RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 CHIC1Q5VXU3 224 aa23.04■■□□□ 1.28
SQSTM1-208ENST00000485412 MAGI2Q86UL8 1455 aa23.04■■□□□ 1.28
SQSTM1-208ENST00000485412 KIF14Q15058 1648 aa23.04■■□□□ 1.28
SQSTM1-208ENST00000485412 HECW1Q76N89 1606 aa23.04■■□□□ 1.28
SQSTM1-208ENST00000485412 UBTFP17480 764 aaKnown RBP23.03■■□□□ 1.28
SQSTM1-208ENST00000485412 MLECQ14165 292 aa23.02■■□□□ 1.28
SQSTM1-208ENST00000485412 MYO5CQ9NQX4 1742 aa23■■□□□ 1.27
SQSTM1-208ENST00000485412 SCAPERQ9BY12 1400 aa22.99■■□□□ 1.27
SQSTM1-208ENST00000485412 ATP1B4Q9UN42 357 aaPredicted RBP22.98■■□□□ 1.27
SQSTM1-208ENST00000485412 FMN1Q68DA7 1419 aa22.98■■□□□ 1.27
SQSTM1-208ENST00000485412 PLCH2O75038 1416 aa22.97■■□□□ 1.27
SQSTM1-208ENST00000485412 ATP10AO60312 1499 aa22.92■■□□□ 1.26
SQSTM1-208ENST00000485412 C9orf84Q5VXU9 1444 aa22.91■■□□□ 1.26
SQSTM1-208ENST00000485412 PREX1Q8TCU6 1659 aa22.9■■□□□ 1.26
SQSTM1-208ENST00000485412 EFCAB2Q5VUJ9 269 aa22.9■■□□□ 1.26
SQSTM1-208ENST00000485412 ARHGEF12Q9NZN5 1544 aa22.9■■□□□ 1.26
SQSTM1-208ENST00000485412 CERKQ8TCT0 537 aa22.89■■□□□ 1.25
SQSTM1-208ENST00000485412 CDK11AQ9UQ88 783 aaPredicted RBP22.88■■□□□ 1.25
SQSTM1-208ENST00000485412 TROQ12816 1431 aaPredicted RBP22.88■■□□□ 1.25
SQSTM1-208ENST00000485412 CDC42BPBQ9Y5S2 1711 aa22.88■■□□□ 1.25
SQSTM1-208ENST00000485412 ARHGAP5Q13017 1502 aa22.84■■□□□ 1.25
SQSTM1-208ENST00000485412 ZNF518AQ6AHZ1 1483 aa22.84■■□□□ 1.25
SQSTM1-208ENST00000485412 MYT1LQ9UL68 1186 aa22.83■■□□□ 1.25
SQSTM1-208ENST00000485412 KDM5CP41229 1560 aa22.81■■□□□ 1.24
SQSTM1-208ENST00000485412 CEBPAP49715 358 aaPredicted RBP22.81■■□□□ 1.24
SQSTM1-208ENST00000485412 PREX2Q70Z35 1606 aa22.8■■□□□ 1.24
SQSTM1-208ENST00000485412 CLIP1P30622 1438 aa22.8■■□□□ 1.24
SQSTM1-208ENST00000485412 SETD1BQ9UPS6 1966 aaKnown RBP22.78■■□□□ 1.24
SQSTM1-208ENST00000485412 CDC42BPAQ5VT25 1732 aa22.77■■□□□ 1.24
SQSTM1-208ENST00000485412 DIP2CQ9Y2E4 1556 aa22.77■■□□□ 1.24
SQSTM1-208ENST00000485412 AFAP1Q8N556 730 aa22.77■■□□□ 1.24
SQSTM1-208ENST00000485412 ABCA6Q8N139 1617 aa22.77■■□□□ 1.24
SQSTM1-208ENST00000485412 UHRF1BP1Q6BDS2 1440 aa22.76■■□□□ 1.23
SQSTM1-208ENST00000485412 CASKIN1Q8WXD9 1431 aa22.76■■□□□ 1.23
SQSTM1-208ENST00000485412 STRCQ7RTU9 1775 aa22.76■■□□□ 1.23
SQSTM1-208ENST00000485412 ITSN2Q9NZM3 1697 aa22.75■■□□□ 1.23
SQSTM1-208ENST00000485412 DMRT2Q9Y5R5 561 aa22.75■■□□□ 1.23
SQSTM1-208ENST00000485412 ABCC1P33527 1531 aa22.74■■□□□ 1.23
SQSTM1-208ENST00000485412 CCDC18Q5T9S5 1454 aa22.73■■□□□ 1.23
SQSTM1-208ENST00000485412 REREQ9P2R6 1566 aa22.72■■□□□ 1.23
SQSTM1-208ENST00000485412 TRAPPC8Q9Y2L5 1435 aa22.72■■□□□ 1.23
SQSTM1-208ENST00000485412 C3P01024 1663 aa22.71■■□□□ 1.23
SQSTM1-208ENST00000485412 ESF1Q9H501 851 aaKnown RBP22.69■■□□□ 1.22
SQSTM1-208ENST00000485412 FYCO1Q9BQS8 1478 aa22.68■■□□□ 1.22
SQSTM1-208ENST00000485412 MLH3Q9UHC1 1453 aa22.68■■□□□ 1.22
SQSTM1-208ENST00000485412 KIDINS220Q9ULH0 1771 aa22.68■■□□□ 1.22
SQSTM1-208ENST00000485412 SAMD9LQ8IVG5 1584 aa22.64■■□□□ 1.22
SQSTM1-208ENST00000485412 AGLP35573 1532 aa22.64■■□□□ 1.21
SQSTM1-208ENST00000485412 DISP3Q9P2K9 1392 aa22.62■■□□□ 1.21
SQSTM1-208ENST00000485412 PTPRTO14522 1441 aa22.61■■□□□ 1.21
SQSTM1-208ENST00000485412 SYCP2Q9BX26 1530 aa22.6■■□□□ 1.21
SQSTM1-208ENST00000485412 CNTLNQ9NXG0 1405 aa22.58■■□□□ 1.21
SQSTM1-208ENST00000485412 GPATCH8Q9UKJ3 1502 aaKnown RBP22.58■■□□□ 1.21
SQSTM1-208ENST00000485412 ZNF777Q9ULD5 760 aaPredicted RBP22.55■■□□□ 1.2
SQSTM1-208ENST00000485412 SUPT6HQ7KZ85 1726 aaKnown RBP22.54■■□□□ 1.2
SQSTM1-208ENST00000485412 MROH2AA6NES4 1674 aa22.53■■□□□ 1.2
SQSTM1-208ENST00000485412 NCOA1Q15788 1441 aa22.52■■□□□ 1.2
SQSTM1-208ENST00000485412 LTBP4Q8N2S1 1624 aa22.51■■□□□ 1.19
SQSTM1-208ENST00000485412 ILDR2Q71H61 639 aa22.51■■□□□ 1.19
SQSTM1-208ENST00000485412 SPATA31D1Q6ZQQ2 1576 aa22.5■■□□□ 1.19
SQSTM1-208ENST00000485412 INO80Q9ULG1 1556 aaPredicted RBP22.5■■□□□ 1.19
SQSTM1-208ENST00000485412 HNRNPMP52272 730 aaKnown RBP eCLIP22.5■■□□□ 1.191e-6■□□□□ 9.4
SQSTM1-208ENST00000485412 CAMSAP1Q5T5Y3 1602 aa22.49■■□□□ 1.19
SQSTM1-208ENST00000485412 ATP7AQ04656 1500 aa22.48■■□□□ 1.19
SQSTM1-208ENST00000485412 SPAG9O60271 1321 aaKnown RBP22.48■■□□□ 1.19
SQSTM1-208ENST00000485412 NPATQ14207 1427 aa22.48■■□□□ 1.19
SQSTM1-208ENST00000485412 IQSEC2Q5JU85 1478 aa22.47■■□□□ 1.19
SQSTM1-208ENST00000485412 TIAM1Q13009 1591 aa22.47■■□□□ 1.19
SQSTM1-208ENST00000485412 PLXNC1O60486 1568 aa22.46■■□□□ 1.19
SQSTM1-208ENST00000485412 CLTCQ00610 1675 aaKnown RBP22.46■■□□□ 1.19
SQSTM1-208ENST00000485412 SOCS7O14512 581 aa22.45■■□□□ 1.18
SQSTM1-208ENST00000485412 ZMYM3Q14202 1370 aa22.45■■□□□ 1.18
SQSTM1-208ENST00000485412 MTUS2Q5JR59 1369 aa22.43■■□□□ 1.18
SQSTM1-208ENST00000485412 CCNB3Q8WWL7 1395 aa22.43■■□□□ 1.18
SQSTM1-208ENST00000485412 CFDP1Q9UEE9 299 aaPredicted RBP22.42■■□□□ 1.18
SQSTM1-208ENST00000485412 KIAA1107Q9UPP5 1409 aa22.41■■□□□ 1.18
SQSTM1-208ENST00000485412 ZNF644Q9H582 1327 aaPredicted RBP22.41■■□□□ 1.18
SQSTM1-208ENST00000485412 MYO3AQ8NEV4 1616 aa22.41■■□□□ 1.18
SQSTM1-208ENST00000485412 PLEKHH2Q8IVE3 1493 aa22.41■■□□□ 1.18
SQSTM1-208ENST00000485412 ZNF142P52746 1687 aaPredicted RBP22.4■■□□□ 1.18
SQSTM1-208ENST00000485412 EHBP1L1Q8N3D4 1523 aa22.4■■□□□ 1.18
SQSTM1-208ENST00000485412 NCKAP5LQ9HCH0 1330 aa22.39■■□□□ 1.18
SQSTM1-208ENST00000485412 A2MP01023 1474 aa22.39■■□□□ 1.17
SQSTM1-208ENST00000485412 CEP162Q5TB80 1403 aa22.39■■□□□ 1.17
SQSTM1-208ENST00000485412 ADGBQ8N7X0 1667 aa22.37■■□□□ 1.17
SQSTM1-208ENST00000485412 CEP170BQ9Y4F5 1589 aaPredicted RBP22.36■■□□□ 1.17
SQSTM1-208ENST00000485412 MBD5Q9P267 1494 aa22.35■■□□□ 1.17
SQSTM1-208ENST00000485412 GGT6Q6P531 493 aa22.35■■□□□ 1.17
SQSTM1-208ENST00000485412 PLA2R1Q13018 1463 aa22.34■■□□□ 1.17
SQSTM1-208ENST00000485412 ZNF335Q9H4Z2 1342 aaPredicted RBP22.34■■□□□ 1.17
SQSTM1-208ENST00000485412 PKD2Q13563 968 aa22.34■■□□□ 1.17
SQSTM1-208ENST00000485412 PTPRKQ15262 1439 aa22.33■■□□□ 1.17
SQSTM1-208ENST00000485412 UBAP1LF5GYI3 381 aa22.32■■□□□ 1.16
SQSTM1-208ENST00000485412 TCOF1Q13428 1488 aaKnown RBP22.29■■□□□ 1.16
SQSTM1-208ENST00000485412 NCOA2Q15596 1464 aa22.28■■□□□ 1.16
SQSTM1-208ENST00000485412 PPP6R1Q9UPN7 881 aa22.27■■□□□ 1.16
SQSTM1-208ENST00000485412 CAMSAP2Q08AD1 1489 aa22.26■■□□□ 1.15
SQSTM1-208ENST00000485412 A2ML1A8K2U0 1454 aa22.24■■□□□ 1.15
SQSTM1-208ENST00000485412 DNMT1P26358 1616 aaKnown RBP22.23■■□□□ 1.15
SQSTM1-208ENST00000485412 POLR1AO95602 1720 aaPredicted RBP22.22■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms