RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 EHMT2Q96KQ7 1210 aa23.67■■□□□ 1.38
VARS-228ENST00000495010 PLCH2O75038 1416 aa23.66■■□□□ 1.38
VARS-228ENST00000495010 CDK11AQ9UQ88 783 aaPredicted RBP23.65■■□□□ 1.38
VARS-228ENST00000495010 HECW1Q76N89 1606 aa23.65■■□□□ 1.38
VARS-228ENST00000495010 EFCAB2Q5VUJ9 269 aa23.63■■□□□ 1.37
VARS-228ENST00000495010 FMN1Q68DA7 1419 aa23.62■■□□□ 1.37
VARS-228ENST00000495010 FER1L4A9Z1Z3 1794 aa23.59■■□□□ 1.37
VARS-228ENST00000495010 SIGLEC1Q9BZZ2 1709 aa23.59■■□□□ 1.37
VARS-228ENST00000495010 ATP10AO60312 1499 aa23.58■■□□□ 1.37
VARS-228ENST00000495010 MYT1LQ9UL68 1186 aa23.57■■□□□ 1.36
VARS-228ENST00000495010 MYO5CQ9NQX4 1742 aa23.56■■□□□ 1.36
VARS-228ENST00000495010 C9orf84Q5VXU9 1444 aa23.56■■□□□ 1.36
VARS-228ENST00000495010 KIF14Q15058 1648 aa23.51■■□□□ 1.35
VARS-228ENST00000495010 CLIP1P30622 1438 aa23.51■■□□□ 1.35
VARS-228ENST00000495010 ARHGAP35Q9NRY4 1499 aa23.51■■□□□ 1.35
VARS-228ENST00000495010 ZNF518AQ6AHZ1 1483 aa23.5■■□□□ 1.35
VARS-228ENST00000495010 ARHGAP5Q13017 1502 aa23.5■■□□□ 1.35
VARS-228ENST00000495010 ARHGEF12Q9NZN5 1544 aa23.5■■□□□ 1.35
VARS-228ENST00000495010 CERKQ8TCT0 537 aa23.5■■□□□ 1.35
VARS-228ENST00000495010 TROQ12816 1431 aaPredicted RBP23.49■■□□□ 1.35
VARS-228ENST00000495010 CEBPAP49715 358 aaPredicted RBP23.47■■□□□ 1.35
VARS-228ENST00000495010 AFAP1Q8N556 730 aa23.47■■□□□ 1.35
VARS-228ENST00000495010 PREX1Q8TCU6 1659 aa23.44■■□□□ 1.34
VARS-228ENST00000495010 DMRT2Q9Y5R5 561 aa23.42■■□□□ 1.34
VARS-228ENST00000495010 KDM5CP41229 1560 aa23.41■■□□□ 1.34
VARS-228ENST00000495010 ESF1Q9H501 851 aaKnown RBP23.41■■□□□ 1.34
VARS-228ENST00000495010 UHRF1BP1Q6BDS2 1440 aa23.4■■□□□ 1.34
VARS-228ENST00000495010 DIP2CQ9Y2E4 1556 aa23.36■■□□□ 1.33
VARS-228ENST00000495010 CHIC1Q5VXU3 224 aa23.35■■□□□ 1.33
VARS-228ENST00000495010 LRRIQ1Q96JM4 1722 aa23.34■■□□□ 1.33
VARS-228ENST00000495010 CDC42BPBQ9Y5S2 1711 aa23.34■■□□□ 1.33
VARS-228ENST00000495010 MLH3Q9UHC1 1453 aa23.34■■□□□ 1.33
VARS-228ENST00000495010 REREQ9P2R6 1566 aa23.33■■□□□ 1.33
VARS-228ENST00000495010 CCDC18Q5T9S5 1454 aa23.33■■□□□ 1.33
VARS-228ENST00000495010 SETD1BQ9UPS6 1966 aaKnown RBP23.32■■□□□ 1.32
VARS-228ENST00000495010 PREX2Q70Z35 1606 aa23.31■■□□□ 1.32
VARS-228ENST00000495010 ABCA6Q8N139 1617 aa23.31■■□□□ 1.32
VARS-228ENST00000495010 CASKIN1Q8WXD9 1431 aa23.3■■□□□ 1.32
VARS-228ENST00000495010 TRAPPC8Q9Y2L5 1435 aa23.3■■□□□ 1.32
VARS-228ENST00000495010 ABCC1P33527 1531 aa23.29■■□□□ 1.32
VARS-228ENST00000495010 STRCQ7RTU9 1775 aa23.28■■□□□ 1.32
VARS-228ENST00000495010 AGLP35573 1532 aa23.28■■□□□ 1.32
VARS-228ENST00000495010 ITSN2Q9NZM3 1697 aa23.27■■□□□ 1.32
VARS-228ENST00000495010 C3P01024 1663 aa23.26■■□□□ 1.31
VARS-228ENST00000495010 ZNF777Q9ULD5 760 aaPredicted RBP23.26■■□□□ 1.31
VARS-228ENST00000495010 CNTLNQ9NXG0 1405 aa23.24■■□□□ 1.31
VARS-228ENST00000495010 PTPRTO14522 1441 aa23.22■■□□□ 1.31
VARS-228ENST00000495010 KIDINS220Q9ULH0 1771 aa23.2■■□□□ 1.3
VARS-228ENST00000495010 CDC42BPAQ5VT25 1732 aa23.2■■□□□ 1.3
VARS-228ENST00000495010 FYCO1Q9BQS8 1478 aa23.19■■□□□ 1.3
VARS-228ENST00000495010 SPAG9O60271 1321 aaKnown RBP23.18■■□□□ 1.3
VARS-228ENST00000495010 DISP3Q9P2K9 1392 aa23.17■■□□□ 1.3
VARS-228ENST00000495010 SAMD9LQ8IVG5 1584 aa23.16■■□□□ 1.3
VARS-228ENST00000495010 HNRNPMP52272 730 aaKnown RBP eCLIP23.15■■□□□ 1.3
VARS-228ENST00000495010 SYCP2Q9BX26 1530 aa23.13■■□□□ 1.29
VARS-228ENST00000495010 GPATCH8Q9UKJ3 1502 aaKnown RBP23.13■■□□□ 1.29
VARS-228ENST00000495010 NCOA1Q15788 1441 aa23.12■■□□□ 1.29
VARS-228ENST00000495010 CFDP1Q9UEE9 299 aaPredicted RBP23.12■■□□□ 1.29
VARS-228ENST00000495010 ZMYM3Q14202 1370 aa23.12■■□□□ 1.29
VARS-228ENST00000495010 NPATQ14207 1427 aa23.11■■□□□ 1.29
VARS-228ENST00000495010 SUPT6HQ7KZ85 1726 aaKnown RBP23.11■■□□□ 1.29
VARS-228ENST00000495010 MROH2AA6NES4 1674 aa23.1■■□□□ 1.29
VARS-228ENST00000495010 CCNB3Q8WWL7 1395 aa23.1■■□□□ 1.29
VARS-228ENST00000495010 PLEKHH2Q8IVE3 1493 aa23.1■■□□□ 1.29
VARS-228ENST00000495010 CAMSAP1Q5T5Y3 1602 aa23.08■■□□□ 1.28
VARS-228ENST00000495010 ATP7AQ04656 1500 aa23.08■■□□□ 1.28
VARS-228ENST00000495010 KIAA1107Q9UPP5 1409 aa23.08■■□□□ 1.28
VARS-228ENST00000495010 GGT6Q6P531 493 aa23.06■■□□□ 1.28
VARS-228ENST00000495010 LTBP4Q8N2S1 1624 aa23.06■■□□□ 1.28
VARS-228ENST00000495010 MTUS2Q5JR59 1369 aa23.05■■□□□ 1.28
VARS-228ENST00000495010 A2MP01023 1474 aa23.05■■□□□ 1.28
VARS-228ENST00000495010 IQSEC2Q5JU85 1478 aa23.05■■□□□ 1.28
VARS-228ENST00000495010 NCKAP5LQ9HCH0 1330 aa23.04■■□□□ 1.28
VARS-228ENST00000495010 CLTCQ00610 1675 aaKnown RBP23.03■■□□□ 1.28
VARS-228ENST00000495010 ILDR2Q71H61 639 aa23.02■■□□□ 1.28
VARS-228ENST00000495010 INO80Q9ULG1 1556 aaPredicted RBP23.01■■□□□ 1.27
VARS-228ENST00000495010 PKD2Q13563 968 aa23■■□□□ 1.27
VARS-228ENST00000495010 PLXNC1O60486 1568 aa22.99■■□□□ 1.27
VARS-228ENST00000495010 PPP6R1Q9UPN7 881 aa22.99■■□□□ 1.27
VARS-228ENST00000495010 SOCS7O14512 581 aa22.98■■□□□ 1.27
VARS-228ENST00000495010 SPATA31D1Q6ZQQ2 1576 aa22.97■■□□□ 1.27
VARS-228ENST00000495010 PTPRKQ15262 1439 aa22.97■■□□□ 1.27
VARS-228ENST00000495010 MYO3AQ8NEV4 1616 aa22.97■■□□□ 1.27
VARS-228ENST00000495010 ZNF335Q9H4Z2 1342 aaPredicted RBP22.96■■□□□ 1.27
VARS-228ENST00000495010 PLA2R1Q13018 1463 aa22.95■■□□□ 1.26
VARS-228ENST00000495010 ADGBQ8N7X0 1667 aa22.95■■□□□ 1.26
VARS-228ENST00000495010 ZNF142P52746 1687 aaPredicted RBP22.94■■□□□ 1.26
VARS-228ENST00000495010 CEP170BQ9Y4F5 1589 aaPredicted RBP22.94■■□□□ 1.26
VARS-228ENST00000495010 UBAP1LF5GYI3 381 aa22.94■■□□□ 1.26
VARS-228ENST00000495010 ZNF644Q9H582 1327 aaPredicted RBP22.93■■□□□ 1.26
VARS-228ENST00000495010 TIAM1Q13009 1591 aa22.89■■□□□ 1.26
VARS-228ENST00000495010 EHBP1L1Q8N3D4 1523 aa22.89■■□□□ 1.26
VARS-228ENST00000495010 TCOF1Q13428 1488 aaKnown RBP22.89■■□□□ 1.25
VARS-228ENST00000495010 RTEL1-TNFRSF6BF6WH68 1400 aa22.89■■□□□ 1.25
VARS-228ENST00000495010 DHX29Q7Z478 1369 aaKnown RBP22.88■■□□□ 1.25
VARS-228ENST00000495010 MBD5Q9P267 1494 aa22.87■■□□□ 1.25
VARS-228ENST00000495010 A2ML1A8K2U0 1454 aa22.85■■□□□ 1.25
VARS-228ENST00000495010 CEP162Q5TB80 1403 aa22.85■■□□□ 1.25
VARS-228ENST00000495010 KIF3BO15066 747 aa22.85■■□□□ 1.25
VARS-228ENST00000495010 RSPH4AQ5TD94 716 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms