RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PRXQ9BXM0 1461 aa21.39■■□□□ 1.02
CCDC88B-209ENST00000494080 NEUROD2Q15784 382 aa21.39■■□□□ 1.01
CCDC88B-209ENST00000494080 ERICH6BQ5W0A0 696 aa21.38■■□□□ 1.01
CCDC88B-209ENST00000494080 ARID4BQ4LE39 1312 aaPredicted RBP21.38■■□□□ 1.01
CCDC88B-209ENST00000494080 TMF1P82094 1093 aa21.37■■□□□ 1.01
CCDC88B-209ENST00000494080 ZNF644Q9H582 1327 aaPredicted RBP21.36■■□□□ 1.01
CCDC88B-209ENST00000494080 TOP2BQ02880 1626 aa21.35■■□□□ 1.01
CCDC88B-209ENST00000494080 FANCIQ9NVI1 1328 aa21.35■■□□□ 1.01
CCDC88B-209ENST00000494080 LRRC9Q6ZRR7 1453 aa21.34■■□□□ 1.01
CCDC88B-209ENST00000494080 ERICH3Q5RHP9 1530 aa21.33■■□□□ 1.01
CCDC88B-209ENST00000494080 PLEKHG5O94827 1062 aa21.33■■□□□ 1
CCDC88B-209ENST00000494080 HMGXB3Q12766 1538 aa21.32■■□□□ 1
CCDC88B-209ENST00000494080 DNAJC5BQ9UF47 199 aa21.32■■□□□ 1
CCDC88B-209ENST00000494080 KANK1Q14678 1352 aa21.31■■□□□ 1
CCDC88B-209ENST00000494080 MLECQ14165 292 aa21.31■■□□□ 1
CCDC88B-209ENST00000494080 FGD6Q6ZV73 1430 aa21.31■■□□□ 1
CCDC88B-209ENST00000494080 CC2D2AQ9P2K1 1620 aa21.3■■□□□ 1
CCDC88B-209ENST00000494080 KIF3BO15066 747 aa21.3■■□□□ 1
CCDC88B-209ENST00000494080 ANP32BQ92688 251 aaKnown RBP21.3■■□□□ 1
CCDC88B-209ENST00000494080 SAFB2Q14151 953 aaKnown RBP eCLIP21.29■■□□□ 1
CCDC88B-209ENST00000494080 POGKQ9P215 609 aa21.29■■□□□ 1
CCDC88B-209ENST00000494080 ROCK2O75116 1388 aaKnown RBP21.29■■□□□ 1
CCDC88B-209ENST00000494080 PTPRGP23470 1445 aa21.28■■□□□ 1
CCDC88B-209ENST00000494080 IPO9Q96P70 1041 aaKnown RBP21.28■■□□□ 1
CCDC88B-209ENST00000494080 HSP90AA1P07900 732 aaKnown RBP21.28■■□□□ 1
CCDC88B-209ENST00000494080 CFAP53Q96M91 514 aa21.27■■□□□ 1
CCDC88B-209ENST00000494080 ANO8Q9HCE9 1232 aaPredicted RBP21.26■□□□□ 0.99
CCDC88B-209ENST00000494080 POLA1P09884 1462 aaPredicted RBP21.25■□□□□ 0.99
CCDC88B-209ENST00000494080 MYOM3Q5VTT5 1437 aa21.24■□□□□ 0.99
CCDC88B-209ENST00000494080 TOPBP1Q92547 1522 aa21.24■□□□□ 0.99
CCDC88B-209ENST00000494080 SPAG9O60271 1321 aaKnown RBP21.23■□□□□ 0.99
CCDC88B-209ENST00000494080 CASKIN1Q8WXD9 1431 aa21.23■□□□□ 0.99
CCDC88B-209ENST00000494080 RSPH4AQ5TD94 716 aa21.22■□□□□ 0.99
CCDC88B-209ENST00000494080 C14orf37Q86TY3 774 aa21.21■□□□□ 0.99
CCDC88B-209ENST00000494080 ST20-MTHFSA0A0A6YYL1 179 aa21.19■□□□□ 0.98
CCDC88B-209ENST00000494080 BECN1Q14457 450 aa21.19■□□□□ 0.98
CCDC88B-209ENST00000494080 STK26Q9P289 416 aa21.19■□□□□ 0.98
CCDC88B-209ENST00000494080 RGS3P49796 1198 aa21.18■□□□□ 0.98
CCDC88B-209ENST00000494080 NAP1L5Q96NT1 182 aaPredicted RBP21.18■□□□□ 0.98
CCDC88B-209ENST00000494080 RRBP1Q9P2E9 1410 aaKnown RBP21.18■□□□□ 0.98
CCDC88B-209ENST00000494080 NCOA2Q15596 1464 aa21.18■□□□□ 0.98
CCDC88B-209ENST00000494080 ZBTB7CA1YPR0 619 aa21.17■□□□□ 0.98
CCDC88B-209ENST00000494080 U2SURPO15042 1029 aaKnown RBP21.16■□□□□ 0.98
CCDC88B-209ENST00000494080 SRPK2P78362 688 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-209ENST00000494080 KTN1Q86UP2 1357 aaKnown RBP21.14■□□□□ 0.98
CCDC88B-209ENST00000494080 FRAT1Q92837 279 aaPredicted RBP21.14■□□□□ 0.97
CCDC88B-209ENST00000494080 GRIN2BQ13224 1484 aa21.13■□□□□ 0.97
CCDC88B-209ENST00000494080 NUTM2DQ5VT03 806 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-209ENST00000494080 TRIM44Q96DX7 344 aaPredicted RBP21.11■□□□□ 0.97
CCDC88B-209ENST00000494080 UACAQ9BZF9 1416 aa21.11■□□□□ 0.97
CCDC88B-209ENST00000494080 MORC1Q86VD1 984 aa21.11■□□□□ 0.97
CCDC88B-209ENST00000494080 NUDCQ9Y266 331 aa21.1■□□□□ 0.97
CCDC88B-209ENST00000494080 MAPK8IP3Q9UPT6 1336 aa21.1■□□□□ 0.97
CCDC88B-209ENST00000494080 FYCO1Q9BQS8 1478 aa21.09■□□□□ 0.97
CCDC88B-209ENST00000494080 UNC13AQ9UPW8 1703 aa21.08■□□□□ 0.96
CCDC88B-209ENST00000494080 CCDC144AA2RUR9 1427 aa21.08■□□□□ 0.96
CCDC88B-209ENST00000494080 RALBP1Q15311 655 aa21.07■□□□□ 0.96
CCDC88B-209ENST00000494080 PRKRIP1Q9H875 184 aaPredicted RBP21.07■□□□□ 0.96
CCDC88B-209ENST00000494080 TCERG1O14776 1098 aaKnown RBP21.07■□□□□ 0.96
CCDC88B-209ENST00000494080 PRDM2Q13029 1718 aa21.05■□□□□ 0.96
CCDC88B-209ENST00000494080 PEG3Q9GZU2 1588 aa21.04■□□□□ 0.96
CCDC88B-209ENST00000494080 WASHC2CQ9Y4E1 1318 aa21.04■□□□□ 0.96
CCDC88B-209ENST00000494080 FTSJ3Q8IY81 847 aaKnown RBP21.04■□□□□ 0.96
CCDC88B-209ENST00000494080 USP47Q96K76 1375 aa21.03■□□□□ 0.96
CCDC88B-209ENST00000494080 SOX12O15370 315 aa21.03■□□□□ 0.96
CCDC88B-209ENST00000494080 DNMBPQ6XZF7 1577 aa21.02■□□□□ 0.95
CCDC88B-209ENST00000494080 KIF15Q9NS87 1388 aa21.01■□□□□ 0.95
CCDC88B-209ENST00000494080 MSH5O43196 834 aa21■□□□□ 0.95
CCDC88B-209ENST00000494080 NLRP13Q86W25 1043 aa21■□□□□ 0.95
CCDC88B-209ENST00000494080 MYH16Q9H6N6 1097 aa21■□□□□ 0.95
CCDC88B-209ENST00000494080 MRC2Q9UBG0 1479 aa21■□□□□ 0.95
CCDC88B-209ENST00000494080 TIAM1Q13009 1591 aa21■□□□□ 0.95
CCDC88B-209ENST00000494080 TRAK1Q9UPV9 953 aa20.99■□□□□ 0.95
CCDC88B-209ENST00000494080 TRHP20396 242 aaPredicted RBP20.99■□□□□ 0.95
CCDC88B-209ENST00000494080 RCAN3Q9UKA8 241 aa20.99■□□□□ 0.95
CCDC88B-209ENST00000494080 PANK3Q9H999 370 aa20.98■□□□□ 0.95
CCDC88B-209ENST00000494080 USP35Q9P2H5 1018 aa20.97■□□□□ 0.95
CCDC88B-209ENST00000494080 EFCAB5A4FU69 1503 aa20.97■□□□□ 0.95
CCDC88B-209ENST00000494080 ANKRD50Q9ULJ7 1429 aa20.97■□□□□ 0.95
CCDC88B-209ENST00000494080 ABCA10Q8WWZ4 1543 aa20.96■□□□□ 0.95
CCDC88B-209ENST00000494080 CYB5RLQ6IPT4 315 aa20.95■□□□□ 0.95
CCDC88B-209ENST00000494080 LMOD2Q6P5Q4 547 aa20.95■□□□□ 0.95
CCDC88B-209ENST00000494080 PRG4Q92954 1404 aaPredicted RBP20.95■□□□□ 0.94
CCDC88B-209ENST00000494080 U2AF1L5P0DN76 240 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-209ENST00000494080 U2AF1Q01081 240 aaKnown RBP eCLIP20.93■□□□□ 0.94
CCDC88B-209ENST00000494080 PAK3O75914 559 aaPredicted RBP20.93■□□□□ 0.94
CCDC88B-209ENST00000494080 KIF7Q2M1P5 1343 aa20.92■□□□□ 0.94
CCDC88B-209ENST00000494080 CCDC146Q8IYE0 955 aa20.92■□□□□ 0.94
CCDC88B-209ENST00000494080 IFT140Q96RY7 1462 aa20.92■□□□□ 0.94
CCDC88B-209ENST00000494080 AFAP1Q8N556 730 aa20.92■□□□□ 0.94
CCDC88B-209ENST00000494080 PDE4AP27815 886 aa20.92■□□□□ 0.94
CCDC88B-209ENST00000494080 OSCARQ8IYS5 282 aa20.92■□□□□ 0.94
CCDC88B-209ENST00000494080 WASHC2AQ641Q2 1341 aa20.91■□□□□ 0.94
CCDC88B-209ENST00000494080 ZBED9Q6R2W3 1325 aa20.91■□□□□ 0.94
CCDC88B-209ENST00000494080 SNAPC4Q5SXM2 1469 aa20.91■□□□□ 0.94
CCDC88B-209ENST00000494080 L1TD1Q5T7N2 865 aaKnown RBP20.9■□□□□ 0.94
CCDC88B-209ENST00000494080 IL27Q8NEV9 243 aa20.89■□□□□ 0.94
CCDC88B-209ENST00000494080 SLC4A3P48751 1232 aa20.89■□□□□ 0.93
CCDC88B-209ENST00000494080 GSE1Q14687 1217 aa20.89■□□□□ 0.93
CCDC88B-209ENST00000494080 EIF3AQ14152 1382 aaKnown RBP20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms