RNA–Protein interactions for RNA: ENST00000495677.1

COL1A1-209, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 594 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-209ENST00000495677 ARHGEF12Q9NZN5 1544 aa22.68■■□□□ 1.22
COL1A1-209ENST00000495677 SCAPERQ9BY12 1400 aa22.67■■□□□ 1.22
COL1A1-209ENST00000495677 ATP10AO60312 1499 aa22.66■■□□□ 1.22
COL1A1-209ENST00000495677 RANGAP1P46060 587 aaPredicted RBP22.65■■□□□ 1.22
COL1A1-209ENST00000495677 MYO5CQ9NQX4 1742 aa22.65■■□□□ 1.22
COL1A1-209ENST00000495677 PLPPR3Q6T4P5 718 aa22.64■■□□□ 1.21
COL1A1-209ENST00000495677 STRCQ7RTU9 1775 aa22.63■■□□□ 1.21
COL1A1-209ENST00000495677 MLECQ14165 292 aa22.63■■□□□ 1.21
COL1A1-209ENST00000495677 C9orf84Q5VXU9 1444 aa22.62■■□□□ 1.21
COL1A1-209ENST00000495677 CDK13Q14004 1512 aaKnown RBP22.62■■□□□ 1.21
COL1A1-209ENST00000495677 EFCAB2Q5VUJ9 269 aa22.6■■□□□ 1.21
COL1A1-209ENST00000495677 DMRT2Q9Y5R5 561 aa22.6■■□□□ 1.21
COL1A1-209ENST00000495677 KDM5CP41229 1560 aa22.55■■□□□ 1.2
COL1A1-209ENST00000495677 ZNF518AQ6AHZ1 1483 aa22.54■■□□□ 1.2
COL1A1-209ENST00000495677 CDK11AQ9UQ88 783 aaPredicted RBP22.53■■□□□ 1.2
COL1A1-209ENST00000495677 REREQ9P2R6 1566 aa22.53■■□□□ 1.2
COL1A1-209ENST00000495677 FMN1Q68DA7 1419 aa22.52■■□□□ 1.2
COL1A1-209ENST00000495677 CEBPAP49715 358 aaPredicted RBP22.52■■□□□ 1.2
COL1A1-209ENST00000495677 UHRF1BP1Q6BDS2 1440 aa22.49■■□□□ 1.19
COL1A1-209ENST00000495677 KIF14Q15058 1648 aa22.48■■□□□ 1.19
COL1A1-209ENST00000495677 C3P01024 1663 aa22.48■■□□□ 1.19
COL1A1-209ENST00000495677 CDC42BPBQ9Y5S2 1711 aa22.48■■□□□ 1.19
COL1A1-209ENST00000495677 PTPRTO14522 1441 aa22.47■■□□□ 1.19
COL1A1-209ENST00000495677 DIP2CQ9Y2E4 1556 aa22.46■■□□□ 1.19
COL1A1-209ENST00000495677 AFAP1Q8N556 730 aa22.46■■□□□ 1.19
COL1A1-209ENST00000495677 TROQ12816 1431 aaPredicted RBP22.46■■□□□ 1.19
COL1A1-209ENST00000495677 MLH3Q9UHC1 1453 aa22.45■■□□□ 1.18
COL1A1-209ENST00000495677 AGLP35573 1532 aa22.44■■□□□ 1.18
COL1A1-209ENST00000495677 ARHGAP5Q13017 1502 aa22.44■■□□□ 1.18
COL1A1-209ENST00000495677 LRRIQ1Q96JM4 1722 aa22.44■■□□□ 1.18
COL1A1-209ENST00000495677 DISP3Q9P2K9 1392 aa22.43■■□□□ 1.18
COL1A1-209ENST00000495677 SOCS7O14512 581 aa22.43■■□□□ 1.18
COL1A1-209ENST00000495677 ILDR2Q71H61 639 aa22.42■■□□□ 1.18
COL1A1-209ENST00000495677 ARHGAP35Q9NRY4 1499 aa22.41■■□□□ 1.18
COL1A1-209ENST00000495677 CLIP1P30622 1438 aa22.4■■□□□ 1.18
COL1A1-209ENST00000495677 ABCA6Q8N139 1617 aa22.4■■□□□ 1.18
COL1A1-209ENST00000495677 ATP1B4Q9UN42 357 aaPredicted RBP22.4■■□□□ 1.18
COL1A1-209ENST00000495677 IQSEC2Q5JU85 1478 aa22.39■■□□□ 1.17
COL1A1-209ENST00000495677 TRAPPC8Q9Y2L5 1435 aa22.39■■□□□ 1.17
COL1A1-209ENST00000495677 LTBP4Q8N2S1 1624 aa22.37■■□□□ 1.17
COL1A1-209ENST00000495677 PREX2Q70Z35 1606 aa22.36■■□□□ 1.17
COL1A1-209ENST00000495677 KIDINS220Q9ULH0 1771 aa22.36■■□□□ 1.17
COL1A1-209ENST00000495677 ITSN2Q9NZM3 1697 aa22.36■■□□□ 1.17
COL1A1-209ENST00000495677 UBTFP17480 764 aaKnown RBP22.35■■□□□ 1.17
COL1A1-209ENST00000495677 MYT1LQ9UL68 1186 aa22.35■■□□□ 1.17
COL1A1-209ENST00000495677 CNTLNQ9NXG0 1405 aa22.33■■□□□ 1.17
COL1A1-209ENST00000495677 ABCC1P33527 1531 aa22.33■■□□□ 1.17
COL1A1-209ENST00000495677 ESF1Q9H501 851 aaKnown RBP22.33■■□□□ 1.17
COL1A1-209ENST00000495677 MROH2AA6NES4 1674 aa22.33■■□□□ 1.16
COL1A1-209ENST00000495677 CDC42BPAQ5VT25 1732 aa22.31■■□□□ 1.16
COL1A1-209ENST00000495677 NCOA1Q15788 1441 aa22.31■■□□□ 1.16
COL1A1-209ENST00000495677 SPATA31D1Q6ZQQ2 1576 aa22.3■■□□□ 1.16
COL1A1-209ENST00000495677 NPATQ14207 1427 aa22.27■■□□□ 1.16
COL1A1-209ENST00000495677 CCDC18Q5T9S5 1454 aa22.25■■□□□ 1.15
COL1A1-209ENST00000495677 CAMSAP1Q5T5Y3 1602 aa22.23■■□□□ 1.15
COL1A1-209ENST00000495677 CASKIN1Q8WXD9 1431 aa22.22■■□□□ 1.15
COL1A1-209ENST00000495677 SAMD9LQ8IVG5 1584 aa22.21■■□□□ 1.15
COL1A1-209ENST00000495677 ZMYM3Q14202 1370 aa22.21■■□□□ 1.15
COL1A1-209ENST00000495677 SUPT6HQ7KZ85 1726 aaKnown RBP22.2■■□□□ 1.14
COL1A1-209ENST00000495677 ZNF142P52746 1687 aaPredicted RBP22.19■■□□□ 1.14
COL1A1-209ENST00000495677 EHMT2Q96KQ7 1210 aa22.17■■□□□ 1.14
COL1A1-209ENST00000495677 PLA2R1Q13018 1463 aa22.15■■□□□ 1.14
COL1A1-209ENST00000495677 CLTCQ00610 1675 aaKnown RBP22.15■■□□□ 1.14
COL1A1-209ENST00000495677 PKD2Q13563 968 aa22.15■■□□□ 1.14
COL1A1-209ENST00000495677 PLXNC1O60486 1568 aa22.12■■□□□ 1.13
COL1A1-209ENST00000495677 SPAG9O60271 1321 aaKnown RBP22.12■■□□□ 1.13
COL1A1-209ENST00000495677 MYO3AQ8NEV4 1616 aa22.12■■□□□ 1.13
COL1A1-209ENST00000495677 KIAA1107Q9UPP5 1409 aa22.12■■□□□ 1.13
COL1A1-209ENST00000495677 GPATCH8Q9UKJ3 1502 aaKnown RBP22.11■■□□□ 1.13
COL1A1-209ENST00000495677 NCKAP5LQ9HCH0 1330 aa22.11■■□□□ 1.13
COL1A1-209ENST00000495677 TCOF1Q13428 1488 aaKnown RBP22.11■■□□□ 1.13
COL1A1-209ENST00000495677 PPP6R1Q9UPN7 881 aa22.11■■□□□ 1.13
COL1A1-209ENST00000495677 SYCP2Q9BX26 1530 aa22.11■■□□□ 1.13
COL1A1-209ENST00000495677 ATP7AQ04656 1500 aa22.1■■□□□ 1.13
COL1A1-209ENST00000495677 FYCO1Q9BQS8 1478 aa22.09■■□□□ 1.13
COL1A1-209ENST00000495677 ZNF335Q9H4Z2 1342 aaPredicted RBP22.09■■□□□ 1.13
COL1A1-209ENST00000495677 INO80Q9ULG1 1556 aaPredicted RBP22.09■■□□□ 1.13
COL1A1-209ENST00000495677 CEP170BQ9Y4F5 1589 aaPredicted RBP22.09■■□□□ 1.13
COL1A1-209ENST00000495677 PTPRKQ15262 1439 aa22.08■■□□□ 1.13
COL1A1-209ENST00000495677 HNRNPMP52272 730 aaKnown RBP eCLIP22.08■■□□□ 1.13
COL1A1-209ENST00000495677 A2MP01023 1474 aa22.08■■□□□ 1.12
COL1A1-209ENST00000495677 PLEKHH2Q8IVE3 1493 aa22.08■■□□□ 1.12
COL1A1-209ENST00000495677 UBAP1LF5GYI3 381 aa22.07■■□□□ 1.12
COL1A1-209ENST00000495677 ZNF777Q9ULD5 760 aaPredicted RBP22.07■■□□□ 1.12
COL1A1-209ENST00000495677 ADGBQ8N7X0 1667 aa22.07■■□□□ 1.12
COL1A1-209ENST00000495677 CHIC1Q5VXU3 224 aa22.01■■□□□ 1.11
COL1A1-209ENST00000495677 CFDP1Q9UEE9 299 aaPredicted RBP22.01■■□□□ 1.11
COL1A1-209ENST00000495677 DNMT1P26358 1616 aaKnown RBP22■■□□□ 1.11
COL1A1-209ENST00000495677 GGT6Q6P531 493 aa22■■□□□ 1.11
COL1A1-209ENST00000495677 POLR1AO95602 1720 aaPredicted RBP21.99■■□□□ 1.11
COL1A1-209ENST00000495677 A2ML1A8K2U0 1454 aa21.98■■□□□ 1.11
COL1A1-209ENST00000495677 CCNB3Q8WWL7 1395 aa21.96■■□□□ 1.11
COL1A1-209ENST00000495677 RTEL1-TNFRSF6BF6WH68 1400 aa21.95■■□□□ 1.1
COL1A1-209ENST00000495677 CPS1P31327 1500 aa21.94■■□□□ 1.1
COL1A1-209ENST00000495677 MBD5Q9P267 1494 aa21.92■■□□□ 1.1
COL1A1-209ENST00000495677 FAM135AQ9P2D6 1515 aa21.91■■□□□ 1.1
COL1A1-209ENST00000495677 TOM1O60784 492 aa21.91■■□□□ 1.1
COL1A1-209ENST00000495677 NEURL4Q96JN8 1562 aa21.91■■□□□ 1.1
COL1A1-209ENST00000495677 DHX29Q7Z478 1369 aaKnown RBP21.9■■□□□ 1.1
COL1A1-209ENST00000495677 SHANK2Q9UPX8 1470 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms