RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 EFCAB5A4FU69 1503 aa17.37■□□□□ 0.37
PDLIM1-205ENST00000493949 MAGI2Q86UL8 1455 aa17.36■□□□□ 0.37
PDLIM1-205ENST00000493949 ZFYVE16Q7Z3T8 1539 aa17.35■□□□□ 0.37
PDLIM1-205ENST00000493949 FAM9AQ8IZU1 332 aaPredicted RBP17.34■□□□□ 0.37
PDLIM1-205ENST00000493949 ARHGEF12Q9NZN5 1544 aa17.34■□□□□ 0.37
PDLIM1-205ENST00000493949 RAPGEF6Q8TEU7 1601 aa17.33■□□□□ 0.37
PDLIM1-205ENST00000493949 IQSEC2Q5JU85 1478 aa17.33■□□□□ 0.37
PDLIM1-205ENST00000493949 ARID3CA6NKF2 412 aa17.33■□□□□ 0.36
PDLIM1-205ENST00000493949 PTPRTO14522 1441 aa17.3■□□□□ 0.36
PDLIM1-205ENST00000493949 LTBP4Q8N2S1 1624 aa17.29■□□□□ 0.36
PDLIM1-205ENST00000493949 CACNB1Q02641 598 aaPredicted RBP17.29■□□□□ 0.36
PDLIM1-205ENST00000493949 SAMD9Q5K651 1589 aa17.28■□□□□ 0.36
PDLIM1-205ENST00000493949 PRXQ9BXM0 1461 aa17.28■□□□□ 0.36
PDLIM1-205ENST00000493949 HECW1Q76N89 1606 aa17.28■□□□□ 0.36
PDLIM1-205ENST00000493949 NUP153P49790 1475 aaKnown RBP17.25■□□□□ 0.35
PDLIM1-205ENST00000493949 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.25■□□□□ 0.35
PDLIM1-205ENST00000493949 MLECQ14165 292 aa17.24■□□□□ 0.35
PDLIM1-205ENST00000493949 UHRF1BP1Q6BDS2 1440 aa17.23■□□□□ 0.35
PDLIM1-205ENST00000493949 ATP10AO60312 1499 aa17.22■□□□□ 0.35
PDLIM1-205ENST00000493949 P3H3Q8IVL6 736 aa17.21■□□□□ 0.35
PDLIM1-205ENST00000493949 C9orf84Q5VXU9 1444 aa17.21■□□□□ 0.34
PDLIM1-205ENST00000493949 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.2■□□□□ 0.34
PDLIM1-205ENST00000493949 HNRNPUL2Q1KMD3 747 aaKnown RBP17.2■□□□□ 0.34
PDLIM1-205ENST00000493949 CEBPAP49715 358 aaPredicted RBP17.19■□□□□ 0.34
PDLIM1-205ENST00000493949 PLEKHD1A6NEE1 506 aa17.17■□□□□ 0.34
PDLIM1-205ENST00000493949 C3P01024 1663 aa17.16■□□□□ 0.34
PDLIM1-205ENST00000493949 SCAPERQ9BY12 1400 aa17.15■□□□□ 0.34
PDLIM1-205ENST00000493949 PLCH2O75038 1416 aa17.13■□□□□ 0.33
PDLIM1-205ENST00000493949 NCOA1Q15788 1441 aa17.13■□□□□ 0.33
PDLIM1-205ENST00000493949 REREQ9P2R6 1566 aa17.11■□□□□ 0.33
PDLIM1-205ENST00000493949 KDM5CP41229 1560 aa17.08■□□□□ 0.32
PDLIM1-205ENST00000493949 TRAPPC8Q9Y2L5 1435 aa17.08■□□□□ 0.32
PDLIM1-205ENST00000493949 DCAF8L1A6NGE4 600 aa17.08■□□□□ 0.32
PDLIM1-205ENST00000493949 MYO5CQ9NQX4 1742 aa17.07■□□□□ 0.32
PDLIM1-205ENST00000493949 HRCP23327 699 aa17.06■□□□□ 0.32
PDLIM1-205ENST00000493949 ZNF518AQ6AHZ1 1483 aa17.05■□□□□ 0.32
PDLIM1-205ENST00000493949 MED1Q15648 1581 aaPredicted RBP17.05■□□□□ 0.32
PDLIM1-205ENST00000493949 DIP2CQ9Y2E4 1556 aa17.05■□□□□ 0.32
PDLIM1-205ENST00000493949 AGLP35573 1532 aa17.04■□□□□ 0.32
PDLIM1-205ENST00000493949 UBAP1LF5GYI3 381 aa17.03■□□□□ 0.32
PDLIM1-205ENST00000493949 CAMSAP1Q5T5Y3 1602 aa17.02■□□□□ 0.31
PDLIM1-205ENST00000493949 ABCA6Q8N139 1617 aa17■□□□□ 0.31
PDLIM1-205ENST00000493949 EFCAB2Q5VUJ9 269 aa17■□□□□ 0.31
PDLIM1-205ENST00000493949 MROH2AA6NES4 1674 aa16.99■□□□□ 0.31
PDLIM1-205ENST00000493949 CNTLNQ9NXG0 1405 aa16.98■□□□□ 0.31
PDLIM1-205ENST00000493949 CDK13Q14004 1512 aaKnown RBP16.98■□□□□ 0.31
PDLIM1-205ENST00000493949 MLH3Q9UHC1 1453 aa16.98■□□□□ 0.31
PDLIM1-205ENST00000493949 ZNF335Q9H4Z2 1342 aaPredicted RBP16.97■□□□□ 0.31
PDLIM1-205ENST00000493949 NPATQ14207 1427 aa16.97■□□□□ 0.31
PDLIM1-205ENST00000493949 ZNF142P52746 1687 aaPredicted RBP16.96■□□□□ 0.31
PDLIM1-205ENST00000493949 PLA2R1Q13018 1463 aa16.95■□□□□ 0.3
PDLIM1-205ENST00000493949 RANGAP1P46060 587 aaPredicted RBP16.95■□□□□ 0.3
PDLIM1-205ENST00000493949 AFAP1Q8N556 730 aa16.95■□□□□ 0.3
PDLIM1-205ENST00000493949 SUPT6HQ7KZ85 1726 aaKnown RBP16.94■□□□□ 0.3
PDLIM1-205ENST00000493949 ESF1Q9H501 851 aaKnown RBP16.93■□□□□ 0.3
PDLIM1-205ENST00000493949 TCOF1Q13428 1488 aaKnown RBP16.93■□□□□ 0.3
PDLIM1-205ENST00000493949 PKD2Q13563 968 aa16.92■□□□□ 0.3
PDLIM1-205ENST00000493949 PPP4R3CPQ6ZMV5 832 aa16.92■□□□□ 0.3
PDLIM1-205ENST00000493949 HSPA1LP34931 641 aa16.91■□□□□ 0.3
PDLIM1-205ENST00000493949 KIF14Q15058 1648 aa16.91■□□□□ 0.3
PDLIM1-205ENST00000493949 NCKAP5LQ9HCH0 1330 aa16.91■□□□□ 0.3
PDLIM1-205ENST00000493949 CDC42BPBQ9Y5S2 1711 aa16.9■□□□□ 0.3
PDLIM1-205ENST00000493949 ARHGAP5Q13017 1502 aa16.9■□□□□ 0.3
PDLIM1-205ENST00000493949 KIDINS220Q9ULH0 1771 aa16.89■□□□□ 0.3
PDLIM1-205ENST00000493949 CSRNP3Q8WYN3 585 aa16.89■□□□□ 0.29
PDLIM1-205ENST00000493949 MYO3AQ8NEV4 1616 aa16.88■□□□□ 0.29
PDLIM1-205ENST00000493949 HOXD11P31277 338 aaPredicted RBP16.88■□□□□ 0.29
PDLIM1-205ENST00000493949 CEP170BQ9Y4F5 1589 aaPredicted RBP16.86■□□□□ 0.29
PDLIM1-205ENST00000493949 ITSN2Q9NZM3 1697 aa16.86■□□□□ 0.29
PDLIM1-205ENST00000493949 MYT1LQ9UL68 1186 aa16.85■□□□□ 0.29
PDLIM1-205ENST00000493949 ZMYM3Q14202 1370 aa16.85■□□□□ 0.29
PDLIM1-205ENST00000493949 ABCC1P33527 1531 aa16.85■□□□□ 0.29
PDLIM1-205ENST00000493949 CPS1P31327 1500 aa16.84■□□□□ 0.29
PDLIM1-205ENST00000493949 TOM1O60784 492 aa16.83■□□□□ 0.28
PDLIM1-205ENST00000493949 RNF39Q9H2S5 420 aa16.83■□□□□ 0.28
PDLIM1-205ENST00000493949 CDK11AQ9UQ88 783 aaPredicted RBP16.83■□□□□ 0.28
PDLIM1-205ENST00000493949 TROQ12816 1431 aaPredicted RBP16.82■□□□□ 0.28
PDLIM1-205ENST00000493949 CLTCQ00610 1675 aaKnown RBP16.81■□□□□ 0.28
PDLIM1-205ENST00000493949 PREX2Q70Z35 1606 aa16.81■□□□□ 0.28
PDLIM1-205ENST00000493949 POLR1AO95602 1720 aaPredicted RBP16.8■□□□□ 0.28
PDLIM1-205ENST00000493949 PTPRKQ15262 1439 aa16.79■□□□□ 0.28
PDLIM1-205ENST00000493949 ALKQ9UM73 1620 aa16.79■□□□□ 0.28
PDLIM1-205ENST00000493949 PIP4K2BP78356 416 aa16.79■□□□□ 0.28
PDLIM1-205ENST00000493949 CLIP1P30622 1438 aa16.77■□□□□ 0.27
PDLIM1-205ENST00000493949 FMN1Q68DA7 1419 aa16.77■□□□□ 0.27
PDLIM1-205ENST00000493949 DNMT1P26358 1616 aaKnown RBP16.77■□□□□ 0.27
PDLIM1-205ENST00000493949 LRRIQ1Q96JM4 1722 aa16.76■□□□□ 0.27
PDLIM1-205ENST00000493949 SHANK2Q9UPX8 1470 aa16.76■□□□□ 0.27
PDLIM1-205ENST00000493949 EEA1Q15075 1411 aa16.76■□□□□ 0.27
PDLIM1-205ENST00000493949 NEURL4Q96JN8 1562 aa16.76■□□□□ 0.27
PDLIM1-205ENST00000493949 SAMD9LQ8IVG5 1584 aa16.75■□□□□ 0.27
PDLIM1-205ENST00000493949 A2ML1A8K2U0 1454 aa16.74■□□□□ 0.27
PDLIM1-205ENST00000493949 PLXNC1O60486 1568 aa16.74■□□□□ 0.27
PDLIM1-205ENST00000493949 CDC42BPAQ5VT25 1732 aa16.73■□□□□ 0.27
PDLIM1-205ENST00000493949 VWDEQ8N2E2 1590 aa16.72■□□□□ 0.27
PDLIM1-205ENST00000493949 CNKSR2Q8WXI2 1034 aa16.71■□□□□ 0.27
PDLIM1-205ENST00000493949 RGS17Q9UGC6 210 aaPredicted RBP16.69■□□□□ 0.26
PDLIM1-205ENST00000493949 EHMT2Q96KQ7 1210 aa16.67■□□□□ 0.26
PDLIM1-205ENST00000493949 ATP1B4Q9UN42 357 aaPredicted RBP16.67■□□□□ 0.26
PDLIM1-205ENST00000493949 INO80Q9ULG1 1556 aaPredicted RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms