RNA–Protein interactions for RNA: ENST00000487676.1

HLA-DQB1-209, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 4,644 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-209ENST00000487676 ARAP1Q96P48 1450 aa19.67■□□□□ 0.74
HLA-DQB1-209ENST00000487676 PHLDB1Q86UU1 1377 aa19.66■□□□□ 0.74
HLA-DQB1-209ENST00000487676 BACH2Q9BYV9 841 aa19.66■□□□□ 0.74
HLA-DQB1-209ENST00000487676 UACAQ9BZF9 1416 aa19.66■□□□□ 0.74
HLA-DQB1-209ENST00000487676 CENPQQ7L2Z9 268 aaPredicted RBP19.66■□□□□ 0.74
HLA-DQB1-209ENST00000487676 KTN1Q86UP2 1357 aaKnown RBP19.66■□□□□ 0.74
HLA-DQB1-209ENST00000487676 GZF1Q9H116 711 aaPredicted RBP19.65■□□□□ 0.74
HLA-DQB1-209ENST00000487676 AKNAQ7Z591 1439 aa19.65■□□□□ 0.74
HLA-DQB1-209ENST00000487676 NLRP13Q86W25 1043 aa19.64■□□□□ 0.74
HLA-DQB1-209ENST00000487676 SMG6Q86US8 1419 aaKnown RBP19.64■□□□□ 0.73
HLA-DQB1-209ENST00000487676 CC2D1BQ5T0F9 858 aaKnown RBP19.64■□□□□ 0.73
HLA-DQB1-209ENST00000487676 CCDC184Q52MB2 194 aa19.63■□□□□ 0.73
HLA-DQB1-209ENST00000487676 KNSTRNQ9Y448 316 aa19.63■□□□□ 0.73
HLA-DQB1-209ENST00000487676 ARID4BQ4LE39 1312 aaPredicted RBP19.61■□□□□ 0.73
HLA-DQB1-209ENST00000487676 MYBBP1AQ9BQG0 1328 aaKnown RBP19.61■□□□□ 0.73
HLA-DQB1-209ENST00000487676 MYH16Q9H6N6 1097 aa19.61■□□□□ 0.73
HLA-DQB1-209ENST00000487676 TSPY4P0CV99 314 aa19.61■□□□□ 0.73
HLA-DQB1-209ENST00000487676 TSPY10P0CW01 314 aa19.61■□□□□ 0.73
HLA-DQB1-209ENST00000487676 KIF15Q9NS87 1388 aa19.6■□□□□ 0.73
HLA-DQB1-209ENST00000487676 LRRC9Q6ZRR7 1453 aa19.6■□□□□ 0.73
HLA-DQB1-209ENST00000487676 MSNP26038 577 aaKnown RBP19.6■□□□□ 0.73
HLA-DQB1-209ENST00000487676 ERICH3Q5RHP9 1530 aa19.6■□□□□ 0.73
HLA-DQB1-209ENST00000487676 KIF7Q2M1P5 1343 aa19.6■□□□□ 0.73
HLA-DQB1-209ENST00000487676 CRBNQ96SW2 442 aa19.6■□□□□ 0.73
HLA-DQB1-209ENST00000487676 HSCBQ8IWL3 235 aa19.59■□□□□ 0.73
HLA-DQB1-209ENST00000487676 PLIN1O60240 522 aa19.58■□□□□ 0.73
HLA-DQB1-209ENST00000487676 SPRYD3Q8NCJ5 442 aa19.57■□□□□ 0.72
HLA-DQB1-209ENST00000487676 NCLP19338 710 aaKnown RBP19.56■□□□□ 0.72
HLA-DQB1-209ENST00000487676 FRAT2O75474 233 aaPredicted RBP19.54■□□□□ 0.72
HLA-DQB1-209ENST00000487676 SYNJ1O43426 1573 aa19.53■□□□□ 0.72
HLA-DQB1-209ENST00000487676 HSP90AB1P08238 724 aaKnown RBP19.53■□□□□ 0.72
HLA-DQB1-209ENST00000487676 C11orf95C9JLR9 678 aaPredicted RBP19.53■□□□□ 0.72
HLA-DQB1-209ENST00000487676 FHOD3Q2V2M9 1422 aa19.53■□□□□ 0.72
HLA-DQB1-209ENST00000487676 CDCA8Q53HL2 280 aa19.52■□□□□ 0.72
HLA-DQB1-209ENST00000487676 RGL3Q3MIN7 710 aa19.52■□□□□ 0.72
HLA-DQB1-209ENST00000487676 PTMAP06454 111 aaKnown RBP19.51■□□□□ 0.71
HLA-DQB1-209ENST00000487676 DCAF11Q8TEB1 546 aa19.51■□□□□ 0.71
HLA-DQB1-209ENST00000487676 PTMSP20962 102 aa19.5■□□□□ 0.71
HLA-DQB1-209ENST00000487676 DNTTIP2Q5QJE6 756 aaKnown RBP19.5■□□□□ 0.71
HLA-DQB1-209ENST00000487676 GBP4Q96PP9 640 aa19.5■□□□□ 0.71
HLA-DQB1-209ENST00000487676 FGD6Q6ZV73 1430 aa19.5■□□□□ 0.71
HLA-DQB1-209ENST00000487676 CFDP1Q9UEE9 299 aaPredicted RBP19.5■□□□□ 0.71
HLA-DQB1-209ENST00000487676 PRXQ9BXM0 1461 aa19.5■□□□□ 0.71
HLA-DQB1-209ENST00000487676 GOLGA2Q08379 1002 aa19.48■□□□□ 0.71
HLA-DQB1-209ENST00000487676 FTSJ3Q8IY81 847 aaKnown RBP19.48■□□□□ 0.71
HLA-DQB1-209ENST00000487676 TMF1P82094 1093 aa19.47■□□□□ 0.71
HLA-DQB1-209ENST00000487676 PKD2Q13563 968 aa19.47■□□□□ 0.71
HLA-DQB1-209ENST00000487676 USP47Q96K76 1375 aa19.47■□□□□ 0.71
HLA-DQB1-209ENST00000487676 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.46■□□□□ 0.71
HLA-DQB1-209ENST00000487676 MAPK8IP3Q9UPT6 1336 aa19.46■□□□□ 0.71
HLA-DQB1-209ENST00000487676 MAPKBP1O60336 1514 aa19.45■□□□□ 0.7
HLA-DQB1-209ENST00000487676 DDX11L8A8MPP1 907 aa19.44■□□□□ 0.7
HLA-DQB1-209ENST00000487676 PNISRQ8TF01 805 aaKnown RBP19.43■□□□□ 0.7
HLA-DQB1-209ENST00000487676 PMFBP1Q8TBY8 1022 aa19.42■□□□□ 0.7
HLA-DQB1-209ENST00000487676 BRD4O60885 1362 aaPredicted RBP19.42■□□□□ 0.7
HLA-DQB1-209ENST00000487676 NEUROD2Q15784 382 aa19.4■□□□□ 0.7
HLA-DQB1-209ENST00000487676 RWDD1Q9H446 243 aaPredicted RBP19.4■□□□□ 0.7
HLA-DQB1-209ENST00000487676 RRP9O43818 475 aaKnown RBP19.4■□□□□ 0.7
HLA-DQB1-209ENST00000487676 TIAM1Q13009 1591 aa19.4■□□□□ 0.7
HLA-DQB1-209ENST00000487676 ST20-MTHFSA0A0A6YYL1 179 aa19.39■□□□□ 0.69
HLA-DQB1-209ENST00000487676 WASHC2CQ9Y4E1 1318 aa19.38■□□□□ 0.69
HLA-DQB1-209ENST00000487676 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.38■□□□□ 0.69
HLA-DQB1-209ENST00000487676 HFM1A2PYH4 1435 aa19.37■□□□□ 0.69
HLA-DQB1-209ENST00000487676 ATAD2BQ9ULI0 1458 aa19.37■□□□□ 0.69
HLA-DQB1-209ENST00000487676 MRE11P49959 708 aa19.37■□□□□ 0.69
HLA-DQB1-209ENST00000487676 IGF1RP08069 1367 aa19.36■□□□□ 0.69
HLA-DQB1-209ENST00000487676 CHMP5Q9NZZ3 219 aa19.35■□□□□ 0.69
HLA-DQB1-209ENST00000487676 MFAP1P55081 439 aaKnown RBP19.34■□□□□ 0.69
HLA-DQB1-209ENST00000487676 CGNL1Q0VF96 1302 aa19.34■□□□□ 0.69
HLA-DQB1-209ENST00000487676 MYOM3Q5VTT5 1437 aa19.34■□□□□ 0.69
HLA-DQB1-209ENST00000487676 CFAP53Q96M91 514 aa19.33■□□□□ 0.68
HLA-DQB1-209ENST00000487676 CDCA7LQ96GN5 454 aa19.32■□□□□ 0.68
HLA-DQB1-209ENST00000487676 EIF4G1Q04637 1599 aaKnown RBP19.32■□□□□ 0.68
HLA-DQB1-209ENST00000487676 SKOR2Q2VWA4 1001 aaPredicted RBP19.32■□□□□ 0.68
HLA-DQB1-209ENST00000487676 FBLN2P98095 1184 aa19.32■□□□□ 0.68
HLA-DQB1-209ENST00000487676 TPM2P07951 284 aa19.3■□□□□ 0.68
HLA-DQB1-209ENST00000487676 NBPF8Q3BBV2 869 aa19.3■□□□□ 0.68
HLA-DQB1-209ENST00000487676 ARID3AQ99856 593 aa19.3■□□□□ 0.68
HLA-DQB1-209ENST00000487676 CENPJQ9HC77 1338 aaPredicted RBP19.29■□□□□ 0.68
HLA-DQB1-209ENST00000487676 MAP3K1Q13233 1512 aa19.28■□□□□ 0.68
HLA-DQB1-209ENST00000487676 CUX1P39880 1505 aa19.28■□□□□ 0.68
HLA-DQB1-209ENST00000487676 CASKIN1Q8WXD9 1431 aa19.27■□□□□ 0.68
HLA-DQB1-209ENST00000487676 CDK11BP21127 795 aaKnown RBP19.27■□□□□ 0.68
HLA-DQB1-209ENST00000487676 NCOA1Q15788 1441 aa19.26■□□□□ 0.67
HLA-DQB1-209ENST00000487676 TOP2BQ02880 1626 aa19.26■□□□□ 0.67
HLA-DQB1-209ENST00000487676 NUP155O75694 1391 aa19.26■□□□□ 0.67
HLA-DQB1-209ENST00000487676 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.26■□□□□ 0.67
HLA-DQB1-209ENST00000487676 POGKQ9P215 609 aa19.26■□□□□ 0.67
HLA-DQB1-209ENST00000487676 PLEKHD1A6NEE1 506 aa19.25■□□□□ 0.67
HLA-DQB1-209ENST00000487676 TRAK2O60296 914 aa19.25■□□□□ 0.67
HLA-DQB1-209ENST00000487676 CALD1Q05682 793 aaKnown RBP19.24■□□□□ 0.67
HLA-DQB1-209ENST00000487676 MAP7D2Q96T17 732 aa19.24■□□□□ 0.67
HLA-DQB1-209ENST00000487676 CHMP4BQ9H444 224 aaKnown RBP19.24■□□□□ 0.67
HLA-DQB1-209ENST00000487676 CASC1Q6TDU7 716 aa19.24■□□□□ 0.67
HLA-DQB1-209ENST00000487676 PANK3Q9H999 370 aa19.23■□□□□ 0.67
HLA-DQB1-209ENST00000487676 EIF3AQ14152 1382 aaKnown RBP19.23■□□□□ 0.67
HLA-DQB1-209ENST00000487676 CHAF1AQ13111 956 aaPredicted RBP19.23■□□□□ 0.67
HLA-DQB1-209ENST00000487676 FYCO1Q9BQS8 1478 aa19.23■□□□□ 0.67
HLA-DQB1-209ENST00000487676 SLC24A1O60721 1099 aa19.23■□□□□ 0.67
HLA-DQB1-209ENST00000487676 FAM13BQ9NYF5 915 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms