RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 FER1L4A9Z1Z3 1794 aa11.22□□□□□ -0.61
VCP-205ENST00000479300 FAM9AQ8IZU1 332 aaPredicted RBP11.22□□□□□ -0.61
VCP-205ENST00000479300 CERKQ8TCT0 537 aa11.22□□□□□ -0.61
VCP-205ENST00000479300 ARHGEF12Q9NZN5 1544 aa11.21□□□□□ -0.61
VCP-205ENST00000479300 MAGI2Q86UL8 1455 aa11.21□□□□□ -0.61
VCP-205ENST00000479300 POGZQ7Z3K3 1410 aa11.21□□□□□ -0.61
VCP-205ENST00000479300 MLECQ14165 292 aa11.2□□□□□ -0.62
VCP-205ENST00000479300 SCAPERQ9BY12 1400 aa11.19□□□□□ -0.62
VCP-205ENST00000479300 PLCH2O75038 1416 aa11.18□□□□□ -0.62
VCP-205ENST00000479300 STRCQ7RTU9 1775 aa11.18□□□□□ -0.62
VCP-205ENST00000479300 CEBPAP49715 358 aaPredicted RBP11.17□□□□□ -0.62
VCP-205ENST00000479300 ILDR2Q71H61 639 aa11.17□□□□□ -0.62
VCP-205ENST00000479300 ATP10AO60312 1499 aa11.17□□□□□ -0.62
VCP-205ENST00000479300 PREX1Q8TCU6 1659 aa11.17□□□□□ -0.62
VCP-205ENST00000479300 C9orf84Q5VXU9 1444 aa11.16□□□□□ -0.62
VCP-205ENST00000479300 KIF14Q15058 1648 aa11.16□□□□□ -0.62
VCP-205ENST00000479300 EEA1Q15075 1411 aa11.14□□□□□ -0.63
VCP-205ENST00000479300 MYO5CQ9NQX4 1742 aa11.13□□□□□ -0.63
VCP-205ENST00000479300 KDM5CP41229 1560 aa11.13□□□□□ -0.63
VCP-205ENST00000479300 DIP2CQ9Y2E4 1556 aa11.12□□□□□ -0.63
VCP-205ENST00000479300 AFAP1Q8N556 730 aa11.11□□□□□ -0.63
VCP-205ENST00000479300 LRRIQ1Q96JM4 1722 aa11.11□□□□□ -0.63
VCP-205ENST00000479300 ABCA6Q8N139 1617 aa11.1□□□□□ -0.63
VCP-205ENST00000479300 ARHGAP35Q9NRY4 1499 aa11.1□□□□□ -0.63
VCP-205ENST00000479300 C3P01024 1663 aa11.09□□□□□ -0.63
VCP-205ENST00000479300 REREQ9P2R6 1566 aa11.09□□□□□ -0.63
VCP-205ENST00000479300 ZNF518AQ6AHZ1 1483 aa11.09□□□□□ -0.63
VCP-205ENST00000479300 DISP3Q9P2K9 1392 aa11.09□□□□□ -0.63
VCP-205ENST00000479300 EFCAB2Q5VUJ9 269 aa11.09□□□□□ -0.63
VCP-205ENST00000479300 LTBP4Q8N2S1 1624 aa11.08□□□□□ -0.64
VCP-205ENST00000479300 TROQ12816 1431 aaPredicted RBP11.08□□□□□ -0.64
VCP-205ENST00000479300 UHRF1BP1Q6BDS2 1440 aa11.08□□□□□ -0.64
VCP-205ENST00000479300 CDC42BPBQ9Y5S2 1711 aa11.07□□□□□ -0.64
VCP-205ENST00000479300 ARHGAP5Q13017 1502 aa11.07□□□□□ -0.64
VCP-205ENST00000479300 SOCS7O14512 581 aa11.06□□□□□ -0.64
VCP-205ENST00000479300 KCNA4P22459 653 aa11.06□□□□□ -0.64
VCP-205ENST00000479300 PTPRTO14522 1441 aa11.06□□□□□ -0.64
VCP-205ENST00000479300 TRAPPC8Q9Y2L5 1435 aa11.06□□□□□ -0.64
VCP-205ENST00000479300 MLH3Q9UHC1 1453 aa11.06□□□□□ -0.64
VCP-205ENST00000479300 SETD1BQ9UPS6 1966 aaKnown RBP11.05□□□□□ -0.64
VCP-205ENST00000479300 FMN1Q68DA7 1419 aa11.05□□□□□ -0.64
VCP-205ENST00000479300 SPATA31D1Q6ZQQ2 1576 aa11.05□□□□□ -0.64
VCP-205ENST00000479300 EHMT2Q96KQ7 1210 aa11.05□□□□□ -0.64
VCP-205ENST00000479300 ABCC1P33527 1531 aa11.04□□□□□ -0.64
VCP-205ENST00000479300 AGLP35573 1532 aa11.04□□□□□ -0.64
VCP-205ENST00000479300 ATP1B4Q9UN42 357 aaPredicted RBP11.04□□□□□ -0.64
VCP-205ENST00000479300 DMRT2Q9Y5R5 561 aa11.04□□□□□ -0.64
VCP-205ENST00000479300 KIDINS220Q9ULH0 1771 aa11.03□□□□□ -0.64
VCP-205ENST00000479300 NCOA1Q15788 1441 aa11.03□□□□□ -0.64
VCP-205ENST00000479300 PREX2Q70Z35 1606 aa11.03□□□□□ -0.64
VCP-205ENST00000479300 ITSN2Q9NZM3 1697 aa11.03□□□□□ -0.64
VCP-205ENST00000479300 CDK11AQ9UQ88 783 aaPredicted RBP11□□□□□ -0.65
VCP-205ENST00000479300 CLIP1P30622 1438 aa11□□□□□ -0.65
VCP-205ENST00000479300 CDC42BPAQ5VT25 1732 aa10.99□□□□□ -0.65
VCP-205ENST00000479300 UBTFP17480 764 aaKnown RBP10.99□□□□□ -0.65
VCP-205ENST00000479300 IQSEC2Q5JU85 1478 aa10.99□□□□□ -0.65
VCP-205ENST00000479300 SAMD9LQ8IVG5 1584 aa10.99□□□□□ -0.65
VCP-205ENST00000479300 CAMSAP1Q5T5Y3 1602 aa10.98□□□□□ -0.65
VCP-205ENST00000479300 MYT1LQ9UL68 1186 aa10.98□□□□□ -0.65
VCP-205ENST00000479300 MROH2AA6NES4 1674 aa10.97□□□□□ -0.65
VCP-205ENST00000479300 CNTLNQ9NXG0 1405 aa10.96□□□□□ -0.65
VCP-205ENST00000479300 NPATQ14207 1427 aa10.95□□□□□ -0.66
VCP-205ENST00000479300 CASKIN1Q8WXD9 1431 aa10.95□□□□□ -0.66
VCP-205ENST00000479300 ZNF335Q9H4Z2 1342 aaPredicted RBP10.95□□□□□ -0.66
VCP-205ENST00000479300 NCKAP5LQ9HCH0 1330 aa10.95□□□□□ -0.66
VCP-205ENST00000479300 SYCP2Q9BX26 1530 aa10.94□□□□□ -0.66
VCP-205ENST00000479300 ZMYM3Q14202 1370 aa10.94□□□□□ -0.66
VCP-205ENST00000479300 ZNF142P52746 1687 aaPredicted RBP10.94□□□□□ -0.66
VCP-205ENST00000479300 MYO3AQ8NEV4 1616 aa10.94□□□□□ -0.66
VCP-205ENST00000479300 PLXNC1O60486 1568 aa10.94□□□□□ -0.66
VCP-205ENST00000479300 SUPT6HQ7KZ85 1726 aaKnown RBP10.93□□□□□ -0.66
VCP-205ENST00000479300 CLTCQ00610 1675 aaKnown RBP10.93□□□□□ -0.66
VCP-205ENST00000479300 INO80Q9ULG1 1556 aaPredicted RBP10.93□□□□□ -0.66
VCP-205ENST00000479300 GPATCH8Q9UKJ3 1502 aaKnown RBP10.93□□□□□ -0.66
VCP-205ENST00000479300 TCOF1Q13428 1488 aaKnown RBP10.93□□□□□ -0.66
VCP-205ENST00000479300 CCDC18Q5T9S5 1454 aa10.93□□□□□ -0.66
VCP-205ENST00000479300 PTPRKQ15262 1439 aa10.92□□□□□ -0.66
VCP-205ENST00000479300 ESF1Q9H501 851 aaKnown RBP10.92□□□□□ -0.66
VCP-205ENST00000479300 CEP170BQ9Y4F5 1589 aaPredicted RBP10.91□□□□□ -0.66
VCP-205ENST00000479300 ATP7AQ04656 1500 aa10.91□□□□□ -0.66
VCP-205ENST00000479300 PLA2R1Q13018 1463 aa10.91□□□□□ -0.66
VCP-205ENST00000479300 HNRNPMP52272 730 aaKnown RBP eCLIP10.9□□□□□ -0.66
VCP-205ENST00000479300 PIAS4Q8N2W9 510 aaPredicted RBP10.9□□□□□ -0.66
VCP-205ENST00000479300 SPAG9O60271 1321 aaKnown RBP10.89□□□□□ -0.67
VCP-205ENST00000479300 UBAP1LF5GYI3 381 aa10.89□□□□□ -0.67
VCP-205ENST00000479300 ZNF777Q9ULD5 760 aaPredicted RBP10.89□□□□□ -0.67
VCP-205ENST00000479300 A2MP01023 1474 aa10.88□□□□□ -0.67
VCP-205ENST00000479300 FYCO1Q9BQS8 1478 aa10.88□□□□□ -0.67
VCP-205ENST00000479300 KIAA1107Q9UPP5 1409 aa10.87□□□□□ -0.67
VCP-205ENST00000479300 NEURL4Q96JN8 1562 aa10.86□□□□□ -0.67
VCP-205ENST00000479300 PKD2Q13563 968 aa10.86□□□□□ -0.67
VCP-205ENST00000479300 DNMT1P26358 1616 aaKnown RBP10.86□□□□□ -0.67
VCP-205ENST00000479300 ZNF644Q9H582 1327 aaPredicted RBP10.84□□□□□ -0.67
VCP-205ENST00000479300 ALKQ9UM73 1620 aa10.84□□□□□ -0.67
VCP-205ENST00000479300 GGT6Q6P531 493 aa10.84□□□□□ -0.67
VCP-205ENST00000479300 A2ML1A8K2U0 1454 aa10.84□□□□□ -0.67
VCP-205ENST00000479300 MBD5Q9P267 1494 aa10.84□□□□□ -0.67
VCP-205ENST00000479300 MED1Q15648 1581 aaPredicted RBP10.84□□□□□ -0.67
VCP-205ENST00000479300 ADGBQ8N7X0 1667 aa10.83□□□□□ -0.68
VCP-205ENST00000479300 PLEKHH2Q8IVE3 1493 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms