RNA–Protein interactions for RNA: ENST00000494047.5

RFC4-214, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 1,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-214ENST00000494047 MYOM3Q5VTT5 1437 aa16.4■□□□□ 0.22
RFC4-214ENST00000494047 TEX14Q8IWB6 1497 aa16.4■□□□□ 0.22
RFC4-214ENST00000494047 MAP3K4Q9Y6R4 1608 aa16.4■□□□□ 0.22
RFC4-214ENST00000494047 PTPN23Q9H3S7 1636 aa16.37■□□□□ 0.21
RFC4-214ENST00000494047 GCC2Q8IWJ2 1684 aa16.37■□□□□ 0.21
RFC4-214ENST00000494047 NUP153P49790 1475 aaKnown RBP16.37■□□□□ 0.21
RFC4-214ENST00000494047 FAM50AQ14320 339 aaKnown RBP16.37■□□□□ 0.21
RFC4-214ENST00000494047 YTHDC1Q96MU7 727 aaKnown RBP16.37■□□□□ 0.21
RFC4-214ENST00000494047 KDM6BO15054 1643 aa16.36■□□□□ 0.21
RFC4-214ENST00000494047 TCOF1Q13428 1488 aaKnown RBP16.36■□□□□ 0.21
RFC4-214ENST00000494047 KCNH8Q96L42 1107 aa16.36■□□□□ 0.21
RFC4-214ENST00000494047 PPRC1Q5VV67 1664 aaKnown RBP16.35■□□□□ 0.21
RFC4-214ENST00000494047 NCOA2Q15596 1464 aa16.35■□□□□ 0.21
RFC4-214ENST00000494047 MIA2Q96PC5 1412 aa16.34■□□□□ 0.21
RFC4-214ENST00000494047 CD109Q6YHK3 1445 aa16.34■□□□□ 0.21
RFC4-214ENST00000494047 MAGI3Q5TCQ9 1506 aa16.33■□□□□ 0.21
RFC4-214ENST00000494047 PLEKHD1A6NEE1 506 aa16.33■□□□□ 0.2
RFC4-214ENST00000494047 ARID3CA6NKF2 412 aa16.32■□□□□ 0.2
RFC4-214ENST00000494047 ITGAEP38570 1179 aa16.31■□□□□ 0.2
RFC4-214ENST00000494047 LRRIQ1Q96JM4 1722 aa16.31■□□□□ 0.2
RFC4-214ENST00000494047 TONSLQ96HA7 1378 aa16.29■□□□□ 0.2
RFC4-214ENST00000494047 ABCA9Q8IUA7 1624 aa16.29■□□□□ 0.2
RFC4-214ENST00000494047 CDK11AQ9UQ88 783 aaPredicted RBP16.28■□□□□ 0.2
RFC4-214ENST00000494047 CCER2I3L3R5 266 aa16.27■□□□□ 0.2
RFC4-214ENST00000494047 NAIPQ13075 1403 aa16.25■□□□□ 0.19
RFC4-214ENST00000494047 PPP1R15AO75807 674 aaPredicted RBP16.24■□□□□ 0.19
RFC4-214ENST00000494047 ATP1B4Q9UN42 357 aaPredicted RBP16.24■□□□□ 0.19
RFC4-214ENST00000494047 NEO1Q92859 1461 aa16.21■□□□□ 0.19
RFC4-214ENST00000494047 CDK13Q14004 1512 aaKnown RBP16.2■□□□□ 0.18
RFC4-214ENST00000494047 ROCK1Q13464 1354 aa16.2■□□□□ 0.18
RFC4-214ENST00000494047 ARAP3Q8WWN8 1544 aa16.2■□□□□ 0.18
RFC4-214ENST00000494047 COL17A1Q9UMD9 1497 aaPredicted RBP16.19■□□□□ 0.18
RFC4-214ENST00000494047 ITSN2Q9NZM3 1697 aa16.17■□□□□ 0.18
RFC4-214ENST00000494047 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.16■□□□□ 0.18
RFC4-214ENST00000494047 ANP32CO43423 234 aa16.16■□□□□ 0.18
RFC4-214ENST00000494047 CFAP74Q9C0B2 1584 aa16.15■□□□□ 0.18
RFC4-214ENST00000494047 TROQ12816 1431 aaPredicted RBP16.15■□□□□ 0.18
RFC4-214ENST00000494047 DNMT1P26358 1616 aaKnown RBP16.14■□□□□ 0.17
RFC4-214ENST00000494047 KIF14Q15058 1648 aa16.12■□□□□ 0.17
RFC4-214ENST00000494047 PLCH2O75038 1416 aa16.11■□□□□ 0.17
RFC4-214ENST00000494047 PTPRKQ15262 1439 aa16.11■□□□□ 0.17
RFC4-214ENST00000494047 FANCAO15360 1455 aa16.11■□□□□ 0.17
RFC4-214ENST00000494047 TTC37Q6PGP7 1564 aa16.11■□□□□ 0.17
RFC4-214ENST00000494047 SUPT16HQ9Y5B9 1047 aaKnown RBP16.11■□□□□ 0.17
RFC4-214ENST00000494047 SIN3AQ96ST3 1273 aa16.09■□□□□ 0.17
RFC4-214ENST00000494047 ADGBQ8N7X0 1667 aa16.09■□□□□ 0.17
RFC4-214ENST00000494047 MYO5CQ9NQX4 1742 aa16.09■□□□□ 0.17
RFC4-214ENST00000494047 POLR1AO95602 1720 aaPredicted RBP16.07■□□□□ 0.16
RFC4-214ENST00000494047 NEFLP07196 543 aa16.07■□□□□ 0.16
RFC4-214ENST00000494047 EFCAB2Q5VUJ9 269 aa16.07■□□□□ 0.16
RFC4-214ENST00000494047 DENND4BO75064 1496 aaPredicted RBP16.06■□□□□ 0.16
RFC4-214ENST00000494047 DDX10Q13206 875 aaKnown RBP16.04■□□□□ 0.16
RFC4-214ENST00000494047 DAPK1P53355 1430 aa16.04■□□□□ 0.16
RFC4-214ENST00000494047 RAPGEF3O95398 923 aa16.03■□□□□ 0.16
RFC4-214ENST00000494047 ADGRL1O94910 1474 aa16.01■□□□□ 0.15
RFC4-214ENST00000494047 RPRD2Q5VT52 1461 aaKnown RBP16.01■□□□□ 0.15
RFC4-214ENST00000494047 RICTORQ6R327 1708 aa16.01■□□□□ 0.15
RFC4-214ENST00000494047 ADGRL2O95490 1459 aa16.01■□□□□ 0.15
RFC4-214ENST00000494047 KDM4FA0A1W2PPD8 638 aa16■□□□□ 0.15
RFC4-214ENST00000494047 ARHGAP5Q13017 1502 aa16■□□□□ 0.15
RFC4-214ENST00000494047 CROCC2H7BZ55 1655 aa16■□□□□ 0.15
RFC4-214ENST00000494047 MAGI2Q86UL8 1455 aa16■□□□□ 0.15
RFC4-214ENST00000494047 FRMPD1Q5SYB0 1578 aa16■□□□□ 0.15
RFC4-214ENST00000494047 SCAPERQ9BY12 1400 aa16■□□□□ 0.15
RFC4-214ENST00000494047 ZMYM4Q5VZL5 1548 aa15.99■□□□□ 0.15
RFC4-214ENST00000494047 PREX2Q70Z35 1606 aa15.98■□□□□ 0.15
RFC4-214ENST00000494047 SHANK2Q9UPX8 1470 aa15.98■□□□□ 0.15
RFC4-214ENST00000494047 EIF4G2P78344 907 aaKnown RBP eCLIP15.98■□□□□ 0.15
RFC4-214ENST00000494047 ERICH6BQ5W0A0 696 aa15.98■□□□□ 0.15
RFC4-214ENST00000494047 CDC42BPBQ9Y5S2 1711 aa15.98■□□□□ 0.15
RFC4-214ENST00000494047 POGZQ7Z3K3 1410 aa15.96■□□□□ 0.15
RFC4-214ENST00000494047 CNTLNQ9NXG0 1405 aa15.95■□□□□ 0.14
RFC4-214ENST00000494047 ZNF518AQ6AHZ1 1483 aa15.95■□□□□ 0.14
RFC4-214ENST00000494047 CDC42BPAQ5VT25 1732 aa15.95■□□□□ 0.14
RFC4-214ENST00000494047 ARHGEF40Q8TER5 1519 aa15.94■□□□□ 0.14
RFC4-214ENST00000494047 MPHOSPH9Q99550 1183 aa15.93■□□□□ 0.14
RFC4-214ENST00000494047 ABCC5O15440 1437 aa15.93■□□□□ 0.14
RFC4-214ENST00000494047 ARID4BQ4LE39 1312 aaPredicted RBP15.93■□□□□ 0.14
RFC4-214ENST00000494047 CAMSAP2Q08AD1 1489 aa15.92■□□□□ 0.14
RFC4-214ENST00000494047 ZFYVE16Q7Z3T8 1539 aa15.92■□□□□ 0.14
RFC4-214ENST00000494047 GPATCH8Q9UKJ3 1502 aaKnown RBP15.92■□□□□ 0.14
RFC4-214ENST00000494047 ANKRD30BQ9BXX2 1392 aa15.92■□□□□ 0.14
RFC4-214ENST00000494047 NCOA1Q15788 1441 aa15.91■□□□□ 0.14
RFC4-214ENST00000494047 TRIM52Q96A61 297 aa15.91■□□□□ 0.14
RFC4-214ENST00000494047 PLEKHH2Q8IVE3 1493 aa15.9■□□□□ 0.14
RFC4-214ENST00000494047 KDM5CP41229 1560 aa15.9■□□□□ 0.14
RFC4-214ENST00000494047 CFDP1Q9UEE9 299 aaPredicted RBP15.89■□□□□ 0.13
RFC4-214ENST00000494047 ABCC1P33527 1531 aa15.89■□□□□ 0.13
RFC4-214ENST00000494047 KDM5DQ9BY66 1539 aa15.89■□□□□ 0.13
RFC4-214ENST00000494047 ARHGEF12Q9NZN5 1544 aa15.89■□□□□ 0.13
RFC4-214ENST00000494047 ANKRD30AQ9BXX3 1397 aa15.88■□□□□ 0.13
RFC4-214ENST00000494047 RRP7BPQ9NSQ0 103 aa15.87■□□□□ 0.13
RFC4-214ENST00000494047 KIAA1107Q9UPP5 1409 aa15.87■□□□□ 0.13
RFC4-214ENST00000494047 ATP10AO60312 1499 aa15.86■□□□□ 0.13
RFC4-214ENST00000494047 MLH3Q9UHC1 1453 aa15.86■□□□□ 0.13
RFC4-214ENST00000494047 AFAP1Q8N556 730 aa15.86■□□□□ 0.13
RFC4-214ENST00000494047 YEATS2Q9ULM3 1422 aa15.85■□□□□ 0.13
RFC4-214ENST00000494047 ARHGEF5Q12774 1597 aa15.85■□□□□ 0.13
RFC4-214ENST00000494047 HECW2Q9P2P5 1572 aa15.85■□□□□ 0.13
RFC4-214ENST00000494047 ZNF777Q9ULD5 760 aaPredicted RBP15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms