ENST00000504531 TMEM92Q6UXU6 159 aa13.47□□□□□ -0.25
CASC9-201ENST00000504531 RUSC2Q8N2Y8 1516 aa13.46□□□□□ -0.25
CASC9-201ENST00000504531 CFTRP13569 1480 aa13.45□□□□□ -0.26
CASC9-201ENST00000504531 PDE4AP27815 886 aa13.45□□□□□ -0.26
CASC9-201ENST00000504531 ERICH3Q5RHP9 1530 aa13.44□□□□□ -0.26
CASC9-201ENST00000504531 C2orf72A6NCS6 295 aa13.44□□□□□ -0.26
CASC9-201ENST00000504531 KIF3CO14782 793 aa13.44□□□□□ -0.26
CASC9-201ENST00000504531 SNPHO15079 494 aa13.44□□□□□ -0.26
CASC9-201ENST00000504531 PPARGC1BQ86YN6 1023 aaKnown RBP13.44□□□□□ -0.26
CASC9-201ENST00000504531 GPHNQ9NQX3 736 aaPredicted RBP13.44□□□□□ -0.26
CASC9-201ENST00000504531 CRISPLD2Q9H0B8 497 aa13.42□□□□□ -0.26
CASC9-201ENST00000504531 MRC2Q9UBG0 1479 aa13.42□□□□□ -0.26
CASC9-201ENST00000504531 UBTFP17480 764 aaKnown RBP13.41□□□□□ -0.26
CASC9-201ENST00000504531 PRDM2Q13029 1718 aa13.4□□□□□ -0.26
CASC9-201ENST00000504531 KIF21AQ7Z4S6 1674 aa13.4□□□□□ -0.26
CASC9-201ENST00000504531 CADPS2Q86UW7 1296 aa13.39□□□□□ -0.27
CASC9-201ENST00000504531 NCKAP5LQ9HCH0 1330 aa13.39□□□□□ -0.27
CASC9-201ENST00000504531 PRXQ9BXM0 1461 aa13.38□□□□□ -0.27
CASC9-201ENST00000504531 FOXK1P85037 733 aa13.38□□□□□ -0.27
CASC9-201ENST00000504531 CLIP1P30622 1438 aa13.37□□□□□ -0.27
CASC9-201ENST00000504531 VPS8Q8N3P4 1428 aa13.37□□□□□ -0.27
CASC9-201ENST00000504531 DOK7Q18PE1 504 aa13.35□□□□□ -0.27
CASC9-201ENST00000504531 LARP6Q9BRS8 491 aaKnown RBP13.35□□□□□ -0.27
CASC9-201ENST00000504531 TSHZ2Q9NRE2 1034 aa13.35□□□□□ -0.27
CASC9-201ENST00000504531 DDX27Q96GQ7 796 aaKnown RBP13.34□□□□□ -0.27
CASC9-201ENST00000504531 HAP1P54257 671 aaPredicted RBP13.33□□□□□ -0.28
CASC9-201ENST00000504531 MFSD10Q14728 455 aa13.33□□□□□ -0.28
CASC9-201ENST00000504531 KIF27Q86VH2 1401 aa13.32□□□□□ -0.28
CASC9-201ENST00000504531 DSG2Q14126 1118 aa13.32□□□□□ -0.28
CASC9-201ENST00000504531 PPP1R15BQ5SWA1 713 aa13.32□□□□□ -0.28
CASC9-201ENST00000504531 CUX1P39880 1505 aa13.31□□□□□ -0.28
CASC9-201ENST00000504531 RIMBP2O15034 1052 aa13.31□□□□□ -0.28
CASC9-201ENST00000504531 PLPP6Q8IY26 295 aa13.31□□□□□ -0.28
CASC9-201ENST00000504531 RAPGEF2Q9Y4G8 1499 aa13.3□□□□□ -0.28
CASC9-201ENST00000504531 WDR62O43379 1518 aa13.3□□□□□ -0.28
CASC9-201ENST00000504531 FANCD2Q9BXW9 1451 aa13.29□□□□□ -0.28
CASC9-201ENST00000504531 ZNF710Q8N1W2 664 aa13.28□□□□□ -0.28
CASC9-201ENST00000504531 WDR70Q9NW82 654 aa13.28□□□□□ -0.28
CASC9-201ENST00000504531 HOXB3P14651 431 aaPredicted RBP13.27□□□□□ -0.29
CASC9-201ENST00000504531 CYB5RLQ6IPT4 315 aa13.27□□□□□ -0.29
CASC9-201ENST00000504531 ZSWIM6Q9HCJ5 1215 aa13.27□□□□□ -0.29
CASC9-201ENST00000504531 SLC34A2O95436 690 aa13.26□□□□□ -0.29
CASC9-201ENST00000504531 CCER1Q8TC90 406 aaPredicted RBP13.24□□□□□ -0.29
CASC9-201ENST00000504531 FAM163AQ96GL9 167 aaPredicted RBP13.24□□□□□ -0.29
CASC9-201ENST00000504531 MAP3K1Q13233 1512 aa13.19□□□□□ -0.3
CASC9-201ENST00000504531 CLSPNQ9HAW4 1339 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms