RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 EFCAB5A4FU69 1503 aa17.37■□□□□ 0.37
PDLIM1-205ENST00000493949 MAGI2Q86UL8 1455 aa17.36■□□□□ 0.37
PDLIM1-205ENST00000493949 ZFYVE16Q7Z3T8 1539 aa17.35■□□□□ 0.37
PDLIM1-205ENST00000493949 FAM9AQ8IZU1 332 aaPredicted RBP17.34■□□□□ 0.37
PDLIM1-205ENST00000493949 ARHGEF12Q9NZN5 1544 aa17.34■□□□□ 0.37
PDLIM1-205ENST00000493949 RAPGEF6Q8TEU7 1601 aa17.33■□□□□ 0.37
PDLIM1-205ENST00000493949 IQSEC2Q5JU85 1478 aa17.33■□□□□ 0.37
PDLIM1-205ENST00000493949 ARID3CA6NKF2 412 aa17.33■□□□□ 0.36
PDLIM1-205ENST00000493949 PTPRTO14522 1441 aa17.3■□□□□ 0.36
PDLIM1-205ENST00000493949 LTBP4Q8N2S1 1624 aa17.29■□□□□ 0.36
PDLIM1-205ENST00000493949 CACNB1Q02641 598 aaPredicted RBP17.29■□□□□ 0.36
PDLIM1-205ENST00000493949 SAMD9Q5K651 1589 aa17.28■□□□□ 0.36
PDLIM1-205ENST00000493949 PRXQ9BXM0 1461 aa17.28■□□□□ 0.36
PDLIM1-205ENST00000493949 HECW1Q76N89 1606 aa17.28■□□□□ 0.36
PDLIM1-205ENST00000493949 NUP153P49790 1475 aaKnown RBP17.25■□□□□ 0.35
PDLIM1-205ENST00000493949 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.25■□□□□ 0.35
PDLIM1-205ENST00000493949 MLECQ14165 292 aa17.24■□□□□ 0.35
PDLIM1-205ENST00000493949 UHRF1BP1Q6BDS2 1440 aa17.23■□□□□ 0.35
PDLIM1-205ENST00000493949 ATP10AO60312 1499 aa17.22■□□□□ 0.35
PDLIM1-205ENST00000493949 P3H3Q8IVL6 736 aa17.21■□□□□ 0.35
PDLIM1-205ENST00000493949 C9orf84Q5VXU9 1444 aa17.21■□□□□ 0.34
PDLIM1-205ENST00000493949 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.2■□□□□ 0.34
PDLIM1-205ENST00000493949 HNRNPUL2Q1KMD3 747 aaKnown RBP17.2■□□□□ 0.34
PDLIM1-205ENST00000493949 CEBPAP49715 358 aaPredicted RBP17.19■□□□□ 0.34
PDLIM1-205ENST00000493949 PLEKHD1A6NEE1 506 aa17.17■□□□□ 0.34
PDLIM1-205ENST00000493949 C3P01024 1663 aa17.16■□□□□ 0.34
PDLIM1-205ENST00000493949 SCAPERQ9BY12 1400 aa17.15■□□□□ 0.34
PDLIM1-205ENST00000493949 PLCH2O75038 1416 aa17.13■□□□□ 0.33
PDLIM1-205ENST00000493949 NCOA1Q15788 1441 aa17.13■□□□□ 0.33
PDLIM1-205ENST00000493949 REREQ9P2R6 1566 aa17.11■□□□□ 0.33
PDLIM1-205ENST00000493949 KDM5CP41229 1560 aa17.08■□□□□ 0.32
PDLIM1-205ENST00000493949 TRAPPC8Q9Y2L5 1435 aa17.08■□□□□ 0.32
PDLIM1-205ENST00000493949 DCAF8L1A6NGE4 600 aa17.08■□□□□ 0.32
PDLIM1-205ENST00000493949 MYO5CQ9NQX4 1742 aa17.07■□□□□ 0.32
PDLIM1-205ENST00000493949 HRCP23327 699 aa17.06■□□□□ 0.32
PDLIM1-205ENST00000493949 ZNF518AQ6AHZ1 1483 aa17.05■□□□□ 0.32
PDLIM1-205ENST00000493949 MED1Q15648 1581 aaPredicted RBP17.05■□□□□ 0.32
PDLIM1-205ENST00000493949 DIP2CQ9Y2E4 1556 aa17.05■□□□□ 0.32
PDLIM1-205ENST00000493949 AGLP35573 1532 aa17.04■□□□□ 0.32
PDLIM1-205ENST00000493949 UBAP1LF5GYI3 381 aa17.03■□□□□ 0.32
PDLIM1-205ENST00000493949 CAMSAP1Q5T5Y3 1602 aa17.02■□□□□ 0.31
PDLIM1-205ENST00000493949 ABCA6Q8N139 1617 aa17■□□□□ 0.31
PDLIM1-205ENST00000493949 EFCAB2Q5VUJ9 269 aa17■□□□□ 0.31
PDLIM1-205ENST00000493949 MROH2AA6NES4 1674 aa16.99■□□□□ 0.31
PDLIM1-205ENST00000493949 CNTLNQ9NXG0 1405 aa16.98■□□□□ 0.31
PDLIM1-205ENST00000493949 CDK13Q14004 1512 aaKnown RBP16.98■□□□□ 0.31
PDLIM1-205ENST00000493949 MLH3Q9UHC1 1453 aa16.98■□□□□ 0.31
PDLIM1-205ENST00000493949 ZNF335Q9H4Z2 1342 aaPredicted RBP16.97■□□□□ 0.31
PDLIM1-205ENST00000493949 NPATQ14207 1427 aa16.97■□□□□ 0.31
PDLIM1-205ENST00000493949 ZNF142P52746 1687 aaPredicted RBP16.96■□□□□ 0.31
PDLIM1-205ENST00000493949 PLA2R1Q13018 1463 aa16.95■□□□□ 0.3
PDLIM1-205ENST00000493949 RANGAP1P46060 587 aaPredicted RBP16.95■□□□□ 0.3
PDLIM1-205ENST00000493949 AFAP1Q8N556 730 aa16.95■□□□□ 0.3
PDLIM1-205ENST00000493949 SUPT6HQ7KZ85 1726 aaKnown RBP16.94■□□□□ 0.3
PDLIM1-205ENST00000493949 ESF1Q9H501 851 aaKnown RBP16.93■□□□□ 0.3
PDLIM1-205ENST00000493949 TCOF1Q13428 1488 aaKnown RBP16.93■□□□□ 0.3
PDLIM1-205ENST00000493949 PKD2Q13563 968 aa16.92■□□□□ 0.3
PDLIM1-205ENST00000493949 PPP4R3CPQ6ZMV5 832 aa16.92■□□□□ 0.3
PDLIM1-205ENST00000493949 HSPA1LP34931 641 aa16.91■□□□□ 0.3
PDLIM1-205ENST00000493949 KIF14Q15058 1648 aa16.91■□□□□ 0.3
PDLIM1-205ENST00000493949 NCKAP5LQ9HCH0 1330 aa16.91■□□□□ 0.3
PDLIM1-205ENST00000493949 CDC42BPBQ9Y5S2 1711 aa16.9■□□□□ 0.3
PDLIM1-205ENST00000493949 ARHGAP5Q13017 1502 aa16.9■□□□□ 0.3
PDLIM1-205ENST00000493949 KIDINS220Q9ULH0 1771 aa16.89■□□□□ 0.3
PDLIM1-205ENST00000493949 CSRNP3Q8WYN3 585 aa16.89■□□□□ 0.29
PDLIM1-205ENST00000493949 MYO3AQ8NEV4 1616 aa16.88■□□□□ 0.29
PDLIM1-205ENST00000493949 HOXD11P31277 338 aaPredicted RBP16.88■□□□□ 0.29
PDLIM1-205ENST00000493949 CEP170BQ9Y4F5 1589 aaPredicted RBP16.86■□□□□ 0.29
PDLIM1-205ENST00000493949 ITSN2Q9NZM3 1697 aa16.86■□□□□ 0.29
PDLIM1-205ENST00000493949 MYT1LQ9UL68 1186 aa16.85■□□□□ 0.29
PDLIM1-205ENST00000493949 ZMYM3Q14202 1370 aa16.85■□□□□ 0.29
PDLIM1-205ENST00000493949 ABCC1P33527 1531 aa16.85■□□□□ 0.29
PDLIM1-205ENST00000493949 CPS1P31327 1500 aa16.84■□□□□ 0.29
PDLIM1-205ENST00000493949 TOM1O60784 492 aa16.83■□□□□ 0.28
PDLIM1-205ENST00000493949 RNF39Q9H2S5 420 aa16.83■□□□□ 0.28
PDLIM1-205ENST00000493949 CDK11AQ9UQ88 783 aaPredicted RBP16.83■□□□□ 0.28
PDLIM1-205ENST00000493949 TROQ12816 1431 aaPredicted RBP16.82■□□□□ 0.28
PDLIM1-205ENST00000493949 CLTCQ00610 1675 aaKnown RBP16.81■□□□□ 0.28
PDLIM1-205ENST00000493949 PREX2Q70Z35 1606 aa16.81■□□□□ 0.28
PDLIM1-205ENST00000493949 POLR1AO95602 1720 aaPredicted RBP16.8■□□□□ 0.28
PDLIM1-205ENST00000493949 PTPRKQ15262 1439 aa16.79■□□□□ 0.28
PDLIM1-205ENST00000493949 ALKQ9UM73 1620 aa16.79■□□□□ 0.28
PDLIM1-205ENST00000493949 PIP4K2BP78356 416 aa16.79■□□□□ 0.28
PDLIM1-205ENST00000493949 CLIP1P30622 1438 aa16.77■□□□□ 0.27
PDLIM1-205ENST00000493949 FMN1Q68DA7 1419 aa16.77■□□□□ 0.27
PDLIM1-205ENST00000493949 DNMT1P26358 1616 aaKnown RBP16.77■□□□□ 0.27
PDLIM1-205ENST00000493949 LRRIQ1Q96JM4 1722 aa16.76■□□□□ 0.27
PDLIM1-205ENST00000493949 SHANK2Q9UPX8 1470 aa16.76■□□□□ 0.27
PDLIM1-205ENST00000493949 EEA1Q15075 1411 aa16.76■□□□□ 0.27
PDLIM1-205ENST00000493949 NEURL4Q96JN8 1562 aa16.76■□□□□ 0.27
PDLIM1-205ENST00000493949 SAMD9LQ8IVG5 1584 aa16.75■□□□□ 0.27
PDLIM1-205ENST00000493949 A2ML1A8K2U0 1454 aa16.74■□□□□ 0.27
PDLIM1-205ENST00000493949 PLXNC1O60486 1568 aa16.74■□□□□ 0.27
PDLIM1-205ENST00000493949 CDC42BPAQ5VT25 1732 aa16.73■□□□□ 0.27
PDLIM1-205ENST00000493949 VWDEQ8N2E2 1590 aa16.72■□□□□ 0.27
PDLIM1-205ENST00000493949 CNKSR2Q8WXI2 1034 aa16.71■□□□□ 0.27
PDLIM1-205ENST00000493949 RGS17Q9UGC6 210 aaPredicted RBP16.69■□□□□ 0.26
PDLIM1-205ENST00000493949 EHMT2Q96KQ7 1210 aa16.67■□□□□ 0.26
PDLIM1-205ENST00000493949 ATP1B4Q9UN42 357 aaPredicted RBP16.67■□□□□ 0.26
PDLIM1-205ENST00000493949 INO80Q9ULG1 1556 aaPredicted RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms