RNA–Protein interactions for RNA: ENST00000477605.1

CCM2-209, Transcript of CCM2 scaffold protein, humanhuman

TSL 1 (best)

Gene CCM2, Length 2,050 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-209ENST00000477605 JPH4Q96JJ6 628 aa25.33■■□□□ 1.65
CCM2-209ENST00000477605 KIAA0586Q9BVV6 1533 aa25.33■■□□□ 1.64
CCM2-209ENST00000477605 CDK13Q14004 1512 aaKnown RBP25.32■■□□□ 1.64
CCM2-209ENST00000477605 CHIC2Q9UKJ5 165 aa25.3■■□□□ 1.64
CCM2-209ENST00000477605 TRIM52Q96A61 297 aa25.3■■□□□ 1.64
CCM2-209ENST00000477605 MPHOSPH9Q99550 1183 aa25.3■■□□□ 1.64
CCM2-209ENST00000477605 TSHZ2Q9NRE2 1034 aa25.29■■□□□ 1.64
CCM2-209ENST00000477605 PRG4Q92954 1404 aaPredicted RBP25.29■■□□□ 1.64
CCM2-209ENST00000477605 NEFLP07196 543 aa25.28■■□□□ 1.64
CCM2-209ENST00000477605 FKBP8Q14318 412 aa25.26■■□□□ 1.63
CCM2-209ENST00000477605 DAPK1P53355 1430 aa25.25■■□□□ 1.63
CCM2-209ENST00000477605 KIAA0556O60303 1618 aa25.24■■□□□ 1.63
CCM2-209ENST00000477605 EIF4G2P78344 907 aaKnown RBP eCLIP25.24■■□□□ 1.63
CCM2-209ENST00000477605 HSPA5P11021 654 aaKnown RBP25.24■■□□□ 1.63
CCM2-209ENST00000477605 CDK11AQ9UQ88 783 aaPredicted RBP25.24■■□□□ 1.63
CCM2-209ENST00000477605 DISP1Q96F81 1524 aa25.23■■□□□ 1.63
CCM2-209ENST00000477605 KDM6BO15054 1643 aa25.23■■□□□ 1.63
CCM2-209ENST00000477605 DNMT1P26358 1616 aaKnown RBP25.21■■□□□ 1.63
CCM2-209ENST00000477605 WASHC2AQ641Q2 1341 aa25.19■■□□□ 1.62
CCM2-209ENST00000477605 ABCC5O15440 1437 aa25.19■■□□□ 1.62
CCM2-209ENST00000477605 NUP153P49790 1475 aaKnown RBP25.19■■□□□ 1.62
CCM2-209ENST00000477605 ANKRD30BQ9BXX2 1392 aa25.18■■□□□ 1.62
CCM2-209ENST00000477605 RPRD2Q5VT52 1461 aaKnown RBP25.17■■□□□ 1.62
CCM2-209ENST00000477605 L3MBTL2Q969R5 705 aa25.16■■□□□ 1.62
CCM2-209ENST00000477605 RAPGEF6Q8TEU7 1601 aa25.16■■□□□ 1.62
CCM2-209ENST00000477605 CNTLNQ9NXG0 1405 aa25.13■■□□□ 1.61
CCM2-209ENST00000477605 TRHP20396 242 aaPredicted RBP25.12■■□□□ 1.61
CCM2-209ENST00000477605 NCOA1Q15788 1441 aa25.11■■□□□ 1.61
CCM2-209ENST00000477605 TROQ12816 1431 aaPredicted RBP25.1■■□□□ 1.61
CCM2-209ENST00000477605 BCANQ96GW7 911 aa25.08■■□□□ 1.61
CCM2-209ENST00000477605 TEX14Q8IWB6 1497 aa25.08■■□□□ 1.61
CCM2-209ENST00000477605 CCDC7Q96M83 1385 aa25.06■■□□□ 1.6
CCM2-209ENST00000477605 ARID3CA6NKF2 412 aa25.05■■□□□ 1.6
CCM2-209ENST00000477605 SLC4A1APQ9BWU0 796 aaKnown RBP25.03■■□□□ 1.6
CCM2-209ENST00000477605 HNRNPUQ00839 825 aaKnown RBP eCLIP25.03■■□□□ 1.6
CCM2-209ENST00000477605 ADGRL2O95490 1459 aa25.02■■□□□ 1.6
CCM2-209ENST00000477605 ITSN2Q9NZM3 1697 aa25.02■■□□□ 1.6
CCM2-209ENST00000477605 ZNF644Q9H582 1327 aaPredicted RBP25.02■■□□□ 1.6
CCM2-209ENST00000477605 SPATA31E1Q6ZUB1 1445 aa25.01■■□□□ 1.59
CCM2-209ENST00000477605 FOXD1Q16676 465 aa25.01■■□□□ 1.59
CCM2-209ENST00000477605 CAMSAP2Q08AD1 1489 aa25■■□□□ 1.59
CCM2-209ENST00000477605 ADCY10Q96PN6 1610 aa25■■□□□ 1.59
CCM2-209ENST00000477605 ERICH6BQ5W0A0 696 aa25■■□□□ 1.59
CCM2-209ENST00000477605 CARMIL2Q6F5E8 1435 aa24.99■■□□□ 1.59
CCM2-209ENST00000477605 CFDP1Q9UEE9 299 aaPredicted RBP24.99■■□□□ 1.59
CCM2-209ENST00000477605 NBPF8Q3BBV2 869 aa24.98■■□□□ 1.59
CCM2-209ENST00000477605 GPATCH8Q9UKJ3 1502 aaKnown RBP24.98■■□□□ 1.59
CCM2-209ENST00000477605 PZPP20742 1482 aa24.98■■□□□ 1.59
CCM2-209ENST00000477605 PRKRIP1Q9H875 184 aaPredicted RBP24.97■■□□□ 1.59
CCM2-209ENST00000477605 ADGBQ8N7X0 1667 aa24.96■■□□□ 1.59
CCM2-209ENST00000477605 PTPRGP23470 1445 aa24.95■■□□□ 1.59
CCM2-209ENST00000477605 C11orf95C9JLR9 678 aaPredicted RBP24.94■■□□□ 1.58
CCM2-209ENST00000477605 KIAA1107Q9UPP5 1409 aa24.93■■□□□ 1.58
CCM2-209ENST00000477605 ANKRD30AQ9BXX3 1397 aa24.92■■□□□ 1.58
CCM2-209ENST00000477605 MBD5Q9P267 1494 aa24.91■■□□□ 1.58
CCM2-209ENST00000477605 PLB1Q6P1J6 1458 aa24.9■■□□□ 1.58
CCM2-209ENST00000477605 POLR1AO95602 1720 aaPredicted RBP24.9■■□□□ 1.58
CCM2-209ENST00000477605 KIF7Q2M1P5 1343 aa24.89■■□□□ 1.58
CCM2-209ENST00000477605 CROCC2H7BZ55 1655 aa24.88■■□□□ 1.57
CCM2-209ENST00000477605 ARID4BQ4LE39 1312 aaPredicted RBP24.88■■□□□ 1.57
CCM2-209ENST00000477605 SHANK2Q9UPX8 1470 aa24.86■■□□□ 1.57
CCM2-209ENST00000477605 NPM1P06748 294 aaKnown RBP eCLIP24.86■■□□□ 1.57
CCM2-209ENST00000477605 ANP32EQ9BTT0 268 aa24.85■■□□□ 1.57
CCM2-209ENST00000477605 ZBED9Q6R2W3 1325 aa24.84■■□□□ 1.57
CCM2-209ENST00000477605 KIF14Q15058 1648 aa24.83■■□□□ 1.57
CCM2-209ENST00000477605 RBM19Q9Y4C8 960 aaKnown RBP24.83■■□□□ 1.57
CCM2-209ENST00000477605 MRS2Q9HD23 443 aa24.82■■□□□ 1.56
CCM2-209ENST00000477605 ANKRD50Q9ULJ7 1429 aa24.82■■□□□ 1.56
CCM2-209ENST00000477605 PLEKHD1A6NEE1 506 aa24.81■■□□□ 1.56
CCM2-209ENST00000477605 CCDC184Q52MB2 194 aa24.81■■□□□ 1.56
CCM2-209ENST00000477605 ABCA8O94911 1581 aa24.8■■□□□ 1.56
CCM2-209ENST00000477605 UHRF1BP1Q6BDS2 1440 aa24.8■■□□□ 1.56
CCM2-209ENST00000477605 ABCC10Q5T3U5 1492 aa24.79■■□□□ 1.56
CCM2-209ENST00000477605 PKD2Q13563 968 aa24.79■■□□□ 1.56
CCM2-209ENST00000477605 ZNF777Q9ULD5 760 aaPredicted RBP24.77■■□□□ 1.56
CCM2-209ENST00000477605 UHRF1BP1LA0JNW5 1464 aa24.77■■□□□ 1.56
CCM2-209ENST00000477605 KDM5DQ9BY66 1539 aa24.77■■□□□ 1.56
CCM2-209ENST00000477605 ABCC2Q92887 1545 aa24.76■■□□□ 1.55
CCM2-209ENST00000477605 KIF13AQ9H1H9 1805 aa24.76■■□□□ 1.55
CCM2-209ENST00000477605 USP47Q96K76 1375 aa24.75■■□□□ 1.55
CCM2-209ENST00000477605 ARHGEF12Q9NZN5 1544 aa24.75■■□□□ 1.55
CCM2-209ENST00000477605 PPP4R2Q9NY27 417 aa24.74■■□□□ 1.55
CCM2-209ENST00000477605 ROCK2O75116 1388 aaKnown RBP24.74■■□□□ 1.55
CCM2-209ENST00000477605 ATP10BO94823 1461 aa24.74■■□□□ 1.55
CCM2-209ENST00000477605 C9orf84Q5VXU9 1444 aa24.73■■□□□ 1.55
CCM2-209ENST00000477605 FAM9BQ8IZU0 186 aa24.73■■□□□ 1.55
CCM2-209ENST00000477605 DHX29Q7Z478 1369 aaKnown RBP24.73■■□□□ 1.55
CCM2-209ENST00000477605 RALGAPBQ86X10 1494 aa24.71■■□□□ 1.55
CCM2-209ENST00000477605 CDC42BPAQ5VT25 1732 aa24.7■■□□□ 1.54
CCM2-209ENST00000477605 KDM5CP41229 1560 aa24.7■■□□□ 1.54
CCM2-209ENST00000477605 TSPY4P0CV99 314 aa24.7■■□□□ 1.54
CCM2-209ENST00000477605 TSPY10P0CW01 314 aa24.7■■□□□ 1.54
CCM2-209ENST00000477605 FAM69CQ0P6D2 419 aa24.7■■□□□ 1.54
CCM2-209ENST00000477605 NUP155O75694 1391 aa24.69■■□□□ 1.54
CCM2-209ENST00000477605 ARHGEF5Q12774 1597 aa24.69■■□□□ 1.54
CCM2-209ENST00000477605 DIP2BQ9P265 1576 aa24.68■■□□□ 1.54
CCM2-209ENST00000477605 RSPH4AQ5TD94 716 aa24.65■■□□□ 1.54
CCM2-209ENST00000477605 ASXL2Q76L83 1435 aa24.63■■□□□ 1.53
CCM2-209ENST00000477605 BCORL1Q5H9F3 1711 aa24.63■■□□□ 1.53
CCM2-209ENST00000477605 SMG6Q86US8 1419 aaKnown RBP24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms