RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 ARHGEF12Q9NZN5 1544 aa25.93■■□□□ 1.74
MCF2L-228ENST00000487354 KIF14Q15058 1648 aa25.91■■□□□ 1.74
MCF2L-228ENST00000487354 SCAPERQ9BY12 1400 aa25.9■■□□□ 1.74
MCF2L-228ENST00000487354 LRRIQ1Q96JM4 1722 aa25.89■■□□□ 1.74
MCF2L-228ENST00000487354 PREX1Q8TCU6 1659 aa25.87■■□□□ 1.73
MCF2L-228ENST00000487354 ATP10AO60312 1499 aa25.85■■□□□ 1.73
MCF2L-228ENST00000487354 KDM5CP41229 1560 aa25.84■■□□□ 1.73
MCF2L-228ENST00000487354 C9orf84Q5VXU9 1444 aa25.84■■□□□ 1.73
MCF2L-228ENST00000487354 PLPPR3Q6T4P5 718 aa25.84■■□□□ 1.73
MCF2L-228ENST00000487354 ARHGAP35Q9NRY4 1499 aa25.83■■□□□ 1.73
MCF2L-228ENST00000487354 MLECQ14165 292 aa25.81■■□□□ 1.72
MCF2L-228ENST00000487354 STRCQ7RTU9 1775 aa25.81■■□□□ 1.72
MCF2L-228ENST00000487354 FMN1Q68DA7 1419 aa25.78■■□□□ 1.72
MCF2L-228ENST00000487354 DIP2CQ9Y2E4 1556 aa25.78■■□□□ 1.72
MCF2L-228ENST00000487354 CDC42BPBQ9Y5S2 1711 aa25.77■■□□□ 1.72
MCF2L-228ENST00000487354 ZNF518AQ6AHZ1 1483 aa25.76■■□□□ 1.71
MCF2L-228ENST00000487354 ABCA6Q8N139 1617 aa25.75■■□□□ 1.71
MCF2L-228ENST00000487354 REREQ9P2R6 1566 aa25.74■■□□□ 1.71
MCF2L-228ENST00000487354 TROQ12816 1431 aaPredicted RBP25.73■■□□□ 1.71
MCF2L-228ENST00000487354 CERKQ8TCT0 537 aa25.73■■□□□ 1.71
MCF2L-228ENST00000487354 ARHGAP5Q13017 1502 aa25.73■■□□□ 1.71
MCF2L-228ENST00000487354 EFCAB2Q5VUJ9 269 aa25.72■■□□□ 1.71
MCF2L-228ENST00000487354 C3P01024 1663 aa25.7■■□□□ 1.7
MCF2L-228ENST00000487354 PREX2Q70Z35 1606 aa25.7■■□□□ 1.7
MCF2L-228ENST00000487354 CEBPAP49715 358 aaPredicted RBP25.69■■□□□ 1.7
MCF2L-228ENST00000487354 ITSN2Q9NZM3 1697 aa25.68■■□□□ 1.7
MCF2L-228ENST00000487354 SETD1BQ9UPS6 1966 aaKnown RBP25.67■■□□□ 1.7
MCF2L-228ENST00000487354 ABCC1P33527 1531 aa25.67■■□□□ 1.7
MCF2L-228ENST00000487354 AFAP1Q8N556 730 aa25.66■■□□□ 1.7
MCF2L-228ENST00000487354 MLH3Q9UHC1 1453 aa25.64■■□□□ 1.69
MCF2L-228ENST00000487354 KIDINS220Q9ULH0 1771 aa25.62■■□□□ 1.69
MCF2L-228ENST00000487354 EHMT2Q96KQ7 1210 aa25.62■■□□□ 1.69
MCF2L-228ENST00000487354 ATP1B4Q9UN42 357 aaPredicted RBP25.62■■□□□ 1.69
MCF2L-228ENST00000487354 CDC42BPAQ5VT25 1732 aa25.62■■□□□ 1.69
MCF2L-228ENST00000487354 AGLP35573 1532 aa25.62■■□□□ 1.69
MCF2L-228ENST00000487354 CLIP1P30622 1438 aa25.61■■□□□ 1.69
MCF2L-228ENST00000487354 UHRF1BP1Q6BDS2 1440 aa25.61■■□□□ 1.69
MCF2L-228ENST00000487354 UBTFP17480 764 aaKnown RBP25.6■■□□□ 1.69
MCF2L-228ENST00000487354 CDK11AQ9UQ88 783 aaPredicted RBP25.6■■□□□ 1.69
MCF2L-228ENST00000487354 TRAPPC8Q9Y2L5 1435 aa25.6■■□□□ 1.69
MCF2L-228ENST00000487354 CASKIN1Q8WXD9 1431 aa25.52■■□□□ 1.68
MCF2L-228ENST00000487354 CCDC18Q5T9S5 1454 aa25.52■■□□□ 1.68
MCF2L-228ENST00000487354 LTBP4Q8N2S1 1624 aa25.52■■□□□ 1.68
MCF2L-228ENST00000487354 PTPRTO14522 1441 aa25.51■■□□□ 1.67
MCF2L-228ENST00000487354 MROH2AA6NES4 1674 aa25.49■■□□□ 1.67
MCF2L-228ENST00000487354 SAMD9LQ8IVG5 1584 aa25.49■■□□□ 1.67
MCF2L-228ENST00000487354 DMRT2Q9Y5R5 561 aa25.46■■□□□ 1.67
MCF2L-228ENST00000487354 NCOA1Q15788 1441 aa25.45■■□□□ 1.66
MCF2L-228ENST00000487354 SYCP2Q9BX26 1530 aa25.43■■□□□ 1.66
MCF2L-228ENST00000487354 MYT1LQ9UL68 1186 aa25.43■■□□□ 1.66
MCF2L-228ENST00000487354 CHIC1Q5VXU3 224 aa25.42■■□□□ 1.66
MCF2L-228ENST00000487354 CNTLNQ9NXG0 1405 aa25.42■■□□□ 1.66
MCF2L-228ENST00000487354 FYCO1Q9BQS8 1478 aa25.41■■□□□ 1.66
MCF2L-228ENST00000487354 SUPT6HQ7KZ85 1726 aaKnown RBP25.41■■□□□ 1.66
MCF2L-228ENST00000487354 PLXNC1O60486 1568 aa25.41■■□□□ 1.66
MCF2L-228ENST00000487354 ILDR2Q71H61 639 aa25.41■■□□□ 1.66
MCF2L-228ENST00000487354 INO80Q9ULG1 1556 aaPredicted RBP25.4■■□□□ 1.66
MCF2L-228ENST00000487354 ZNF142P52746 1687 aaPredicted RBP25.39■■□□□ 1.65
MCF2L-228ENST00000487354 CAMSAP1Q5T5Y3 1602 aa25.38■■□□□ 1.65
MCF2L-228ENST00000487354 SPATA31D1Q6ZQQ2 1576 aa25.38■■□□□ 1.65
MCF2L-228ENST00000487354 NPATQ14207 1427 aa25.37■■□□□ 1.65
MCF2L-228ENST00000487354 GPATCH8Q9UKJ3 1502 aaKnown RBP25.37■■□□□ 1.65
MCF2L-228ENST00000487354 CLTCQ00610 1675 aaKnown RBP25.37■■□□□ 1.65
MCF2L-228ENST00000487354 IQSEC2Q5JU85 1478 aa25.37■■□□□ 1.65
MCF2L-228ENST00000487354 DISP3Q9P2K9 1392 aa25.37■■□□□ 1.65
MCF2L-228ENST00000487354 MYO3AQ8NEV4 1616 aa25.36■■□□□ 1.65
MCF2L-228ENST00000487354 ATP7AQ04656 1500 aa25.35■■□□□ 1.65
MCF2L-228ENST00000487354 ESF1Q9H501 851 aaKnown RBP25.3■■□□□ 1.64
MCF2L-228ENST00000487354 ZMYM3Q14202 1370 aa25.3■■□□□ 1.64
MCF2L-228ENST00000487354 KIAA1107Q9UPP5 1409 aa25.28■■□□□ 1.64
MCF2L-228ENST00000487354 CEP170BQ9Y4F5 1589 aaPredicted RBP25.27■■□□□ 1.64
MCF2L-228ENST00000487354 ADGBQ8N7X0 1667 aa25.26■■□□□ 1.63
MCF2L-228ENST00000487354 HNRNPMP52272 730 aaKnown RBP eCLIP25.25■■□□□ 1.63
MCF2L-228ENST00000487354 SPAG9O60271 1321 aaKnown RBP25.25■■□□□ 1.63
MCF2L-228ENST00000487354 PTPRKQ15262 1439 aa25.25■■□□□ 1.63
MCF2L-228ENST00000487354 A2MP01023 1474 aa25.25■■□□□ 1.63
MCF2L-228ENST00000487354 PLA2R1Q13018 1463 aa25.24■■□□□ 1.63
MCF2L-228ENST00000487354 TCOF1Q13428 1488 aaKnown RBP25.24■■□□□ 1.63
MCF2L-228ENST00000487354 SOCS7O14512 581 aa25.24■■□□□ 1.63
MCF2L-228ENST00000487354 ZNF777Q9ULD5 760 aaPredicted RBP25.24■■□□□ 1.63
MCF2L-228ENST00000487354 PLEKHH2Q8IVE3 1493 aa25.22■■□□□ 1.63
MCF2L-228ENST00000487354 TIAM1Q13009 1591 aa25.21■■□□□ 1.63
MCF2L-228ENST00000487354 NCKAP5LQ9HCH0 1330 aa25.2■■□□□ 1.62
MCF2L-228ENST00000487354 ZNF335Q9H4Z2 1342 aaPredicted RBP25.19■■□□□ 1.62
MCF2L-228ENST00000487354 MBD5Q9P267 1494 aa25.15■■□□□ 1.62
MCF2L-228ENST00000487354 CCNB3Q8WWL7 1395 aa25.15■■□□□ 1.62
MCF2L-228ENST00000487354 DNMT1P26358 1616 aaKnown RBP25.15■■□□□ 1.62
MCF2L-228ENST00000487354 CFDP1Q9UEE9 299 aaPredicted RBP25.14■■□□□ 1.62
MCF2L-228ENST00000487354 POLR1AO95602 1720 aaPredicted RBP25.12■■□□□ 1.61
MCF2L-228ENST00000487354 NEURL4Q96JN8 1562 aa25.11■■□□□ 1.61
MCF2L-228ENST00000487354 A2ML1A8K2U0 1454 aa25.1■■□□□ 1.61
MCF2L-228ENST00000487354 PKD2Q13563 968 aa25.1■■□□□ 1.61
MCF2L-228ENST00000487354 EHBP1L1Q8N3D4 1523 aa25.1■■□□□ 1.61
MCF2L-228ENST00000487354 ZNF644Q9H582 1327 aaPredicted RBP25.1■■□□□ 1.61
MCF2L-228ENST00000487354 GGT6Q6P531 493 aa25.08■■□□□ 1.61
MCF2L-228ENST00000487354 MTUS2Q5JR59 1369 aa25.07■■□□□ 1.6
MCF2L-228ENST00000487354 RTEL1-TNFRSF6BF6WH68 1400 aa25.05■■□□□ 1.6
MCF2L-228ENST00000487354 PPP6R1Q9UPN7 881 aa25.03■■□□□ 1.6
MCF2L-228ENST00000487354 CEP162Q5TB80 1403 aa25.03■■□□□ 1.6
MCF2L-228ENST00000487354 UBAP1LF5GYI3 381 aa25.02■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms