RNA–Protein interactions for RNA: ENST00000487215.1

SMPDL3A-202, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2

Gene SMPDL3A, Length 903 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-202ENST00000487215 UBTFP17480 764 aaKnown RBP32.34■■■□□ 2.77
SMPDL3A-202ENST00000487215 PLPPR3Q6T4P5 718 aa32.34■■■□□ 2.77
SMPDL3A-202ENST00000487215 ARHGAP35Q9NRY4 1499 aa32.34■■■□□ 2.77
SMPDL3A-202ENST00000487215 ATP1B4Q9UN42 357 aaPredicted RBP32.33■■■□□ 2.77
SMPDL3A-202ENST00000487215 MLECQ14165 292 aa32.31■■■□□ 2.76
SMPDL3A-202ENST00000487215 HSPA2P54652 639 aa32.3■■■□□ 2.76
SMPDL3A-202ENST00000487215 MYO5CQ9NQX4 1742 aa32.29■■■□□ 2.76
SMPDL3A-202ENST00000487215 KIF14Q15058 1648 aa32.27■■■□□ 2.76
SMPDL3A-202ENST00000487215 EFCAB2Q5VUJ9 269 aa32.27■■■□□ 2.76
SMPDL3A-202ENST00000487215 FER1L4A9Z1Z3 1794 aa32.27■■■□□ 2.76
SMPDL3A-202ENST00000487215 ATP10AO60312 1499 aa32.25■■■□□ 2.75
SMPDL3A-202ENST00000487215 CDK11AQ9UQ88 783 aaPredicted RBP32.25■■■□□ 2.75
SMPDL3A-202ENST00000487215 C9orf84Q5VXU9 1444 aa32.24■■■□□ 2.75
SMPDL3A-202ENST00000487215 ARHGEF12Q9NZN5 1544 aa32.23■■■□□ 2.75
SMPDL3A-202ENST00000487215 TROQ12816 1431 aaPredicted RBP32.22■■■□□ 2.75
SMPDL3A-202ENST00000487215 ZNF518AQ6AHZ1 1483 aa32.17■■■□□ 2.74
SMPDL3A-202ENST00000487215 ARHGAP5Q13017 1502 aa32.17■■■□□ 2.74
SMPDL3A-202ENST00000487215 CLIP1P30622 1438 aa32.16■■■□□ 2.74
SMPDL3A-202ENST00000487215 KDM5CP41229 1560 aa32.14■■■□□ 2.74
SMPDL3A-202ENST00000487215 LRRIQ1Q96JM4 1722 aa32.14■■■□□ 2.74
SMPDL3A-202ENST00000487215 CHIC1Q5VXU3 224 aa32.12■■■□□ 2.73
SMPDL3A-202ENST00000487215 AFAP1Q8N556 730 aa32.11■■■□□ 2.73
SMPDL3A-202ENST00000487215 PREX1Q8TCU6 1659 aa32.07■■■□□ 2.72
SMPDL3A-202ENST00000487215 CEBPAP49715 358 aaPredicted RBP32.06■■■□□ 2.72
SMPDL3A-202ENST00000487215 DIP2CQ9Y2E4 1556 aa32.06■■■□□ 2.72
SMPDL3A-202ENST00000487215 CDC42BPBQ9Y5S2 1711 aa32.03■■■□□ 2.72
SMPDL3A-202ENST00000487215 MYT1LQ9UL68 1186 aa32.02■■■□□ 2.72
SMPDL3A-202ENST00000487215 REREQ9P2R6 1566 aa32.02■■■□□ 2.72
SMPDL3A-202ENST00000487215 CERKQ8TCT0 537 aa32.01■■■□□ 2.71
SMPDL3A-202ENST00000487215 MLH3Q9UHC1 1453 aa32■■■□□ 2.71
SMPDL3A-202ENST00000487215 PREX2Q70Z35 1606 aa32■■■□□ 2.71
SMPDL3A-202ENST00000487215 ABCA6Q8N139 1617 aa32■■■□□ 2.71
SMPDL3A-202ENST00000487215 ABCC1P33527 1531 aa31.99■■■□□ 2.71
SMPDL3A-202ENST00000487215 CASKIN1Q8WXD9 1431 aa31.99■■■□□ 2.71
SMPDL3A-202ENST00000487215 CCDC18Q5T9S5 1454 aa31.98■■■□□ 2.71
SMPDL3A-202ENST00000487215 TRAPPC8Q9Y2L5 1435 aa31.97■■■□□ 2.71
SMPDL3A-202ENST00000487215 UHRF1BP1Q6BDS2 1440 aa31.93■■■□□ 2.7
SMPDL3A-202ENST00000487215 ITSN2Q9NZM3 1697 aa31.92■■■□□ 2.7
SMPDL3A-202ENST00000487215 AGLP35573 1532 aa31.91■■■□□ 2.7
SMPDL3A-202ENST00000487215 STRCQ7RTU9 1775 aa31.89■■■□□ 2.69
SMPDL3A-202ENST00000487215 C3P01024 1663 aa31.87■■■□□ 2.69
SMPDL3A-202ENST00000487215 CDC42BPAQ5VT25 1732 aa31.86■■■□□ 2.69
SMPDL3A-202ENST00000487215 KIDINS220Q9ULH0 1771 aa31.85■■■□□ 2.69
SMPDL3A-202ENST00000487215 FYCO1Q9BQS8 1478 aa31.84■■■□□ 2.69
SMPDL3A-202ENST00000487215 DMRT2Q9Y5R5 561 aa31.84■■■□□ 2.69
SMPDL3A-202ENST00000487215 SETD1BQ9UPS6 1966 aaKnown RBP31.81■■■□□ 2.68
SMPDL3A-202ENST00000487215 ESF1Q9H501 851 aaKnown RBP31.81■■■□□ 2.68
SMPDL3A-202ENST00000487215 SAMD9LQ8IVG5 1584 aa31.78■■■□□ 2.68
SMPDL3A-202ENST00000487215 CNTLNQ9NXG0 1405 aa31.75■■■□□ 2.67
SMPDL3A-202ENST00000487215 ZNF777Q9ULD5 760 aaPredicted RBP31.75■■■□□ 2.67
SMPDL3A-202ENST00000487215 SYCP2Q9BX26 1530 aa31.75■■■□□ 2.67
SMPDL3A-202ENST00000487215 GPATCH8Q9UKJ3 1502 aaKnown RBP31.75■■■□□ 2.67
SMPDL3A-202ENST00000487215 PTPRTO14522 1441 aa31.73■■■□□ 2.67
SMPDL3A-202ENST00000487215 SPAG9O60271 1321 aaKnown RBP31.68■■■□□ 2.66
SMPDL3A-202ENST00000487215 HNRNPMP52272 730 aaKnown RBP eCLIP31.67■■■□□ 2.66
SMPDL3A-202ENST00000487215 MROH2AA6NES4 1674 aa31.65■■■□□ 2.66
SMPDL3A-202ENST00000487215 NCOA1Q15788 1441 aa31.65■■■□□ 2.66
SMPDL3A-202ENST00000487215 NPATQ14207 1427 aa31.64■■■□□ 2.66
SMPDL3A-202ENST00000487215 KIAA1107Q9UPP5 1409 aa31.64■■■□□ 2.66
SMPDL3A-202ENST00000487215 ATP7AQ04656 1500 aa31.64■■■□□ 2.66
SMPDL3A-202ENST00000487215 PLEKHH2Q8IVE3 1493 aa31.62■■■□□ 2.65
SMPDL3A-202ENST00000487215 SUPT6HQ7KZ85 1726 aaKnown RBP31.61■■■□□ 2.65
SMPDL3A-202ENST00000487215 INO80Q9ULG1 1556 aaPredicted RBP31.61■■■□□ 2.65
SMPDL3A-202ENST00000487215 CFDP1Q9UEE9 299 aaPredicted RBP31.61■■■□□ 2.65
SMPDL3A-202ENST00000487215 PLXNC1O60486 1568 aa31.6■■■□□ 2.65
SMPDL3A-202ENST00000487215 ZMYM3Q14202 1370 aa31.6■■■□□ 2.65
SMPDL3A-202ENST00000487215 CCNB3Q8WWL7 1395 aa31.59■■■□□ 2.65
SMPDL3A-202ENST00000487215 LTBP4Q8N2S1 1624 aa31.59■■■□□ 2.65
SMPDL3A-202ENST00000487215 A2MP01023 1474 aa31.58■■■□□ 2.65
SMPDL3A-202ENST00000487215 CAMSAP1Q5T5Y3 1602 aa31.57■■■□□ 2.64
SMPDL3A-202ENST00000487215 MTUS2Q5JR59 1369 aa31.55■■■□□ 2.64
SMPDL3A-202ENST00000487215 CLTCQ00610 1675 aaKnown RBP31.54■■■□□ 2.64
SMPDL3A-202ENST00000487215 IQSEC2Q5JU85 1478 aa31.49■■■□□ 2.63
SMPDL3A-202ENST00000487215 DISP3Q9P2K9 1392 aa31.48■■■□□ 2.63
SMPDL3A-202ENST00000487215 MYO3AQ8NEV4 1616 aa31.48■■■□□ 2.63
SMPDL3A-202ENST00000487215 TIAM1Q13009 1591 aa31.47■■■□□ 2.63
SMPDL3A-202ENST00000487215 PTPRKQ15262 1439 aa31.47■■■□□ 2.63
SMPDL3A-202ENST00000487215 GGT6Q6P531 493 aa31.46■■■□□ 2.63
SMPDL3A-202ENST00000487215 ZNF142P52746 1687 aaPredicted RBP31.45■■■□□ 2.63
SMPDL3A-202ENST00000487215 ZNF644Q9H582 1327 aaPredicted RBP31.45■■■□□ 2.62
SMPDL3A-202ENST00000487215 NCKAP5LQ9HCH0 1330 aa31.45■■■□□ 2.62
SMPDL3A-202ENST00000487215 ADGBQ8N7X0 1667 aa31.44■■■□□ 2.62
SMPDL3A-202ENST00000487215 EHBP1L1Q8N3D4 1523 aa31.44■■■□□ 2.62
SMPDL3A-202ENST00000487215 MBD5Q9P267 1494 aa31.43■■■□□ 2.62
SMPDL3A-202ENST00000487215 CEP170BQ9Y4F5 1589 aaPredicted RBP31.43■■■□□ 2.62
SMPDL3A-202ENST00000487215 PLA2R1Q13018 1463 aa31.42■■■□□ 2.62
SMPDL3A-202ENST00000487215 ILDR2Q71H61 639 aa31.39■■■□□ 2.62
SMPDL3A-202ENST00000487215 PPP6R1Q9UPN7 881 aa31.38■■■□□ 2.61
SMPDL3A-202ENST00000487215 CEP162Q5TB80 1403 aa31.38■■■□□ 2.61
SMPDL3A-202ENST00000487215 ZNF335Q9H4Z2 1342 aaPredicted RBP31.37■■■□□ 2.61
SMPDL3A-202ENST00000487215 TCOF1Q13428 1488 aaKnown RBP31.37■■■□□ 2.61
SMPDL3A-202ENST00000487215 RTEL1-TNFRSF6BF6WH68 1400 aa31.36■■■□□ 2.61
SMPDL3A-202ENST00000487215 PKD2Q13563 968 aa31.36■■■□□ 2.61
SMPDL3A-202ENST00000487215 SPATA31D1Q6ZQQ2 1576 aa31.34■■■□□ 2.61
SMPDL3A-202ENST00000487215 DHX29Q7Z478 1369 aaKnown RBP31.31■■■□□ 2.6
SMPDL3A-202ENST00000487215 A2ML1A8K2U0 1454 aa31.28■■■□□ 2.6
SMPDL3A-202ENST00000487215 CCDC141Q6ZP82 1450 aa31.27■■■□□ 2.6
SMPDL3A-202ENST00000487215 DNMT1P26358 1616 aaKnown RBP31.25■■■□□ 2.59
SMPDL3A-202ENST00000487215 NCOA2Q15596 1464 aa31.25■■■□□ 2.59
SMPDL3A-202ENST00000487215 CAMSAP2Q08AD1 1489 aa31.24■■■□□ 2.59
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms