RNA–Protein interactions for RNA: ENST00000488809.2

PTCH1-211, Transcript of patched 1, humanhuman

TSL 3

Gene PTCH1, Length 301 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-211ENST00000488809 HSPA2P54652 639 aa10.91□□□□□ -0.66
PTCH1-211ENST00000488809 C9orf84Q5VXU9 1444 aa10.91□□□□□ -0.66
PTCH1-211ENST00000488809 MLECQ14165 292 aa10.9□□□□□ -0.66
PTCH1-211ENST00000488809 CERKQ8TCT0 537 aa10.9□□□□□ -0.66
PTCH1-211ENST00000488809 PLCH2O75038 1416 aa10.9□□□□□ -0.66
PTCH1-211ENST00000488809 SCAPERQ9BY12 1400 aa10.9□□□□□ -0.66
PTCH1-211ENST00000488809 ARHGEF12Q9NZN5 1544 aa10.89□□□□□ -0.67
PTCH1-211ENST00000488809 ATP10AO60312 1499 aa10.89□□□□□ -0.67
PTCH1-211ENST00000488809 CDK13Q14004 1512 aaKnown RBP10.89□□□□□ -0.67
PTCH1-211ENST00000488809 KIF14Q15058 1648 aa10.88□□□□□ -0.67
PTCH1-211ENST00000488809 CDK11AQ9UQ88 783 aaPredicted RBP10.88□□□□□ -0.67
PTCH1-211ENST00000488809 DMRT2Q9Y5R5 561 aa10.88□□□□□ -0.67
PTCH1-211ENST00000488809 ZNF518AQ6AHZ1 1483 aa10.87□□□□□ -0.67
PTCH1-211ENST00000488809 FMN1Q68DA7 1419 aa10.87□□□□□ -0.67
PTCH1-211ENST00000488809 EFCAB2Q5VUJ9 269 aa10.86□□□□□ -0.67
PTCH1-211ENST00000488809 STRCQ7RTU9 1775 aa10.85□□□□□ -0.67
PTCH1-211ENST00000488809 UHRF1BP1Q6BDS2 1440 aa10.85□□□□□ -0.67
PTCH1-211ENST00000488809 CLIP1P30622 1438 aa10.84□□□□□ -0.67
PTCH1-211ENST00000488809 ARHGAP5Q13017 1502 aa10.84□□□□□ -0.67
PTCH1-211ENST00000488809 KDM5CP41229 1560 aa10.84□□□□□ -0.67
PTCH1-211ENST00000488809 REREQ9P2R6 1566 aa10.84□□□□□ -0.67
PTCH1-211ENST00000488809 MYT1LQ9UL68 1186 aa10.83□□□□□ -0.68
PTCH1-211ENST00000488809 ATP1B4Q9UN42 357 aaPredicted RBP10.83□□□□□ -0.68
PTCH1-211ENST00000488809 C3P01024 1663 aa10.82□□□□□ -0.68
PTCH1-211ENST00000488809 DIP2CQ9Y2E4 1556 aa10.82□□□□□ -0.68
PTCH1-211ENST00000488809 CDC42BPBQ9Y5S2 1711 aa10.81□□□□□ -0.68
PTCH1-211ENST00000488809 ESF1Q9H501 851 aaKnown RBP10.81□□□□□ -0.68
PTCH1-211ENST00000488809 TROQ12816 1431 aaPredicted RBP10.81□□□□□ -0.68
PTCH1-211ENST00000488809 DISP3Q9P2K9 1392 aa10.8□□□□□ -0.68
PTCH1-211ENST00000488809 PREX2Q70Z35 1606 aa10.8□□□□□ -0.68
PTCH1-211ENST00000488809 ABCA6Q8N139 1617 aa10.8□□□□□ -0.68
PTCH1-211ENST00000488809 ITSN2Q9NZM3 1697 aa10.79□□□□□ -0.68
PTCH1-211ENST00000488809 LRRIQ1Q96JM4 1722 aa10.79□□□□□ -0.68
PTCH1-211ENST00000488809 UBTFP17480 764 aaKnown RBP10.79□□□□□ -0.68
PTCH1-211ENST00000488809 SPATA31D1Q6ZQQ2 1576 aa10.78□□□□□ -0.68
PTCH1-211ENST00000488809 PTPRTO14522 1441 aa10.78□□□□□ -0.68
PTCH1-211ENST00000488809 CEBPAP49715 358 aaPredicted RBP10.78□□□□□ -0.68
PTCH1-211ENST00000488809 MLH3Q9UHC1 1453 aa10.78□□□□□ -0.68
PTCH1-211ENST00000488809 AGLP35573 1532 aa10.78□□□□□ -0.68
PTCH1-211ENST00000488809 CNTLNQ9NXG0 1405 aa10.77□□□□□ -0.68
PTCH1-211ENST00000488809 MROH2AA6NES4 1674 aa10.77□□□□□ -0.69
PTCH1-211ENST00000488809 IQSEC2Q5JU85 1478 aa10.77□□□□□ -0.69
PTCH1-211ENST00000488809 ARHGAP35Q9NRY4 1499 aa10.77□□□□□ -0.69
PTCH1-211ENST00000488809 SUPT6HQ7KZ85 1726 aaKnown RBP10.77□□□□□ -0.69
PTCH1-211ENST00000488809 ABCC1P33527 1531 aa10.77□□□□□ -0.69
PTCH1-211ENST00000488809 AFAP1Q8N556 730 aa10.76□□□□□ -0.69
PTCH1-211ENST00000488809 CDC42BPAQ5VT25 1732 aa10.75□□□□□ -0.69
PTCH1-211ENST00000488809 CCDC18Q5T9S5 1454 aa10.75□□□□□ -0.69
PTCH1-211ENST00000488809 SOCS7O14512 581 aa10.75□□□□□ -0.69
PTCH1-211ENST00000488809 KIDINS220Q9ULH0 1771 aa10.75□□□□□ -0.69
PTCH1-211ENST00000488809 TRAPPC8Q9Y2L5 1435 aa10.75□□□□□ -0.69
PTCH1-211ENST00000488809 NCOA1Q15788 1441 aa10.72□□□□□ -0.69
PTCH1-211ENST00000488809 NPATQ14207 1427 aa10.71□□□□□ -0.69
PTCH1-211ENST00000488809 CAMSAP1Q5T5Y3 1602 aa10.71□□□□□ -0.69
PTCH1-211ENST00000488809 LTBP4Q8N2S1 1624 aa10.71□□□□□ -0.69
PTCH1-211ENST00000488809 ZNF142P52746 1687 aaPredicted RBP10.7□□□□□ -0.7
PTCH1-211ENST00000488809 ILDR2Q71H61 639 aa10.7□□□□□ -0.7
PTCH1-211ENST00000488809 EHMT2Q96KQ7 1210 aa10.7□□□□□ -0.7
PTCH1-211ENST00000488809 CLTCQ00610 1675 aaKnown RBP10.69□□□□□ -0.7
PTCH1-211ENST00000488809 MYO3AQ8NEV4 1616 aa10.69□□□□□ -0.7
PTCH1-211ENST00000488809 SAMD9LQ8IVG5 1584 aa10.69□□□□□ -0.7
PTCH1-211ENST00000488809 CASKIN1Q8WXD9 1431 aa10.68□□□□□ -0.7
PTCH1-211ENST00000488809 SYCP2Q9BX26 1530 aa10.67□□□□□ -0.7
PTCH1-211ENST00000488809 PLEKHH2Q8IVE3 1493 aa10.67□□□□□ -0.7
PTCH1-211ENST00000488809 FYCO1Q9BQS8 1478 aa10.67□□□□□ -0.7
PTCH1-211ENST00000488809 ADGBQ8N7X0 1667 aa10.66□□□□□ -0.7
PTCH1-211ENST00000488809 ATP7AQ04656 1500 aa10.66□□□□□ -0.7
PTCH1-211ENST00000488809 PLA2R1Q13018 1463 aa10.66□□□□□ -0.7
PTCH1-211ENST00000488809 ZMYM3Q14202 1370 aa10.65□□□□□ -0.7
PTCH1-211ENST00000488809 CEP170BQ9Y4F5 1589 aaPredicted RBP10.65□□□□□ -0.7
PTCH1-211ENST00000488809 SPAG9O60271 1321 aaKnown RBP10.65□□□□□ -0.7
PTCH1-211ENST00000488809 PLXNC1O60486 1568 aa10.65□□□□□ -0.71
PTCH1-211ENST00000488809 INO80Q9ULG1 1556 aaPredicted RBP10.65□□□□□ -0.71
PTCH1-211ENST00000488809 PKD2Q13563 968 aa10.64□□□□□ -0.71
PTCH1-211ENST00000488809 ZNF777Q9ULD5 760 aaPredicted RBP10.64□□□□□ -0.71
PTCH1-211ENST00000488809 POLR1AO95602 1720 aaPredicted RBP10.64□□□□□ -0.71
PTCH1-211ENST00000488809 A2MP01023 1474 aa10.63□□□□□ -0.71
PTCH1-211ENST00000488809 KIAA1107Q9UPP5 1409 aa10.62□□□□□ -0.71
PTCH1-211ENST00000488809 UBAP1LF5GYI3 381 aa10.62□□□□□ -0.71
PTCH1-211ENST00000488809 GPATCH8Q9UKJ3 1502 aaKnown RBP10.62□□□□□ -0.71
PTCH1-211ENST00000488809 PPP6R1Q9UPN7 881 aa10.61□□□□□ -0.71
PTCH1-211ENST00000488809 TCOF1Q13428 1488 aaKnown RBP10.61□□□□□ -0.71
PTCH1-211ENST00000488809 ZNF335Q9H4Z2 1342 aaPredicted RBP10.6□□□□□ -0.71
PTCH1-211ENST00000488809 NCKAP5LQ9HCH0 1330 aa10.6□□□□□ -0.71
PTCH1-211ENST00000488809 CCNB3Q8WWL7 1395 aa10.6□□□□□ -0.71
PTCH1-211ENST00000488809 PTPRKQ15262 1439 aa10.59□□□□□ -0.71
PTCH1-211ENST00000488809 HNRNPMP52272 730 aaKnown RBP eCLIP10.59□□□□□ -0.71
PTCH1-211ENST00000488809 GGT6Q6P531 493 aa10.59□□□□□ -0.71
PTCH1-211ENST00000488809 CFDP1Q9UEE9 299 aaPredicted RBP10.59□□□□□ -0.71
PTCH1-211ENST00000488809 DNMT1P26358 1616 aaKnown RBP10.58□□□□□ -0.72
PTCH1-211ENST00000488809 A2ML1A8K2U0 1454 aa10.58□□□□□ -0.72
PTCH1-211ENST00000488809 CPS1P31327 1500 aa10.58□□□□□ -0.72
PTCH1-211ENST00000488809 FAM135AQ9P2D6 1515 aa10.58□□□□□ -0.72
PTCH1-211ENST00000488809 MTUS2Q5JR59 1369 aa10.57□□□□□ -0.72
PTCH1-211ENST00000488809 EHBP1L1Q8N3D4 1523 aa10.55□□□□□ -0.72
PTCH1-211ENST00000488809 TOM1O60784 492 aa10.55□□□□□ -0.72
PTCH1-211ENST00000488809 SCAF1Q9H7N4 1312 aaKnown RBP10.55□□□□□ -0.72
PTCH1-211ENST00000488809 KDM5DQ9BY66 1539 aa10.54□□□□□ -0.72
PTCH1-211ENST00000488809 RTEL1-TNFRSF6BF6WH68 1400 aa10.54□□□□□ -0.72
PTCH1-211ENST00000488809 TIAM1Q13009 1591 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms