RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 WASHC2AQ641Q2 1341 aa25.13■■□□□ 1.61
VIM-206ENST00000487938 TSHZ2Q9NRE2 1034 aa25.13■■□□□ 1.61
VIM-206ENST00000487938 DAPK1P53355 1430 aa25.12■■□□□ 1.61
VIM-206ENST00000487938 NUP153P49790 1475 aaKnown RBP25.11■■□□□ 1.61
VIM-206ENST00000487938 EIF4G2P78344 907 aaKnown RBP eCLIP25.11■■□□□ 1.61
VIM-206ENST00000487938 ABCC5O15440 1437 aa25.09■■□□□ 1.61
VIM-206ENST00000487938 FBLN2P98095 1184 aa25.09■■□□□ 1.61
VIM-206ENST00000487938 CEP170Q5SW79 1584 aa25.09■■□□□ 1.61
VIM-206ENST00000487938 CDK11AQ9UQ88 783 aaPredicted RBP25.08■■□□□ 1.61
VIM-206ENST00000487938 ROCK1Q13464 1354 aa25.05■■□□□ 1.6
VIM-206ENST00000487938 NEFLP07196 543 aa25.05■■□□□ 1.6
VIM-206ENST00000487938 RAPGEF6Q8TEU7 1601 aa25.05■■□□□ 1.6
VIM-206ENST00000487938 SLC4A1APQ9BWU0 796 aaKnown RBP25.03■■□□□ 1.6
VIM-206ENST00000487938 ANKRD30BQ9BXX2 1392 aa25.03■■□□□ 1.6
VIM-206ENST00000487938 NUP160Q12769 1436 aa25.02■■□□□ 1.6
VIM-206ENST00000487938 PRG4Q92954 1404 aaPredicted RBP25.02■■□□□ 1.6
VIM-206ENST00000487938 DNMT1P26358 1616 aaKnown RBP25.02■■□□□ 1.6
VIM-206ENST00000487938 C11orf95C9JLR9 678 aaPredicted RBP25.02■■□□□ 1.6
VIM-206ENST00000487938 NBPF8Q3BBV2 869 aa25.01■■□□□ 1.59
VIM-206ENST00000487938 HNRNPUQ00839 825 aaKnown RBP eCLIP24.99■■□□□ 1.59
VIM-206ENST00000487938 CFDP1Q9UEE9 299 aaPredicted RBP24.98■■□□□ 1.59
VIM-206ENST00000487938 ZNF777Q9ULD5 760 aaPredicted RBP24.98■■□□□ 1.59
VIM-206ENST00000487938 JPH4Q96JJ6 628 aa24.98■■□□□ 1.59
VIM-206ENST00000487938 CARMIL2Q6F5E8 1435 aa24.98■■□□□ 1.59
VIM-206ENST00000487938 RPRD2Q5VT52 1461 aaKnown RBP24.96■■□□□ 1.59
VIM-206ENST00000487938 PLB1Q6P1J6 1458 aa24.96■■□□□ 1.59
VIM-206ENST00000487938 TROQ12816 1431 aaPredicted RBP24.94■■□□□ 1.58
VIM-206ENST00000487938 MYT1Q01538 1121 aa24.93■■□□□ 1.58
VIM-206ENST00000487938 CCDC184Q52MB2 194 aa24.92■■□□□ 1.58
VIM-206ENST00000487938 CNTLNQ9NXG0 1405 aa24.91■■□□□ 1.58
VIM-206ENST00000487938 CAMSAP2Q08AD1 1489 aa24.91■■□□□ 1.58
VIM-206ENST00000487938 CCDC7Q96M83 1385 aa24.9■■□□□ 1.58
VIM-206ENST00000487938 TEX14Q8IWB6 1497 aa24.89■■□□□ 1.58
VIM-206ENST00000487938 NCOA1Q15788 1441 aa24.89■■□□□ 1.57
VIM-206ENST00000487938 GPATCH8Q9UKJ3 1502 aaKnown RBP24.89■■□□□ 1.57
VIM-206ENST00000487938 KIF14Q15058 1648 aa24.86■■□□□ 1.57
VIM-206ENST00000487938 PZPP20742 1482 aa24.86■■□□□ 1.57
VIM-206ENST00000487938 PRKRIP1Q9H875 184 aaPredicted RBP24.84■■□□□ 1.57
VIM-206ENST00000487938 KIF7Q2M1P5 1343 aa24.81■■□□□ 1.56
VIM-206ENST00000487938 FAM9BQ8IZU0 186 aa24.81■■□□□ 1.56
VIM-206ENST00000487938 IRX6P78412 446 aaPredicted RBP24.8■■□□□ 1.56
VIM-206ENST00000487938 PKD2Q13563 968 aa24.8■■□□□ 1.56
VIM-206ENST00000487938 ITSN2Q9NZM3 1697 aa24.8■■□□□ 1.56
VIM-206ENST00000487938 SPATA31E1Q6ZUB1 1445 aa24.8■■□□□ 1.56
VIM-206ENST00000487938 ZNF326Q5BKZ1 582 aaKnown RBP24.79■■□□□ 1.56
VIM-206ENST00000487938 PLEKHD1A6NEE1 506 aa24.78■■□□□ 1.56
VIM-206ENST00000487938 MRS2Q9HD23 443 aa24.77■■□□□ 1.56
VIM-206ENST00000487938 ABCA8O94911 1581 aa24.76■■□□□ 1.55
VIM-206ENST00000487938 ADGBQ8N7X0 1667 aa24.76■■□□□ 1.55
VIM-206ENST00000487938 ANKRD30AQ9BXX3 1397 aa24.76■■□□□ 1.55
VIM-206ENST00000487938 ADCY10Q96PN6 1610 aa24.75■■□□□ 1.55
VIM-206ENST00000487938 KIAA1107Q9UPP5 1409 aa24.75■■□□□ 1.55
VIM-206ENST00000487938 ADGRL2O95490 1459 aa24.74■■□□□ 1.55
VIM-206ENST00000487938 CNGB1Q14028 1251 aaPredicted RBP24.72■■□□□ 1.55
VIM-206ENST00000487938 POLR3GLQ9BT43 218 aa24.72■■□□□ 1.55
VIM-206ENST00000487938 ANKRD50Q9ULJ7 1429 aa24.71■■□□□ 1.55
VIM-206ENST00000487938 CROCC2H7BZ55 1655 aa24.7■■□□□ 1.54
VIM-206ENST00000487938 ATP10BO94823 1461 aa24.7■■□□□ 1.54
VIM-206ENST00000487938 RBM19Q9Y4C8 960 aaKnown RBP24.68■■□□□ 1.54
VIM-206ENST00000487938 NUP155O75694 1391 aa24.67■■□□□ 1.54
VIM-206ENST00000487938 PTPRGP23470 1445 aa24.66■■□□□ 1.54
VIM-206ENST00000487938 HNRNPMP52272 730 aaKnown RBP eCLIP24.66■■□□□ 1.54
VIM-206ENST00000487938 MBD5Q9P267 1494 aa24.66■■□□□ 1.54
VIM-206ENST00000487938 CDC42BPAQ5VT25 1732 aa24.65■■□□□ 1.54
VIM-206ENST00000487938 USP47Q96K76 1375 aa24.65■■□□□ 1.54
VIM-206ENST00000487938 TSPY4P0CV99 314 aa24.65■■□□□ 1.54
VIM-206ENST00000487938 TSPY10P0CW01 314 aa24.65■■□□□ 1.54
VIM-206ENST00000487938 ABCC10Q5T3U5 1492 aa24.64■■□□□ 1.53
VIM-206ENST00000487938 C9orf84Q5VXU9 1444 aa24.64■■□□□ 1.53
VIM-206ENST00000487938 POLR1AO95602 1720 aaPredicted RBP24.63■■□□□ 1.53
VIM-206ENST00000487938 CHD1O14646 1710 aa24.62■■□□□ 1.53
VIM-206ENST00000487938 KDM2AQ9Y2K7 1162 aa24.6■■□□□ 1.53
VIM-206ENST00000487938 BCORL1Q5H9F3 1711 aa24.59■■□□□ 1.53
VIM-206ENST00000487938 ZBED9Q6R2W3 1325 aa24.58■■□□□ 1.53
VIM-206ENST00000487938 DHX29Q7Z478 1369 aaKnown RBP24.57■■□□□ 1.52
VIM-206ENST00000487938 CARD11Q9BXL7 1154 aa24.55■■□□□ 1.52
VIM-206ENST00000487938 SHANK2Q9UPX8 1470 aa24.55■■□□□ 1.52
VIM-206ENST00000487938 ANP32EQ9BTT0 268 aa24.54■■□□□ 1.52
VIM-206ENST00000487938 KIF15Q9NS87 1388 aa24.54■■□□□ 1.52
VIM-206ENST00000487938 KDM5CP41229 1560 aa24.53■■□□□ 1.52
VIM-206ENST00000487938 SHROOM2Q13796 1616 aa24.52■■□□□ 1.52
VIM-206ENST00000487938 DCAF11Q8TEB1 546 aa24.52■■□□□ 1.52
VIM-206ENST00000487938 UHRF1BP1Q6BDS2 1440 aa24.5■■□□□ 1.51
VIM-206ENST00000487938 PPP4R2Q9NY27 417 aa24.49■■□□□ 1.51
VIM-206ENST00000487938 ERICH6BQ5W0A0 696 aa24.47■■□□□ 1.51
VIM-206ENST00000487938 RALGAPBQ86X10 1494 aa24.47■■□□□ 1.51
VIM-206ENST00000487938 SENP3-EIF4A1A0A087X0R7 540 aa24.47■■□□□ 1.51
VIM-206ENST00000487938 ST20-MTHFSA0A0A6YYL1 179 aa24.47■■□□□ 1.51
VIM-206ENST00000487938 ARID4BQ4LE39 1312 aaPredicted RBP24.47■■□□□ 1.51
VIM-206ENST00000487938 KDM5DQ9BY66 1539 aa24.44■■□□□ 1.5
VIM-206ENST00000487938 ARHGEF5Q12774 1597 aa24.43■■□□□ 1.5
VIM-206ENST00000487938 B4GALNT3Q6L9W6 998 aa24.42■■□□□ 1.5
VIM-206ENST00000487938 SAMD9LQ8IVG5 1584 aa24.42■■□□□ 1.5
VIM-206ENST00000487938 ARHGEF12Q9NZN5 1544 aa24.41■■□□□ 1.5
VIM-206ENST00000487938 CDC42BPBQ9Y5S2 1711 aa24.41■■□□□ 1.5
VIM-206ENST00000487938 CCDC141Q6ZP82 1450 aa24.4■■□□□ 1.5
VIM-206ENST00000487938 ERCC6L2Q5T890 1561 aa24.4■■□□□ 1.5
VIM-206ENST00000487938 GRWD1Q9BQ67 446 aaKnown RBP eCLIP24.4■■□□□ 1.52e-9■■□□□ 12.6
VIM-206ENST00000487938 TMC1Q8TDI8 760 aa24.39■■□□□ 1.5
VIM-206ENST00000487938 RGL3Q3MIN7 710 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms