RNA–Protein interactions for RNA: ENST00000478687.5

VRK2-209, Transcript of vaccinia related kinase 2, humanhuman

TSL 1 (best)

Gene VRK2, Length 1,021 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK2-209ENST00000478687 ATAD2BQ9ULI0 1458 aa10.85□□□□□ -0.67
VRK2-209ENST00000478687 NESP48681 1621 aa10.84□□□□□ -0.67
VRK2-209ENST00000478687 ERBB3P21860 1342 aa10.84□□□□□ -0.67
VRK2-209ENST00000478687 ZNF710Q8N1W2 664 aa10.83□□□□□ -0.68
VRK2-209ENST00000478687 RNF166Q96A37 237 aaPredicted RBP10.83□□□□□ -0.68
VRK2-209ENST00000478687 TMEM92Q6UXU6 159 aa10.82□□□□□ -0.68
VRK2-209ENST00000478687 G3V3G9 751 aa10.81□□□□□ -0.68
VRK2-209ENST00000478687 IFNLR1Q8IU57 520 aaPredicted RBP10.81□□□□□ -0.68
VRK2-209ENST00000478687 VARS2Q5ST30 1063 aaKnown RBP10.8□□□□□ -0.68
VRK2-209ENST00000478687 SPOCK2Q92563 424 aa10.79□□□□□ -0.68
VRK2-209ENST00000478687 HMGXB3Q12766 1538 aa10.79□□□□□ -0.68
VRK2-209ENST00000478687 SMARCA2P51531 1590 aa10.78□□□□□ -0.68
VRK2-209ENST00000478687 SMARCA4P51532 1647 aa10.78□□□□□ -0.68
VRK2-209ENST00000478687 ZSWIM6Q9HCJ5 1215 aa10.78□□□□□ -0.68
VRK2-209ENST00000478687 GPR153Q6NV75 609 aa10.77□□□□□ -0.69
VRK2-209ENST00000478687 ZNF687Q8N1G0 1237 aa10.77□□□□□ -0.69
VRK2-209ENST00000478687 EFCAB3Q8N7B9 438 aa10.77□□□□□ -0.69
VRK2-209ENST00000478687 MICALL2Q8IY33 904 aa10.76□□□□□ -0.69
VRK2-209ENST00000478687 MYT1LQ9UL68 1186 aa10.76□□□□□ -0.69
VRK2-209ENST00000478687 RIMBP2O15034 1052 aa10.75□□□□□ -0.69
VRK2-209ENST00000478687 CIZ1Q9ULV3 898 aaPredicted RBP10.74□□□□□ -0.69
VRK2-209ENST00000478687 BAZ1BQ9UIG0 1483 aaKnown RBP10.74□□□□□ -0.69
VRK2-209ENST00000478687 THOC2Q8NI27 1593 aaKnown RBP10.73□□□□□ -0.69
VRK2-209ENST00000478687 MS4A4AQ96JQ5 239 aa10.71□□□□□ -0.69
VRK2-209ENST00000478687 BAZ1AQ9NRL2 1556 aaPredicted RBP10.69□□□□□ -0.7
VRK2-209ENST00000478687 PTGER2P43116 358 aa10.68□□□□□ -0.7
VRK2-209ENST00000478687 TRIM41Q8WV44 630 aa10.68□□□□□ -0.7
VRK2-209ENST00000478687 LAMC3Q9Y6N6 1575 aa10.68□□□□□ -0.7
VRK2-209ENST00000478687 KIF21AQ7Z4S6 1674 aa10.66□□□□□ -0.7
VRK2-209ENST00000478687 PEG3Q9GZU2 1588 aa10.65□□□□□ -0.7
VRK2-209ENST00000478687 SOX12O15370 315 aa10.64□□□□□ -0.71
VRK2-209ENST00000478687 PDS5BQ9NTI5 1447 aa10.63□□□□□ -0.71
VRK2-209ENST00000478687 MROH2BQ7Z745 1585 aa10.62□□□□□ -0.71
VRK2-209ENST00000478687 RNF25Q96BH1 459 aaPredicted RBP10.61□□□□□ -0.71
VRK2-209ENST00000478687 ARSIQ5FYB1 569 aa10.6□□□□□ -0.71
VRK2-209ENST00000478687 PHF8Q9UPP1 1060 aa10.59□□□□□ -0.71
VRK2-209ENST00000478687 ZNF316A6NFI3 1004 aaPredicted RBP10.58□□□□□ -0.72
VRK2-209ENST00000478687 KHSRPQ92945 711 aaKnown RBP eCLIP10.57□□□□□ -0.72
VRK2-209ENST00000478687 CADPSQ9ULU8 1353 aa10.56□□□□□ -0.72
VRK2-209ENST00000478687 LSM11P83369 360 aaKnown RBP eCLIP10.56□□□□□ -0.72
VRK2-209ENST00000478687 MRC2Q9UBG0 1479 aa10.55□□□□□ -0.72
VRK2-209ENST00000478687 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.55□□□□□ -0.72
VRK2-209ENST00000478687 ZFP91Q96JP5 570 aaPredicted RBP10.55□□□□□ -0.72
VRK2-209ENST00000478687 RIOK3O14730 519 aaKnown RBP10.54□□□□□ -0.72
VRK2-209ENST00000478687 WDR62O43379 1518 aa10.53□□□□□ -0.72
VRK2-209ENST00000478687 POTEEQ6S8J3 1075 aa10.53□□□□□ -0.72
VRK2-209ENST00000478687 ANKRD13DQ6ZTN6 518 aa10.53□□□□□ -0.72
VRK2-209ENST00000478687 KIF3CO14782 793 aa10.52□□□□□ -0.73
VRK2-209ENST00000478687 FBXO22Q8NEZ5 403 aa10.52□□□□□ -0.73
VRK2-209ENST00000478687 VGFO15240 615 aaPredicted RBP10.5□□□□□ -0.73
VRK2-209ENST00000478687 WIZO95785 1651 aa10.49□□□□□ -0.73
VRK2-209ENST00000478687 PBX2P40425 430 aa10.48□□□□□ -0.73
VRK2-209ENST00000478687 CEP164Q9UPV0 1460 aa10.48□□□□□ -0.73
VRK2-209ENST00000478687 FANCD2Q9BXW9 1451 aa10.46□□□□□ -0.74
VRK2-209ENST00000478687 NLRP6P59044 892 aa10.44□□□□□ -0.74
VRK2-209ENST00000478687 SLC34A2O95436 690 aa10.43□□□□□ -0.74
VRK2-209ENST00000478687 C2orf72A6NCS6 295 aa10.42□□□□□ -0.74
VRK2-209ENST00000478687 NUDT7P0C024 238 aa10.42□□□□□ -0.74
VRK2-209ENST00000478687 MFRPQ9BY79 579 aa10.41□□□□□ -0.74
VRK2-209ENST00000478687 LHX6Q9UPM6 363 aa10.41□□□□□ -0.74
VRK2-209ENST00000478687 PLA2G2EQ9NZK7 142 aa10.4□□□□□ -0.74
VRK2-209ENST00000478687 AXIN2Q9Y2T1 843 aa10.4□□□□□ -0.74
VRK2-209ENST00000478687 CFTRP13569 1480 aa10.4□□□□□ -0.74
VRK2-209ENST00000478687 URB2Q14146 1524 aaKnown RBP10.38□□□□□ -0.75
VRK2-209ENST00000478687 PCDHGA4Q9Y5G9 962 aa10.38□□□□□ -0.75
VRK2-209ENST00000478687 HCSTQ9UBK5 93 aa10.37□□□□□ -0.75
VRK2-209ENST00000478687 KDM4FA0A1W2PPD8 638 aa10.36□□□□□ -0.75
VRK2-209ENST00000478687 BCL11BQ9C0K0 894 aaPredicted RBP10.36□□□□□ -0.75
VRK2-209ENST00000478687 RIMBP3CA6NJZ7 1639 aa10.34□□□□□ -0.75
VRK2-209ENST00000478687 RIMBP3BA6NNM3 1639 aa10.34□□□□□ -0.75
VRK2-209ENST00000478687 RIMBP3Q9UFD9 1639 aa10.34□□□□□ -0.75
VRK2-209ENST00000478687 ADGRD1Q6QNK2 874 aa10.34□□□□□ -0.75
VRK2-209ENST00000478687 RSF1Q96T23 1441 aaPredicted RBP10.33□□□□□ -0.76
VRK2-209ENST00000478687 HRO43593 1189 aa10.32□□□□□ -0.76
VRK2-209ENST00000478687 TOP2AP11388 1531 aaKnown RBP10.32□□□□□ -0.76
VRK2-209ENST00000478687 ARHGAP33O14559 1287 aa10.31□□□□□ -0.76
VRK2-209ENST00000478687 ZNF608Q9ULD9 1512 aaPredicted RBP10.31□□□□□ -0.76
VRK2-209ENST00000478687 ARHGEF11O15085 1522 aa10.29□□□□□ -0.76
VRK2-209ENST00000478687 TK2O00142 265 aa10.29□□□□□ -0.76
VRK2-209ENST00000478687 STK24Q9Y6E0 443 aa10.28□□□□□ -0.76
VRK2-209ENST00000478687 IFT140Q96RY7 1462 aa10.27□□□□□ -0.77
VRK2-209ENST00000478687 PSDA5PKW4 1024 aaPredicted RBP10.26□□□□□ -0.77
VRK2-209ENST00000478687 DMRTA1Q5VZB9 504 aa10.25□□□□□ -0.77
VRK2-209ENST00000478687 CYB5RLQ6IPT4 315 aa10.25□□□□□ -0.77
VRK2-209ENST00000478687 PRDM2Q13029 1718 aa10.24□□□□□ -0.77
VRK2-209ENST00000478687 TAOK2Q9UL54 1235 aa10.24□□□□□ -0.77
VRK2-209ENST00000478687 TOPBP1Q92547 1522 aa10.23□□□□□ -0.77
VRK2-209ENST00000478687 PTCD2Q8WV60 388 aaKnown RBP10.23□□□□□ -0.77
VRK2-209ENST00000478687 EIF4G3O43432 1585 aaKnown RBP10.22□□□□□ -0.77
VRK2-209ENST00000478687 TMC2Q8TDI7 906 aa10.22□□□□□ -0.77
VRK2-209ENST00000478687 CCDC88BA6NC98 1476 aa10.22□□□□□ -0.77
VRK2-209ENST00000478687 PSEN2P49810 448 aa10.21□□□□□ -0.77
VRK2-209ENST00000478687 STK25O00506 426 aa10.2□□□□□ -0.78
VRK2-209ENST00000478687 AQRO60306 1485 aaKnown RBP eCLIP10.18□□□□□ -0.78
VRK2-209ENST00000478687 PPP1R37O75864 691 aa10.18□□□□□ -0.78
VRK2-209ENST00000478687 CHD1O14646 1710 aa10.18□□□□□ -0.78
VRK2-209ENST00000478687 ARAP1Q96P48 1450 aa10.17□□□□□ -0.78
VRK2-209ENST00000478687 DNMBPQ6XZF7 1577 aa10.17□□□□□ -0.78
VRK2-209ENST00000478687 ABCC8Q09428 1581 aa10.16□□□□□ -0.78
VRK2-209ENST00000478687 TARBP1Q13395 1621 aaKnown RBP10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms