RNA–Protein interactions for RNA: ENST00000492606.1

UBR4-215, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-215ENST00000492606 SLC34A2O95436 690 aa8.21□□□□□ -1.1
UBR4-215ENST00000492606 DSG3P32926 999 aa8.21□□□□□ -1.1
UBR4-215ENST00000492606 FBXO3Q9UK99 471 aa8.21□□□□□ -1.1
UBR4-215ENST00000492606 MAGI3Q5TCQ9 1506 aa8.19□□□□□ -1.1
UBR4-215ENST00000492606 VASPP50552 380 aaPredicted RBP8.18□□□□□ -1.1
UBR4-215ENST00000492606 ARAP3Q8WWN8 1544 aa8.18□□□□□ -1.1
UBR4-215ENST00000492606 ALKQ9UM73 1620 aa8.18□□□□□ -1.1
UBR4-215ENST00000492606 CEBPAP49715 358 aaPredicted RBP8.17□□□□□ -1.1
UBR4-215ENST00000492606 IFNLR1Q8IU57 520 aaPredicted RBP8.17□□□□□ -1.1
UBR4-215ENST00000492606 TTC37Q6PGP7 1564 aa8.17□□□□□ -1.1
UBR4-215ENST00000492606 TOM1O60784 492 aa8.16□□□□□ -1.1
UBR4-215ENST00000492606 CD109Q6YHK3 1445 aa8.16□□□□□ -1.1
UBR4-215ENST00000492606 SIGLEC1Q9BZZ2 1709 aa8.15□□□□□ -1.1
UBR4-215ENST00000492606 RUSC2Q8N2Y8 1516 aa8.15□□□□□ -1.1
UBR4-215ENST00000492606 TTBK1Q5TCY1 1321 aaPredicted RBP8.15□□□□□ -1.1
UBR4-215ENST00000492606 TOP2AP11388 1531 aaKnown RBP8.14□□□□□ -1.11
UBR4-215ENST00000492606 RAPGEF3O95398 923 aa8.14□□□□□ -1.11
UBR4-215ENST00000492606 FER1L4A9Z1Z3 1794 aa8.14□□□□□ -1.11
UBR4-215ENST00000492606 FHAD1B1AJZ9 1412 aa8.13□□□□□ -1.11
UBR4-215ENST00000492606 PTPRGP23470 1445 aa8.13□□□□□ -1.11
UBR4-215ENST00000492606 NCOA1Q15788 1441 aa8.13□□□□□ -1.11
UBR4-215ENST00000492606 UHRF1BP1Q6BDS2 1440 aa8.13□□□□□ -1.11
UBR4-215ENST00000492606 ZBTB12Q9Y330 459 aaPredicted RBP8.13□□□□□ -1.11
UBR4-215ENST00000492606 CCDC88BA6NC98 1476 aa8.13□□□□□ -1.11
UBR4-215ENST00000492606 SENP3-EIF4A1A0A087X0R7 540 aa8.12□□□□□ -1.11
UBR4-215ENST00000492606 CUX1P39880 1505 aa8.11□□□□□ -1.11
UBR4-215ENST00000492606 SETD1BQ9UPS6 1966 aaKnown RBP8.11□□□□□ -1.11
UBR4-215ENST00000492606 ABCA10Q8WWZ4 1543 aa8.1□□□□□ -1.11
UBR4-215ENST00000492606 KIAA0556O60303 1618 aa8.1□□□□□ -1.11
UBR4-215ENST00000492606 UHRF1BP1LA0JNW5 1464 aa8.09□□□□□ -1.11
UBR4-215ENST00000492606 YY1P25490 414 aa8.09□□□□□ -1.11
UBR4-215ENST00000492606 MLECQ14165 292 aa8.09□□□□□ -1.11
UBR4-215ENST00000492606 TRIM52Q96A61 297 aa8.09□□□□□ -1.11
UBR4-215ENST00000492606 FRMPD1Q5SYB0 1578 aa8.09□□□□□ -1.11
UBR4-215ENST00000492606 KDM5BQ9UGL1 1544 aa8.08□□□□□ -1.12
UBR4-215ENST00000492606 ZCCHC11Q5TAX3 1644 aaKnown RBP8.08□□□□□ -1.12
UBR4-215ENST00000492606 ZRANB1Q9UGI0 708 aa8.08□□□□□ -1.12
UBR4-215ENST00000492606 SSUH2Q9Y2M2 353 aa8.08□□□□□ -1.12
UBR4-215ENST00000492606 NCKAP5LQ9HCH0 1330 aa8.06□□□□□ -1.12
UBR4-215ENST00000492606 CEP350Q5VT06 3117 aa8.06□□□□□ -1.12
UBR4-215ENST00000492606 PCDH10Q9P2E7 1040 aa8.06□□□□□ -1.12
UBR4-215ENST00000492606 ARHGEF40Q8TER5 1519 aa8.06□□□□□ -1.12
UBR4-215ENST00000492606 WDR7Q9Y4E6 1490 aa8.06□□□□□ -1.12
UBR4-215ENST00000492606 PKD2Q13563 968 aa8.05□□□□□ -1.12
UBR4-215ENST00000492606 POGZQ7Z3K3 1410 aa8.04□□□□□ -1.12
UBR4-215ENST00000492606 ZNF692Q9BU19 519 aaPredicted RBP8.04□□□□□ -1.12
UBR4-215ENST00000492606 KCNH8Q96L42 1107 aa8.03□□□□□ -1.12
UBR4-215ENST00000492606 CAMSAP1Q5T5Y3 1602 aa8.03□□□□□ -1.12
UBR4-215ENST00000492606 UACAQ9BZF9 1416 aa8.03□□□□□ -1.12
UBR4-215ENST00000492606 FANCAO15360 1455 aa8.02□□□□□ -1.13
UBR4-215ENST00000492606 SPDYE2BA6NHP3 402 aa8.02□□□□□ -1.13
UBR4-215ENST00000492606 SPDYE6P0CI01 402 aa8.02□□□□□ -1.13
UBR4-215ENST00000492606 SPDYE2Q495Y8 402 aa8.02□□□□□ -1.13
UBR4-215ENST00000492606 LRP5O75197 1615 aa8.01□□□□□ -1.13
UBR4-215ENST00000492606 ARHGEF12Q9NZN5 1544 aa8.01□□□□□ -1.13
UBR4-215ENST00000492606 PTPRKQ15262 1439 aa8.01□□□□□ -1.13
UBR4-215ENST00000492606 TNIKQ9UKE5 1360 aa8□□□□□ -1.13
UBR4-215ENST00000492606 LRRC7Q96NW7 1537 aa7.99□□□□□ -1.13
UBR4-215ENST00000492606 CPS1P31327 1500 aa7.96□□□□□ -1.14
UBR4-215ENST00000492606 RAPGEF6Q8TEU7 1601 aa7.96□□□□□ -1.14
UBR4-215ENST00000492606 ERICH3Q5RHP9 1530 aa7.95□□□□□ -1.14
UBR4-215ENST00000492606 PHLDB1Q86UU1 1377 aa7.95□□□□□ -1.14
UBR4-215ENST00000492606 AKNAQ7Z591 1439 aa7.95□□□□□ -1.14
UBR4-215ENST00000492606 STAG3Q9UJ98 1225 aa7.94□□□□□ -1.14
UBR4-215ENST00000492606 C3P01024 1663 aa7.94□□□□□ -1.14
UBR4-215ENST00000492606 C1QTNF8P60827 252 aa7.93□□□□□ -1.14
UBR4-215ENST00000492606 SHANK2Q9UPX8 1470 aa7.93□□□□□ -1.14
UBR4-215ENST00000492606 RICTORQ6R327 1708 aa7.92□□□□□ -1.14
UBR4-215ENST00000492606 PLCB2Q00722 1185 aa7.91□□□□□ -1.14
UBR4-215ENST00000492606 CACNB1Q02641 598 aaPredicted RBP7.91□□□□□ -1.14
UBR4-215ENST00000492606 SPOCK2Q92563 424 aa7.91□□□□□ -1.14
UBR4-215ENST00000492606 TCOF1Q13428 1488 aaKnown RBP7.91□□□□□ -1.14
UBR4-215ENST00000492606 CDK12Q9NYV4 1490 aaPredicted RBP7.91□□□□□ -1.14
UBR4-215ENST00000492606 TRAPPC8Q9Y2L5 1435 aa7.9□□□□□ -1.14
UBR4-215ENST00000492606 RXRBP28702 533 aa7.9□□□□□ -1.14
UBR4-215ENST00000492606 NEO1Q92859 1461 aa7.89□□□□□ -1.15
UBR4-215ENST00000492606 ZFYVE16Q7Z3T8 1539 aa7.88□□□□□ -1.15
UBR4-215ENST00000492606 RAPGEF2Q9Y4G8 1499 aa7.87□□□□□ -1.15
UBR4-215ENST00000492606 CARMIL2Q6F5E8 1435 aa7.87□□□□□ -1.15
UBR4-215ENST00000492606 RGS12O14924 1447 aa7.86□□□□□ -1.15
UBR4-215ENST00000492606 ZNF772Q68DY9 489 aaPredicted RBP7.86□□□□□ -1.15
UBR4-215ENST00000492606 KLHL34Q8N239 644 aa7.86□□□□□ -1.15
UBR4-215ENST00000492606 ZNF784Q8NCA9 323 aaPredicted RBP7.86□□□□□ -1.15
UBR4-215ENST00000492606 PLA2R1Q13018 1463 aa7.86□□□□□ -1.15
UBR4-215ENST00000492606 FHOD3Q2V2M9 1422 aa7.86□□□□□ -1.15
UBR4-215ENST00000492606 VWDEQ8N2E2 1590 aa7.85□□□□□ -1.15
UBR4-215ENST00000492606 NUTM2BA6NNL0 878 aaPredicted RBP7.85□□□□□ -1.15
UBR4-215ENST00000492606 NUTM2EB1AL46 878 aaPredicted RBP7.85□□□□□ -1.15
UBR4-215ENST00000492606 NUTM2DQ5VT03 806 aaPredicted RBP7.85□□□□□ -1.15
UBR4-215ENST00000492606 NUTM2AQ8IVF1 878 aaPredicted RBP7.85□□□□□ -1.15
UBR4-215ENST00000492606 LRP6O75581 1613 aa7.85□□□□□ -1.15
UBR4-215ENST00000492606 EP400Q96L91 3159 aa7.84□□□□□ -1.15
UBR4-215ENST00000492606 ZMYM4Q5VZL5 1548 aa7.84□□□□□ -1.15
UBR4-215ENST00000492606 DENND4BO75064 1496 aaPredicted RBP7.84□□□□□ -1.15
UBR4-215ENST00000492606 MIER1Q8N108 512 aa7.84□□□□□ -1.15
UBR4-215ENST00000492606 PLCD3Q8N3E9 789 aa7.84□□□□□ -1.15
UBR4-215ENST00000492606 ABCA9Q8IUA7 1624 aa7.84□□□□□ -1.15
UBR4-215ENST00000492606 RNF17Q9BXT8 1623 aaKnown RBP7.84□□□□□ -1.15
UBR4-215ENST00000492606 EFCAB5A4FU69 1503 aa7.83□□□□□ -1.16
UBR4-215ENST00000492606 STRCP1A6NGW2 1772 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms