RNA–Protein interactions for RNA: ENST00000484855.2

CTSA-207, Transcript of cathepsin A, humanhuman

TSL 1 (best)

Gene CTSA, Length 2,183 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-207ENST00000484855 ZNF644Q9H582 1327 aaPredicted RBP24.62■■□□□ 1.53
CTSA-207ENST00000484855 CROCC2H7BZ55 1655 aa24.6■■□□□ 1.53
CTSA-207ENST00000484855 KDM5BQ9UGL1 1544 aa24.6■■□□□ 1.53
CTSA-207ENST00000484855 CHIC2Q9UKJ5 165 aa24.6■■□□□ 1.53
CTSA-207ENST00000484855 ABCC5O15440 1437 aa24.59■■□□□ 1.53
CTSA-207ENST00000484855 PREX2Q70Z35 1606 aa24.59■■□□□ 1.53
CTSA-207ENST00000484855 CDC42BPBQ9Y5S2 1711 aa24.57■■□□□ 1.52
CTSA-207ENST00000484855 ADGBQ8N7X0 1667 aa24.57■■□□□ 1.52
CTSA-207ENST00000484855 TTC37Q6PGP7 1564 aa24.56■■□□□ 1.52
CTSA-207ENST00000484855 RRP7BPQ9NSQ0 103 aa24.56■■□□□ 1.52
CTSA-207ENST00000484855 ZNF777Q9ULD5 760 aaPredicted RBP24.55■■□□□ 1.52
CTSA-207ENST00000484855 ROCK1Q13464 1354 aa24.54■■□□□ 1.52
CTSA-207ENST00000484855 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.53■■□□□ 1.52
CTSA-207ENST00000484855 MYO5CQ9NQX4 1742 aa24.53■■□□□ 1.52
CTSA-207ENST00000484855 KDM6BO15054 1643 aa24.51■■□□□ 1.51
CTSA-207ENST00000484855 SAMD9LQ8IVG5 1584 aa24.47■■□□□ 1.51
CTSA-207ENST00000484855 ARHGEF5Q12774 1597 aa24.45■■□□□ 1.5
CTSA-207ENST00000484855 ADGRL2O95490 1459 aa24.44■■□□□ 1.5
CTSA-207ENST00000484855 ARHGAP5Q13017 1502 aa24.44■■□□□ 1.5
CTSA-207ENST00000484855 SHANK2Q9UPX8 1470 aa24.44■■□□□ 1.5
CTSA-207ENST00000484855 KCNH8Q96L42 1107 aa24.42■■□□□ 1.5
CTSA-207ENST00000484855 NCOA1Q15788 1441 aa24.39■■□□□ 1.49
CTSA-207ENST00000484855 WDR7Q9Y4E6 1490 aa24.39■■□□□ 1.49
CTSA-207ENST00000484855 C9orf84Q5VXU9 1444 aa24.37■■□□□ 1.49
CTSA-207ENST00000484855 ANKRD30AQ9BXX3 1397 aa24.37■■□□□ 1.49
CTSA-207ENST00000484855 MBD5Q9P267 1494 aa24.37■■□□□ 1.49
CTSA-207ENST00000484855 SYCP2Q9BX26 1530 aa24.36■■□□□ 1.49
CTSA-207ENST00000484855 CCDC141Q6ZP82 1450 aa24.36■■□□□ 1.49
CTSA-207ENST00000484855 ACIN1Q9UKV3 1341 aaKnown RBP24.35■■□□□ 1.49
CTSA-207ENST00000484855 TRIM52Q96A61 297 aa24.35■■□□□ 1.49
CTSA-207ENST00000484855 HNRNPMP52272 730 aaKnown RBP eCLIP24.33■■□□□ 1.49
CTSA-207ENST00000484855 PLCH2O75038 1416 aa24.33■■□□□ 1.49
CTSA-207ENST00000484855 PLEKHH2Q8IVE3 1493 aa24.33■■□□□ 1.49
CTSA-207ENST00000484855 SIN3AQ96ST3 1273 aa24.33■■□□□ 1.48
CTSA-207ENST00000484855 TSPY4P0CV99 314 aa24.31■■□□□ 1.48
CTSA-207ENST00000484855 TSPY10P0CW01 314 aa24.31■■□□□ 1.48
CTSA-207ENST00000484855 NEUROD1Q13562 356 aa24.3■■□□□ 1.48
CTSA-207ENST00000484855 ABCA9Q8IUA7 1624 aa24.29■■□□□ 1.48
CTSA-207ENST00000484855 ARAP3Q8WWN8 1544 aa24.29■■□□□ 1.48
CTSA-207ENST00000484855 ASXL2Q76L83 1435 aa24.29■■□□□ 1.48
CTSA-207ENST00000484855 ZNF316A6NFI3 1004 aaPredicted RBP24.29■■□□□ 1.48
CTSA-207ENST00000484855 RSPH4AQ5TD94 716 aa24.29■■□□□ 1.48
CTSA-207ENST00000484855 DENND4BO75064 1496 aaPredicted RBP24.28■■□□□ 1.48
CTSA-207ENST00000484855 KIAA1107Q9UPP5 1409 aa24.28■■□□□ 1.48
CTSA-207ENST00000484855 MAST1Q9Y2H9 1570 aa24.28■■□□□ 1.48
CTSA-207ENST00000484855 ABCC1P33527 1531 aa24.26■■□□□ 1.47
CTSA-207ENST00000484855 ANKRD50Q9ULJ7 1429 aa24.25■■□□□ 1.47
CTSA-207ENST00000484855 NPM1P06748 294 aaKnown RBP eCLIP24.24■■□□□ 1.47
CTSA-207ENST00000484855 MPHOSPH9Q99550 1183 aa24.24■■□□□ 1.47
CTSA-207ENST00000484855 TIMELESSQ9UNS1 1208 aa24.24■■□□□ 1.47
CTSA-207ENST00000484855 EFCAB2Q5VUJ9 269 aa24.23■■□□□ 1.47
CTSA-207ENST00000484855 KIF15Q9NS87 1388 aa24.22■■□□□ 1.47
CTSA-207ENST00000484855 ARHGEF12Q9NZN5 1544 aa24.21■■□□□ 1.47
CTSA-207ENST00000484855 PLXNC1O60486 1568 aa24.19■■□□□ 1.46
CTSA-207ENST00000484855 PZPP20742 1482 aa24.18■■□□□ 1.46
CTSA-207ENST00000484855 TONSLQ96HA7 1378 aa24.17■■□□□ 1.46
CTSA-207ENST00000484855 RIMBP3CA6NJZ7 1639 aa24.17■■□□□ 1.46
CTSA-207ENST00000484855 RIMBP3BA6NNM3 1639 aa24.17■■□□□ 1.46
CTSA-207ENST00000484855 RIMBP3Q9UFD9 1639 aa24.17■■□□□ 1.46
CTSA-207ENST00000484855 SLC4A1APQ9BWU0 796 aaKnown RBP24.15■■□□□ 1.46
CTSA-207ENST00000484855 FANCAO15360 1455 aa24.14■■□□□ 1.45
CTSA-207ENST00000484855 KDM5DQ9BY66 1539 aa24.12■■□□□ 1.45
CTSA-207ENST00000484855 TRAPPC8Q9Y2L5 1435 aa24.11■■□□□ 1.45
CTSA-207ENST00000484855 DIEXFQ68CQ4 756 aaKnown RBP24.11■■□□□ 1.45
CTSA-207ENST00000484855 FOXD1Q16676 465 aa24.1■■□□□ 1.45
CTSA-207ENST00000484855 ANKRD30BQ9BXX2 1392 aa24.08■■□□□ 1.45
CTSA-207ENST00000484855 PPP1R15AO75807 674 aaPredicted RBP24.07■■□□□ 1.44
CTSA-207ENST00000484855 DUOX2Q9NRD8 1548 aa24.07■■□□□ 1.44
CTSA-207ENST00000484855 CFAP74Q9C0B2 1584 aa24.06■■□□□ 1.44
CTSA-207ENST00000484855 NUP155O75694 1391 aa24.06■■□□□ 1.44
CTSA-207ENST00000484855 UNC13BO14795 1591 aa24.05■■□□□ 1.44
CTSA-207ENST00000484855 ADGRL1O94910 1474 aa24.05■■□□□ 1.44
CTSA-207ENST00000484855 ZFYVE16Q7Z3T8 1539 aa24.04■■□□□ 1.44
CTSA-207ENST00000484855 CYB5RLQ6IPT4 315 aa24.02■■□□□ 1.44
CTSA-207ENST00000484855 RPRD2Q5VT52 1461 aaKnown RBP24.02■■□□□ 1.44
CTSA-207ENST00000484855 RTEL1-TNFRSF6BF6WH68 1400 aa24.02■■□□□ 1.44
CTSA-207ENST00000484855 INO80Q9ULG1 1556 aaPredicted RBP24.01■■□□□ 1.43
CTSA-207ENST00000484855 ERBINQ96RT1 1412 aa24.01■■□□□ 1.43
CTSA-207ENST00000484855 CD109Q6YHK3 1445 aa24.01■■□□□ 1.43
CTSA-207ENST00000484855 SPAG9O60271 1321 aaKnown RBP24■■□□□ 1.43
CTSA-207ENST00000484855 PKD2Q13563 968 aa23.99■■□□□ 1.43
CTSA-207ENST00000484855 FAM135AQ9P2D6 1515 aa23.99■■□□□ 1.43
CTSA-207ENST00000484855 SCAPERQ9BY12 1400 aa23.99■■□□□ 1.43
CTSA-207ENST00000484855 AFAP1Q8N556 730 aa23.98■■□□□ 1.43
CTSA-207ENST00000484855 ATP7AQ04656 1500 aa23.98■■□□□ 1.43
CTSA-207ENST00000484855 IQGAP3Q86VI3 1631 aa23.96■■□□□ 1.43
CTSA-207ENST00000484855 MAGI2Q86UL8 1455 aa23.93■■□□□ 1.42
CTSA-207ENST00000484855 TEX14Q8IWB6 1497 aa23.92■■□□□ 1.42
CTSA-207ENST00000484855 MAP3K4Q9Y6R4 1608 aa23.91■■□□□ 1.42
CTSA-207ENST00000484855 ZNF518AQ6AHZ1 1483 aa23.91■■□□□ 1.42
CTSA-207ENST00000484855 KIDINS220Q9ULH0 1771 aa23.89■■□□□ 1.41
CTSA-207ENST00000484855 L3MBTL2Q969R5 705 aa23.88■■□□□ 1.41
CTSA-207ENST00000484855 GLI2P10070 1586 aa23.88■■□□□ 1.41
CTSA-207ENST00000484855 NEO1Q92859 1461 aa23.87■■□□□ 1.41
CTSA-207ENST00000484855 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.86■■□□□ 1.41
CTSA-207ENST00000484855 KDM5CP41229 1560 aa23.86■■□□□ 1.41
CTSA-207ENST00000484855 POGZQ7Z3K3 1410 aa23.86■■□□□ 1.41
CTSA-207ENST00000484855 DEPDC5O75140 1603 aa23.86■■□□□ 1.41
CTSA-207ENST00000484855 EIF2AK4Q9P2K8 1649 aaKnown RBP23.85■■□□□ 1.41
CTSA-207ENST00000484855 MYT1LQ9UL68 1186 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms