RNA–Protein interactions for RNA: ENST00000489414.5

EXOSC3-206, Transcript of exosome component 3, humanhuman

TSL 4

Gene EXOSC3, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3-206ENST00000489414 RICTORQ6R327 1708 aa14.37□□□□□ -0.11
EXOSC3-206ENST00000489414 ABCA9Q8IUA7 1624 aa14.35□□□□□ -0.11
EXOSC3-206ENST00000489414 UPF1Q92900 1129 aaKnown RBP eCLIP14.35□□□□□ -0.11
EXOSC3-206ENST00000489414 IQGAP2Q13576 1575 aa14.34□□□□□ -0.11
EXOSC3-206ENST00000489414 IFFO2Q5TF58 517 aa14.34□□□□□ -0.11
EXOSC3-206ENST00000489414 ALKQ9UM73 1620 aa14.32□□□□□ -0.12
EXOSC3-206ENST00000489414 ZMYM4Q5VZL5 1548 aa14.31□□□□□ -0.12
EXOSC3-206ENST00000489414 ZFYVE16Q7Z3T8 1539 aa14.31□□□□□ -0.12
EXOSC3-206ENST00000489414 FHOD3Q2V2M9 1422 aa14.3□□□□□ -0.12
EXOSC3-206ENST00000489414 EFCAB5A4FU69 1503 aa14.3□□□□□ -0.12
EXOSC3-206ENST00000489414 CAMSAP1Q5T5Y3 1602 aa14.3□□□□□ -0.12
EXOSC3-206ENST00000489414 DENND4BO75064 1496 aaPredicted RBP14.27□□□□□ -0.12
EXOSC3-206ENST00000489414 C3P01024 1663 aa14.25□□□□□ -0.13
EXOSC3-206ENST00000489414 MAGI2Q86UL8 1455 aa14.23□□□□□ -0.13
EXOSC3-206ENST00000489414 PTPRKQ15262 1439 aa14.23□□□□□ -0.13
EXOSC3-206ENST00000489414 ABCA8O94911 1581 aa14.22□□□□□ -0.13
EXOSC3-206ENST00000489414 NCKAP5LQ9HCH0 1330 aa14.22□□□□□ -0.13
EXOSC3-206ENST00000489414 CPS1P31327 1500 aa14.22□□□□□ -0.13
EXOSC3-206ENST00000489414 IGF1RP08069 1367 aa14.22□□□□□ -0.13
EXOSC3-206ENST00000489414 UGGT2Q9NYU1 1516 aa14.21□□□□□ -0.13
EXOSC3-206ENST00000489414 TRAPPC8Q9Y2L5 1435 aa14.21□□□□□ -0.13
EXOSC3-206ENST00000489414 PLA2R1Q13018 1463 aa14.17□□□□□ -0.14
EXOSC3-206ENST00000489414 TCOF1Q13428 1488 aaKnown RBP14.17□□□□□ -0.14
EXOSC3-206ENST00000489414 PKD2Q13563 968 aa14.16□□□□□ -0.14
EXOSC3-206ENST00000489414 HECW1Q76N89 1606 aa14.15□□□□□ -0.14
EXOSC3-206ENST00000489414 C9orf84Q5VXU9 1444 aa14.15□□□□□ -0.14
EXOSC3-206ENST00000489414 ATP10AO60312 1499 aa14.13□□□□□ -0.15
EXOSC3-206ENST00000489414 RAPGEF2Q9Y4G8 1499 aa14.12□□□□□ -0.15
EXOSC3-206ENST00000489414 SHANK2Q9UPX8 1470 aa14.1□□□□□ -0.15
EXOSC3-206ENST00000489414 CFAP74Q9C0B2 1584 aa14.09□□□□□ -0.15
EXOSC3-206ENST00000489414 ZNF142P52746 1687 aaPredicted RBP14.07□□□□□ -0.16
EXOSC3-206ENST00000489414 MAPK8IP2Q13387 824 aaPredicted RBP14.07□□□□□ -0.16
EXOSC3-206ENST00000489414 CARMIL1Q5VZK9 1371 aa14.07□□□□□ -0.16
EXOSC3-206ENST00000489414 ATP10BO94823 1461 aa14.06□□□□□ -0.16
EXOSC3-206ENST00000489414 SUPT6HQ7KZ85 1726 aaKnown RBP14.06□□□□□ -0.16
EXOSC3-206ENST00000489414 NPATQ14207 1427 aa14.05□□□□□ -0.16
EXOSC3-206ENST00000489414 SETBP1Q9Y6X0 1596 aa14.05□□□□□ -0.16
EXOSC3-206ENST00000489414 LRRC7Q96NW7 1537 aa14.03□□□□□ -0.16
EXOSC3-206ENST00000489414 RNF17Q9BXT8 1623 aaKnown RBP14.03□□□□□ -0.16
EXOSC3-206ENST00000489414 KIF27Q86VH2 1401 aa14.01□□□□□ -0.17
EXOSC3-206ENST00000489414 VWDEQ8N2E2 1590 aa14□□□□□ -0.17
EXOSC3-206ENST00000489414 RBM33Q96EV2 1170 aaKnown RBP14□□□□□ -0.17
EXOSC3-206ENST00000489414 MYO3AQ8NEV4 1616 aa14□□□□□ -0.17
EXOSC3-206ENST00000489414 TRIM52Q96A61 297 aa13.99□□□□□ -0.17
EXOSC3-206ENST00000489414 CEP170BQ9Y4F5 1589 aaPredicted RBP13.99□□□□□ -0.17
EXOSC3-206ENST00000489414 ARID3CA6NKF2 412 aa13.98□□□□□ -0.17
EXOSC3-206ENST00000489414 AGLP35573 1532 aa13.98□□□□□ -0.17
EXOSC3-206ENST00000489414 NEURL4Q96JN8 1562 aa13.96□□□□□ -0.17
EXOSC3-206ENST00000489414 ZRANB1Q9UGI0 708 aa13.96□□□□□ -0.17
EXOSC3-206ENST00000489414 CNTLNQ9NXG0 1405 aa13.96□□□□□ -0.18
EXOSC3-206ENST00000489414 REREQ9P2R6 1566 aa13.96□□□□□ -0.18
EXOSC3-206ENST00000489414 POLR1AO95602 1720 aaPredicted RBP13.95□□□□□ -0.18
EXOSC3-206ENST00000489414 CDK12Q9NYV4 1490 aaPredicted RBP13.93□□□□□ -0.18
EXOSC3-206ENST00000489414 MROH2AA6NES4 1674 aa13.93□□□□□ -0.18
EXOSC3-206ENST00000489414 ESF1Q9H501 851 aaKnown RBP13.92□□□□□ -0.18
EXOSC3-206ENST00000489414 GOLGA3Q08378 1498 aa13.92□□□□□ -0.18
EXOSC3-206ENST00000489414 SCAPERQ9BY12 1400 aa13.91□□□□□ -0.18
EXOSC3-206ENST00000489414 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.9□□□□□ -0.18
EXOSC3-206ENST00000489414 SYNMO15061 1565 aa13.9□□□□□ -0.18
EXOSC3-206ENST00000489414 STRCP1A6NGW2 1772 aa13.89□□□□□ -0.19
EXOSC3-206ENST00000489414 DIP2CQ9Y2E4 1556 aa13.89□□□□□ -0.19
EXOSC3-206ENST00000489414 LRP5O75197 1615 aa13.89□□□□□ -0.19
EXOSC3-206ENST00000489414 FAM135BQ49AJ0 1406 aa13.87□□□□□ -0.19
EXOSC3-206ENST00000489414 ZNF772Q68DY9 489 aaPredicted RBP13.86□□□□□ -0.19
EXOSC3-206ENST00000489414 DNMT1P26358 1616 aaKnown RBP13.85□□□□□ -0.19
EXOSC3-206ENST00000489414 RAPGEF6Q8TEU7 1601 aa13.85□□□□□ -0.19
EXOSC3-206ENST00000489414 ZMYM3Q14202 1370 aa13.84□□□□□ -0.19
EXOSC3-206ENST00000489414 KDM5CP41229 1560 aa13.83□□□□□ -0.19
EXOSC3-206ENST00000489414 RXRBP28702 533 aa13.83□□□□□ -0.2
EXOSC3-206ENST00000489414 ABCA6Q8N139 1617 aa13.82□□□□□ -0.2
EXOSC3-206ENST00000489414 CDK13Q14004 1512 aaKnown RBP13.81□□□□□ -0.2
EXOSC3-206ENST00000489414 A2ML1A8K2U0 1454 aa13.8□□□□□ -0.2
EXOSC3-206ENST00000489414 ZNF518AQ6AHZ1 1483 aa13.8□□□□□ -0.2
EXOSC3-206ENST00000489414 EP400Q96L91 3159 aa13.8□□□□□ -0.2
EXOSC3-206ENST00000489414 LRP6O75581 1613 aa13.79□□□□□ -0.2
EXOSC3-206ENST00000489414 CTTNBP2Q8WZ74 1663 aa13.79□□□□□ -0.2
EXOSC3-206ENST00000489414 ROBO1Q9Y6N7 1651 aa13.78□□□□□ -0.2
EXOSC3-206ENST00000489414 RGS12O14924 1447 aa13.77□□□□□ -0.21
EXOSC3-206ENST00000489414 MED14O60244 1454 aa13.77□□□□□ -0.21
EXOSC3-206ENST00000489414 YY1P25490 414 aa13.77□□□□□ -0.21
EXOSC3-206ENST00000489414 XIRP1Q702N8 1843 aaKnown RBP13.77□□□□□ -0.21
EXOSC3-206ENST00000489414 JCADQ9P266 1359 aa13.76□□□□□ -0.21
EXOSC3-206ENST00000489414 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.75□□□□□ -0.21
EXOSC3-206ENST00000489414 HNRNPUL2Q1KMD3 747 aaKnown RBP13.75□□□□□ -0.21
EXOSC3-206ENST00000489414 PLCH2O75038 1416 aa13.74□□□□□ -0.21
EXOSC3-206ENST00000489414 DEPDC5O75140 1603 aa13.74□□□□□ -0.21
EXOSC3-206ENST00000489414 NPHP4O75161 1426 aaPredicted RBP13.73□□□□□ -0.21
EXOSC3-206ENST00000489414 IQGAP1P46940 1657 aa13.73□□□□□ -0.21
EXOSC3-206ENST00000489414 CLTCQ00610 1675 aaKnown RBP13.72□□□□□ -0.21
EXOSC3-206ENST00000489414 NUP153P49790 1475 aaKnown RBP13.72□□□□□ -0.21
EXOSC3-206ENST00000489414 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.71□□□□□ -0.21
EXOSC3-206ENST00000489414 AFAP1Q8N556 730 aa13.71□□□□□ -0.21
EXOSC3-206ENST00000489414 MLH3Q9UHC1 1453 aa13.71□□□□□ -0.21
EXOSC3-206ENST00000489414 PHLPP1O60346 1717 aa13.7□□□□□ -0.22
EXOSC3-206ENST00000489414 SENP3-EIF4A1A0A087X0R7 540 aa13.7□□□□□ -0.22
EXOSC3-206ENST00000489414 ATAD2Q6PL18 1390 aa13.7□□□□□ -0.22
EXOSC3-206ENST00000489414 ANKLE2Q86XL3 938 aa13.69□□□□□ -0.22
EXOSC3-206ENST00000489414 FAM9AQ8IZU1 332 aaPredicted RBP13.69□□□□□ -0.22
EXOSC3-206ENST00000489414 PLEKHD1A6NEE1 506 aa13.68□□□□□ -0.22
EXOSC3-206ENST00000489414 NUTM2BA6NNL0 878 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms