RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 NEO1Q92859 1461 aa8.49□□□□□ -1.05
COL17A1-206ENST00000483876 CARMIL1Q5VZK9 1371 aa8.48□□□□□ -1.05
COL17A1-206ENST00000483876 TRIM26Q12899 539 aaPredicted RBP8.48□□□□□ -1.05
COL17A1-206ENST00000483876 IFFO2Q5TF58 517 aa8.47□□□□□ -1.05
COL17A1-206ENST00000483876 DISP1Q96F81 1524 aa8.47□□□□□ -1.05
COL17A1-206ENST00000483876 SRCAPQ6ZRS2 3230 aa8.46□□□□□ -1.05
COL17A1-206ENST00000483876 ARHGEF12Q9NZN5 1544 aa8.45□□□□□ -1.06
COL17A1-206ENST00000483876 NCKAP5LQ9HCH0 1330 aa8.45□□□□□ -1.06
COL17A1-206ENST00000483876 CLIP1P30622 1438 aa8.45□□□□□ -1.06
COL17A1-206ENST00000483876 KIAA0556O60303 1618 aa8.44□□□□□ -1.06
COL17A1-206ENST00000483876 SIGLEC1Q9BZZ2 1709 aa8.44□□□□□ -1.06
COL17A1-206ENST00000483876 DENND4BO75064 1496 aaPredicted RBP8.44□□□□□ -1.06
COL17A1-206ENST00000483876 SETD1AO15047 1707 aaKnown RBP8.43□□□□□ -1.06
COL17A1-206ENST00000483876 IQGAP2Q13576 1575 aa8.43□□□□□ -1.06
COL17A1-206ENST00000483876 FHOD3Q2V2M9 1422 aa8.42□□□□□ -1.06
COL17A1-206ENST00000483876 ZFYVE16Q7Z3T8 1539 aa8.42□□□□□ -1.06
COL17A1-206ENST00000483876 CAMSAP1Q5T5Y3 1602 aa8.41□□□□□ -1.06
COL17A1-206ENST00000483876 EFCAB5A4FU69 1503 aa8.41□□□□□ -1.06
COL17A1-206ENST00000483876 PTPRKQ15262 1439 aa8.41□□□□□ -1.06
COL17A1-206ENST00000483876 PCGF6Q9BYE7 350 aa8.41□□□□□ -1.06
COL17A1-206ENST00000483876 TRAPPC8Q9Y2L5 1435 aa8.4□□□□□ -1.06
COL17A1-206ENST00000483876 PKD2Q13563 968 aa8.4□□□□□ -1.06
COL17A1-206ENST00000483876 ABCA9Q8IUA7 1624 aa8.4□□□□□ -1.07
COL17A1-206ENST00000483876 PPP6R1Q9UPN7 881 aa8.39□□□□□ -1.07
COL17A1-206ENST00000483876 SETD1BQ9UPS6 1966 aaKnown RBP8.39□□□□□ -1.07
COL17A1-206ENST00000483876 MAGI2Q86UL8 1455 aa8.38□□□□□ -1.07
COL17A1-206ENST00000483876 VPS8Q8N3P4 1428 aa8.38□□□□□ -1.07
COL17A1-206ENST00000483876 RICTORQ6R327 1708 aa8.37□□□□□ -1.07
COL17A1-206ENST00000483876 ARID3CA6NKF2 412 aa8.37□□□□□ -1.07
COL17A1-206ENST00000483876 CPS1P31327 1500 aa8.37□□□□□ -1.07
COL17A1-206ENST00000483876 ZMYM4Q5VZL5 1548 aa8.37□□□□□ -1.07
COL17A1-206ENST00000483876 ESF1Q9H501 851 aaKnown RBP8.36□□□□□ -1.07
COL17A1-206ENST00000483876 ATP10AO60312 1499 aa8.35□□□□□ -1.07
COL17A1-206ENST00000483876 APLP2Q06481 763 aa8.35□□□□□ -1.07
COL17A1-206ENST00000483876 ALKQ9UM73 1620 aa8.35□□□□□ -1.07
COL17A1-206ENST00000483876 C9orf84Q5VXU9 1444 aa8.35□□□□□ -1.07
COL17A1-206ENST00000483876 UGGT2Q9NYU1 1516 aa8.34□□□□□ -1.07
COL17A1-206ENST00000483876 TRIM52Q96A61 297 aa8.34□□□□□ -1.07
COL17A1-206ENST00000483876 ABCA8O94911 1581 aa8.34□□□□□ -1.07
COL17A1-206ENST00000483876 RBM33Q96EV2 1170 aaKnown RBP8.33□□□□□ -1.08
COL17A1-206ENST00000483876 PLA2R1Q13018 1463 aa8.32□□□□□ -1.08
COL17A1-206ENST00000483876 ARHGAP35Q9NRY4 1499 aa8.32□□□□□ -1.08
COL17A1-206ENST00000483876 C3P01024 1663 aa8.32□□□□□ -1.08
COL17A1-206ENST00000483876 HECW1Q76N89 1606 aa8.32□□□□□ -1.08
COL17A1-206ENST00000483876 TCOF1Q13428 1488 aaKnown RBP8.32□□□□□ -1.08
COL17A1-206ENST00000483876 SHANK2Q9UPX8 1470 aa8.32□□□□□ -1.08
COL17A1-206ENST00000483876 FOXD1Q16676 465 aa8.31□□□□□ -1.08
COL17A1-206ENST00000483876 ZRANB1Q9UGI0 708 aa8.31□□□□□ -1.08
COL17A1-206ENST00000483876 ATP10BO94823 1461 aa8.3□□□□□ -1.08
COL17A1-206ENST00000483876 MAP3K1Q13233 1512 aa8.29□□□□□ -1.08
COL17A1-206ENST00000483876 RANGAP1P46060 587 aaPredicted RBP8.29□□□□□ -1.08
COL17A1-206ENST00000483876 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.27□□□□□ -1.09
COL17A1-206ENST00000483876 HNRNPUL2Q1KMD3 747 aaKnown RBP8.27□□□□□ -1.09
COL17A1-206ENST00000483876 NPATQ14207 1427 aa8.27□□□□□ -1.09
COL17A1-206ENST00000483876 CFAP74Q9C0B2 1584 aa8.27□□□□□ -1.09
COL17A1-206ENST00000483876 PPARGC1BQ86YN6 1023 aaKnown RBP8.26□□□□□ -1.09
COL17A1-206ENST00000483876 FMN1Q68DA7 1419 aa8.26□□□□□ -1.09
COL17A1-206ENST00000483876 CTTNBP2Q8WZ74 1663 aa8.25□□□□□ -1.09
COL17A1-206ENST00000483876 HRCP23327 699 aa8.25□□□□□ -1.09
COL17A1-206ENST00000483876 SCAPERQ9BY12 1400 aa8.25□□□□□ -1.09
COL17A1-206ENST00000483876 SETBP1Q9Y6X0 1596 aa8.25□□□□□ -1.09
COL17A1-206ENST00000483876 LRRC7Q96NW7 1537 aa8.24□□□□□ -1.09
COL17A1-206ENST00000483876 CNTLNQ9NXG0 1405 aa8.24□□□□□ -1.09
COL17A1-206ENST00000483876 ZNF772Q68DY9 489 aaPredicted RBP8.24□□□□□ -1.09
COL17A1-206ENST00000483876 CASKIN1Q8WXD9 1431 aa8.23□□□□□ -1.09
COL17A1-206ENST00000483876 RXRBP28702 533 aa8.23□□□□□ -1.09
COL17A1-206ENST00000483876 MYT1LQ9UL68 1186 aa8.23□□□□□ -1.09
COL17A1-206ENST00000483876 SAMD9Q5K651 1589 aa8.22□□□□□ -1.09
COL17A1-206ENST00000483876 ZEB1P37275 1124 aaPredicted RBP8.22□□□□□ -1.09
COL17A1-206ENST00000483876 POTEDQ86YR6 584 aa8.22□□□□□ -1.09
COL17A1-206ENST00000483876 KANK4Q5T7N3 995 aaPredicted RBP8.21□□□□□ -1.1
COL17A1-206ENST00000483876 CEP170BQ9Y4F5 1589 aaPredicted RBP8.21□□□□□ -1.1
COL17A1-206ENST00000483876 RNF17Q9BXT8 1623 aaKnown RBP8.21□□□□□ -1.1
COL17A1-206ENST00000483876 ZMYM3Q14202 1370 aa8.21□□□□□ -1.1
COL17A1-206ENST00000483876 FYCO1Q9BQS8 1478 aa8.2□□□□□ -1.1
COL17A1-206ENST00000483876 AGLP35573 1532 aa8.2□□□□□ -1.1
COL17A1-206ENST00000483876 VWDEQ8N2E2 1590 aa8.2□□□□□ -1.1
COL17A1-206ENST00000483876 P3H3Q8IVL6 736 aa8.2□□□□□ -1.1
COL17A1-206ENST00000483876 ZNF142P52746 1687 aaPredicted RBP8.19□□□□□ -1.1
COL17A1-206ENST00000483876 YY1P25490 414 aa8.19□□□□□ -1.1
COL17A1-206ENST00000483876 FAM135BQ49AJ0 1406 aa8.19□□□□□ -1.1
COL17A1-206ENST00000483876 MYO3AQ8NEV4 1616 aa8.18□□□□□ -1.1
COL17A1-206ENST00000483876 SUPT6HQ7KZ85 1726 aaKnown RBP8.18□□□□□ -1.1
COL17A1-206ENST00000483876 PLEKHD1A6NEE1 506 aa8.18□□□□□ -1.1
COL17A1-206ENST00000483876 MEX3CQ5U5Q3 659 aaKnown RBP8.18□□□□□ -1.1
COL17A1-206ENST00000483876 CDK12Q9NYV4 1490 aaPredicted RBP8.18□□□□□ -1.1
COL17A1-206ENST00000483876 TIAM1Q13009 1591 aa8.18□□□□□ -1.1
COL17A1-206ENST00000483876 NUTM2BA6NNL0 878 aaPredicted RBP8.17□□□□□ -1.1
COL17A1-206ENST00000483876 NUTM2EB1AL46 878 aaPredicted RBP8.17□□□□□ -1.1
COL17A1-206ENST00000483876 NUTM2DQ5VT03 806 aaPredicted RBP8.17□□□□□ -1.1
COL17A1-206ENST00000483876 NUTM2AQ8IVF1 878 aaPredicted RBP8.17□□□□□ -1.1
COL17A1-206ENST00000483876 LRRC9Q6ZRR7 1453 aa8.17□□□□□ -1.1
COL17A1-206ENST00000483876 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.17□□□□□ -1.1
COL17A1-206ENST00000483876 NEURL4Q96JN8 1562 aa8.16□□□□□ -1.1
COL17A1-206ENST00000483876 RRBP1Q9P2E9 1410 aaKnown RBP8.16□□□□□ -1.1
COL17A1-206ENST00000483876 REREQ9P2R6 1566 aa8.16□□□□□ -1.1
COL17A1-206ENST00000483876 JCADQ9P266 1359 aa8.15□□□□□ -1.1
COL17A1-206ENST00000483876 SENP3-EIF4A1A0A087X0R7 540 aa8.15□□□□□ -1.1
COL17A1-206ENST00000483876 ANKLE2Q86XL3 938 aa8.15□□□□□ -1.1
COL17A1-206ENST00000483876 AFAP1Q8N556 730 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms