RNA–Protein interactions for RNA: ENST00000487062.1

SF3A3-206, Transcript of splicing factor 3a subunit 3, humanhuman

TSL 2

Gene SF3A3, Length 775 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-206ENST00000487062 KIF14Q15058 1648 aa10.55□□□□□ -0.72
SF3A3-206ENST00000487062 UHRF1BP1LA0JNW5 1464 aa10.54□□□□□ -0.72
SF3A3-206ENST00000487062 ITGAEP38570 1179 aa10.53□□□□□ -0.72
SF3A3-206ENST00000487062 TCOF1Q13428 1488 aaKnown RBP10.53□□□□□ -0.72
SF3A3-206ENST00000487062 ZCCHC11Q5TAX3 1644 aaKnown RBP10.5□□□□□ -0.73
SF3A3-206ENST00000487062 CDC42BPAQ5VT25 1732 aa10.49□□□□□ -0.73
SF3A3-206ENST00000487062 KDM5BQ9UGL1 1544 aa10.48□□□□□ -0.73
SF3A3-206ENST00000487062 SETD5Q9C0A6 1442 aa10.48□□□□□ -0.73
SF3A3-206ENST00000487062 ABCC10Q5T3U5 1492 aa10.47□□□□□ -0.73
SF3A3-206ENST00000487062 GPATCH8Q9UKJ3 1502 aaKnown RBP10.46□□□□□ -0.74
SF3A3-206ENST00000487062 DNMT1P26358 1616 aaKnown RBP10.45□□□□□ -0.74
SF3A3-206ENST00000487062 RNF216Q9NWF9 866 aaPredicted RBP10.45□□□□□ -0.74
SF3A3-206ENST00000487062 CFDP1Q9UEE9 299 aaPredicted RBP10.45□□□□□ -0.74
SF3A3-206ENST00000487062 MYO5CQ9NQX4 1742 aa10.44□□□□□ -0.74
SF3A3-206ENST00000487062 PREX2Q70Z35 1606 aa10.44□□□□□ -0.74
SF3A3-206ENST00000487062 RAB3GAP2Q9H2M9 1393 aa10.44□□□□□ -0.74
SF3A3-206ENST00000487062 CAMSAP2Q08AD1 1489 aa10.43□□□□□ -0.74
SF3A3-206ENST00000487062 CLSPNQ9HAW4 1339 aa10.43□□□□□ -0.74
SF3A3-206ENST00000487062 CDC42BPBQ9Y5S2 1711 aa10.43□□□□□ -0.74
SF3A3-206ENST00000487062 GCC2Q8IWJ2 1684 aa10.43□□□□□ -0.74
SF3A3-206ENST00000487062 HFM1A2PYH4 1435 aa10.42□□□□□ -0.74
SF3A3-206ENST00000487062 AKNAQ7Z591 1439 aa10.42□□□□□ -0.74
SF3A3-206ENST00000487062 ADGBQ8N7X0 1667 aa10.42□□□□□ -0.74
SF3A3-206ENST00000487062 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.42□□□□□ -0.74
SF3A3-206ENST00000487062 DAPK1P53355 1430 aa10.41□□□□□ -0.74
SF3A3-206ENST00000487062 CROCC2H7BZ55 1655 aa10.41□□□□□ -0.74
SF3A3-206ENST00000487062 NPM1P06748 294 aaKnown RBP eCLIP10.41□□□□□ -0.74
SF3A3-206ENST00000487062 PTPRKQ15262 1439 aa10.41□□□□□ -0.74
SF3A3-206ENST00000487062 DHX57Q6P158 1386 aaKnown RBP10.4□□□□□ -0.74
SF3A3-206ENST00000487062 TTC37Q6PGP7 1564 aa10.4□□□□□ -0.74
SF3A3-206ENST00000487062 ACIN1Q9UKV3 1341 aaKnown RBP10.4□□□□□ -0.74
SF3A3-206ENST00000487062 WDR7Q9Y4E6 1490 aa10.39□□□□□ -0.75
SF3A3-206ENST00000487062 MAPK8IP2Q13387 824 aaPredicted RBP10.39□□□□□ -0.75
SF3A3-206ENST00000487062 ZNF777Q9ULD5 760 aaPredicted RBP10.39□□□□□ -0.75
SF3A3-206ENST00000487062 NAIPQ13075 1403 aa10.39□□□□□ -0.75
SF3A3-206ENST00000487062 ROCK1Q13464 1354 aa10.39□□□□□ -0.75
SF3A3-206ENST00000487062 ARHGAP5Q13017 1502 aa10.38□□□□□ -0.75
SF3A3-206ENST00000487062 KCNH8Q96L42 1107 aa10.38□□□□□ -0.75
SF3A3-206ENST00000487062 ABCC5O15440 1437 aa10.38□□□□□ -0.75
SF3A3-206ENST00000487062 ARHGEF5Q12774 1597 aa10.38□□□□□ -0.75
SF3A3-206ENST00000487062 ZNF644Q9H582 1327 aaPredicted RBP10.37□□□□□ -0.75
SF3A3-206ENST00000487062 PLEKHH2Q8IVE3 1493 aa10.37□□□□□ -0.75
SF3A3-206ENST00000487062 CHIC2Q9UKJ5 165 aa10.37□□□□□ -0.75
SF3A3-206ENST00000487062 RIMBP3CA6NJZ7 1639 aa10.36□□□□□ -0.75
SF3A3-206ENST00000487062 RIMBP3BA6NNM3 1639 aa10.36□□□□□ -0.75
SF3A3-206ENST00000487062 RIMBP3Q9UFD9 1639 aa10.36□□□□□ -0.75
SF3A3-206ENST00000487062 SHANK2Q9UPX8 1470 aa10.36□□□□□ -0.75
SF3A3-206ENST00000487062 SAMD9LQ8IVG5 1584 aa10.36□□□□□ -0.75
SF3A3-206ENST00000487062 RSPH4AQ5TD94 716 aa10.36□□□□□ -0.75
SF3A3-206ENST00000487062 ARAP3Q8WWN8 1544 aa10.36□□□□□ -0.75
SF3A3-206ENST00000487062 ABCA9Q8IUA7 1624 aa10.36□□□□□ -0.75
SF3A3-206ENST00000487062 PLCH2O75038 1416 aa10.35□□□□□ -0.75
SF3A3-206ENST00000487062 ASXL2Q76L83 1435 aa10.35□□□□□ -0.75
SF3A3-206ENST00000487062 RRP7BPQ9NSQ0 103 aa10.35□□□□□ -0.75
SF3A3-206ENST00000487062 ADGRL2O95490 1459 aa10.35□□□□□ -0.75
SF3A3-206ENST00000487062 TSPY4P0CV99 314 aa10.34□□□□□ -0.75
SF3A3-206ENST00000487062 TSPY10P0CW01 314 aa10.34□□□□□ -0.75
SF3A3-206ENST00000487062 SLC4A2P04920 1241 aa10.33□□□□□ -0.76
SF3A3-206ENST00000487062 FKBP8Q14318 412 aa10.33□□□□□ -0.76
SF3A3-206ENST00000487062 EFCAB2Q5VUJ9 269 aa10.33□□□□□ -0.76
SF3A3-206ENST00000487062 ANKRD30AQ9BXX3 1397 aa10.33□□□□□ -0.76
SF3A3-206ENST00000487062 CCDC141Q6ZP82 1450 aa10.33□□□□□ -0.76
SF3A3-206ENST00000487062 KIAA1107Q9UPP5 1409 aa10.33□□□□□ -0.76
SF3A3-206ENST00000487062 ATXN8OSP0DMR3 200 aa10.32□□□□□ -0.76
SF3A3-206ENST00000487062 SYCP2Q9BX26 1530 aa10.32□□□□□ -0.76
SF3A3-206ENST00000487062 C9orf84Q5VXU9 1444 aa10.32□□□□□ -0.76
SF3A3-206ENST00000487062 MAST1Q9Y2H9 1570 aa10.31□□□□□ -0.76
SF3A3-206ENST00000487062 MBD5Q9P267 1494 aa10.31□□□□□ -0.76
SF3A3-206ENST00000487062 NCOA1Q15788 1441 aa10.31□□□□□ -0.76
SF3A3-206ENST00000487062 MAPKBP1O60336 1514 aa10.3□□□□□ -0.76
SF3A3-206ENST00000487062 HNRNPMP52272 730 aaKnown RBP eCLIP10.3□□□□□ -0.76
SF3A3-206ENST00000487062 CFAP74Q9C0B2 1584 aa10.3□□□□□ -0.76
SF3A3-206ENST00000487062 KDM6BO15054 1643 aa10.29□□□□□ -0.76
SF3A3-206ENST00000487062 ABCC1P33527 1531 aa10.29□□□□□ -0.76
SF3A3-206ENST00000487062 TRIM52Q96A61 297 aa10.28□□□□□ -0.76
SF3A3-206ENST00000487062 PLXNC1O60486 1568 aa10.27□□□□□ -0.76
SF3A3-206ENST00000487062 CYB5RLQ6IPT4 315 aa10.27□□□□□ -0.77
SF3A3-206ENST00000487062 FANCAO15360 1455 aa10.27□□□□□ -0.77
SF3A3-206ENST00000487062 ANKRD50Q9ULJ7 1429 aa10.25□□□□□ -0.77
SF3A3-206ENST00000487062 KIF15Q9NS87 1388 aa10.25□□□□□ -0.77
SF3A3-206ENST00000487062 CD109Q6YHK3 1445 aa10.24□□□□□ -0.77
SF3A3-206ENST00000487062 ARHGEF12Q9NZN5 1544 aa10.24□□□□□ -0.77
SF3A3-206ENST00000487062 HOXD11P31277 338 aaPredicted RBP10.24□□□□□ -0.77
SF3A3-206ENST00000487062 TIMELESSQ9UNS1 1208 aa10.24□□□□□ -0.77
SF3A3-206ENST00000487062 ADGRL1O94910 1474 aa10.23□□□□□ -0.77
SF3A3-206ENST00000487062 DUOX2Q9NRD8 1548 aa10.23□□□□□ -0.77
SF3A3-206ENST00000487062 GLI2P10070 1586 aa10.22□□□□□ -0.77
SF3A3-206ENST00000487062 MPHOSPH9Q99550 1183 aa10.22□□□□□ -0.77
SF3A3-206ENST00000487062 RTEL1-TNFRSF6BF6WH68 1400 aa10.22□□□□□ -0.77
SF3A3-206ENST00000487062 MAP3K4Q9Y6R4 1608 aa10.22□□□□□ -0.77
SF3A3-206ENST00000487062 MYCNP04198 464 aaPredicted RBP10.21□□□□□ -0.77
SF3A3-206ENST00000487062 SCAPERQ9BY12 1400 aa10.21□□□□□ -0.78
SF3A3-206ENST00000487062 TRAPPC8Q9Y2L5 1435 aa10.21□□□□□ -0.78
SF3A3-206ENST00000487062 KDM5DQ9BY66 1539 aa10.21□□□□□ -0.78
SF3A3-206ENST00000487062 SPAG9O60271 1321 aaKnown RBP10.2□□□□□ -0.78
SF3A3-206ENST00000487062 NEUROD1Q13562 356 aa10.2□□□□□ -0.78
SF3A3-206ENST00000487062 NEO1Q92859 1461 aa10.2□□□□□ -0.78
SF3A3-206ENST00000487062 INO80Q9ULG1 1556 aaPredicted RBP10.2□□□□□ -0.78
SF3A3-206ENST00000487062 UNC13BO14795 1591 aa10.19□□□□□ -0.78
SF3A3-206ENST00000487062 ATP7AQ04656 1500 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms