RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 CDK11AQ9UQ88 783 aaPredicted RBP18.71■□□□□ 0.59
HLA-DMA-208ENST00000477541 HIRIP3Q9BW71 556 aaPredicted RBP18.7■□□□□ 0.58
HLA-DMA-208ENST00000477541 MYT1LQ9UL68 1186 aa18.7■□□□□ 0.58
HLA-DMA-208ENST00000477541 EIF4G2P78344 907 aaKnown RBP eCLIP18.69■□□□□ 0.58
HLA-DMA-208ENST00000477541 HNRNPUQ00839 825 aaKnown RBP eCLIP18.69■□□□□ 0.58
HLA-DMA-208ENST00000477541 NCOA1Q15788 1441 aa18.68■□□□□ 0.58
HLA-DMA-208ENST00000477541 WASHC2AQ641Q2 1341 aa18.67■□□□□ 0.58
HLA-DMA-208ENST00000477541 DENND4BO75064 1496 aaPredicted RBP18.67■□□□□ 0.58
HLA-DMA-208ENST00000477541 ROCK1Q13464 1354 aa18.66■□□□□ 0.58
HLA-DMA-208ENST00000477541 MAGI3Q5TCQ9 1506 aa18.66■□□□□ 0.58
HLA-DMA-208ENST00000477541 HSPA5P11021 654 aaKnown RBP18.66■□□□□ 0.58
HLA-DMA-208ENST00000477541 PPP4R2Q9NY27 417 aa18.66■□□□□ 0.58
HLA-DMA-208ENST00000477541 KIF13AQ9H1H9 1805 aa18.65■□□□□ 0.58
HLA-DMA-208ENST00000477541 ERCC6L2Q5T890 1561 aa18.64■□□□□ 0.57
HLA-DMA-208ENST00000477541 EPRSP07814 1512 aaKnown RBP18.63■□□□□ 0.57
HLA-DMA-208ENST00000477541 RPRD2Q5VT52 1461 aaKnown RBP18.62■□□□□ 0.57
HLA-DMA-208ENST00000477541 ZBED9Q6R2W3 1325 aa18.62■□□□□ 0.57
HLA-DMA-208ENST00000477541 CCDC7Q96M83 1385 aa18.61■□□□□ 0.57
HLA-DMA-208ENST00000477541 IQGAP2Q13576 1575 aa18.61■□□□□ 0.57
HLA-DMA-208ENST00000477541 PBRM1Q86U86 1689 aa18.61■□□□□ 0.57
HLA-DMA-208ENST00000477541 BCL11AQ9H165 835 aa18.6■□□□□ 0.57
HLA-DMA-208ENST00000477541 DNMT1P26358 1616 aaKnown RBP18.59■□□□□ 0.57
HLA-DMA-208ENST00000477541 KDM4FA0A1W2PPD8 638 aa18.58■□□□□ 0.57
HLA-DMA-208ENST00000477541 TEX14Q8IWB6 1497 aa18.58■□□□□ 0.56
HLA-DMA-208ENST00000477541 KDM6BO15054 1643 aa18.57■□□□□ 0.56
HLA-DMA-208ENST00000477541 CEP170Q5SW79 1584 aa18.57■□□□□ 0.56
HLA-DMA-208ENST00000477541 MPHOSPH9Q99550 1183 aa18.56■□□□□ 0.56
HLA-DMA-208ENST00000477541 PRKRIP1Q9H875 184 aaPredicted RBP18.56■□□□□ 0.56
HLA-DMA-208ENST00000477541 ANKRD30BQ9BXX2 1392 aa18.55■□□□□ 0.56
HLA-DMA-208ENST00000477541 SPATA31E1Q6ZUB1 1445 aa18.54■□□□□ 0.56
HLA-DMA-208ENST00000477541 ADAMTS12P58397 1594 aa18.54■□□□□ 0.56
HLA-DMA-208ENST00000477541 NUP160Q12769 1436 aa18.53■□□□□ 0.56
HLA-DMA-208ENST00000477541 MSH5O43196 834 aa18.53■□□□□ 0.56
HLA-DMA-208ENST00000477541 ERICH6Q7L0X2 663 aa18.53■□□□□ 0.56
HLA-DMA-208ENST00000477541 SHROOM2Q13796 1616 aa18.53■□□□□ 0.56
HLA-DMA-208ENST00000477541 GRIN2AQ12879 1464 aa18.53■□□□□ 0.56
HLA-DMA-208ENST00000477541 DAPK1P53355 1430 aa18.52■□□□□ 0.55
HLA-DMA-208ENST00000477541 RRP7BPQ9NSQ0 103 aa18.52■□□□□ 0.55
HLA-DMA-208ENST00000477541 ARID4BQ4LE39 1312 aaPredicted RBP18.51■□□□□ 0.55
HLA-DMA-208ENST00000477541 L3MBTL2Q969R5 705 aa18.5■□□□□ 0.55
HLA-DMA-208ENST00000477541 ABCC10Q5T3U5 1492 aa18.5■□□□□ 0.55
HLA-DMA-208ENST00000477541 ADGBQ8N7X0 1667 aa18.49■□□□□ 0.55
HLA-DMA-208ENST00000477541 SMG6Q86US8 1419 aaKnown RBP18.48■□□□□ 0.55
HLA-DMA-208ENST00000477541 ITSN2Q9NZM3 1697 aa18.47■□□□□ 0.55
HLA-DMA-208ENST00000477541 MRS2Q9HD23 443 aa18.46■□□□□ 0.55
HLA-DMA-208ENST00000477541 MBD5Q9P267 1494 aa18.46■□□□□ 0.55
HLA-DMA-208ENST00000477541 KIF14Q15058 1648 aa18.45■□□□□ 0.54
HLA-DMA-208ENST00000477541 CDK13Q14004 1512 aaKnown RBP18.45■□□□□ 0.54
HLA-DMA-208ENST00000477541 FAM69CQ0P6D2 419 aa18.45■□□□□ 0.54
HLA-DMA-208ENST00000477541 ABCC5O15440 1437 aa18.44■□□□□ 0.54
HLA-DMA-208ENST00000477541 KIF7Q2M1P5 1343 aa18.42■□□□□ 0.54
HLA-DMA-208ENST00000477541 CHIC2Q9UKJ5 165 aa18.42■□□□□ 0.54
HLA-DMA-208ENST00000477541 ROCK2O75116 1388 aaKnown RBP18.42■□□□□ 0.54
HLA-DMA-208ENST00000477541 RNF123Q5XPI4 1314 aa18.41■□□□□ 0.54
HLA-DMA-208ENST00000477541 ADGRL2O95490 1459 aa18.41■□□□□ 0.54
HLA-DMA-208ENST00000477541 KIAA0556O60303 1618 aa18.41■□□□□ 0.54
HLA-DMA-208ENST00000477541 DIP2BQ9P265 1576 aa18.41■□□□□ 0.54
HLA-DMA-208ENST00000477541 CROCC2H7BZ55 1655 aa18.4■□□□□ 0.54
HLA-DMA-208ENST00000477541 RAPGEF6Q8TEU7 1601 aa18.4■□□□□ 0.54
HLA-DMA-208ENST00000477541 ADCY10Q96PN6 1610 aa18.4■□□□□ 0.54
HLA-DMA-208ENST00000477541 C11orf95C9JLR9 678 aaPredicted RBP18.38■□□□□ 0.53
HLA-DMA-208ENST00000477541 IRX6P78412 446 aaPredicted RBP18.38■□□□□ 0.53
HLA-DMA-208ENST00000477541 KTN1Q86UP2 1357 aaKnown RBP18.38■□□□□ 0.53
HLA-DMA-208ENST00000477541 PZPP20742 1482 aa18.38■□□□□ 0.53
HLA-DMA-208ENST00000477541 NBPF8Q3BBV2 869 aa18.37■□□□□ 0.53
HLA-DMA-208ENST00000477541 CCDC184Q52MB2 194 aa18.37■□□□□ 0.53
HLA-DMA-208ENST00000477541 FAM9BQ8IZU0 186 aa18.37■□□□□ 0.53
HLA-DMA-208ENST00000477541 KIAA0586Q9BVV6 1533 aa18.37■□□□□ 0.53
HLA-DMA-208ENST00000477541 KDM5CP41229 1560 aa18.36■□□□□ 0.53
HLA-DMA-208ENST00000477541 DHX29Q7Z478 1369 aaKnown RBP18.36■□□□□ 0.53
HLA-DMA-208ENST00000477541 PRG4Q92954 1404 aaPredicted RBP18.36■□□□□ 0.53
HLA-DMA-208ENST00000477541 KIAA1107Q9UPP5 1409 aa18.36■□□□□ 0.53
HLA-DMA-208ENST00000477541 ARHGEF12Q9NZN5 1544 aa18.35■□□□□ 0.53
HLA-DMA-208ENST00000477541 UHRF1BP1Q6BDS2 1440 aa18.35■□□□□ 0.53
HLA-DMA-208ENST00000477541 NUDCQ9Y266 331 aa18.35■□□□□ 0.53
HLA-DMA-208ENST00000477541 NPM1P06748 294 aaKnown RBP eCLIP18.34■□□□□ 0.53
HLA-DMA-208ENST00000477541 NUP153P49790 1475 aaKnown RBP18.34■□□□□ 0.53
HLA-DMA-208ENST00000477541 SLC4A1APQ9BWU0 796 aaKnown RBP18.33■□□□□ 0.52
HLA-DMA-208ENST00000477541 RALGAPBQ86X10 1494 aa18.32■□□□□ 0.52
HLA-DMA-208ENST00000477541 TROQ12816 1431 aaPredicted RBP18.31■□□□□ 0.52
HLA-DMA-208ENST00000477541 CAMSAP2Q08AD1 1489 aa18.31■□□□□ 0.52
HLA-DMA-208ENST00000477541 DISP1Q96F81 1524 aa18.31■□□□□ 0.52
HLA-DMA-208ENST00000477541 BCORL1Q5H9F3 1711 aa18.31■□□□□ 0.52
HLA-DMA-208ENST00000477541 USP47Q96K76 1375 aa18.3■□□□□ 0.52
HLA-DMA-208ENST00000477541 SHANK2Q9UPX8 1470 aa18.29■□□□□ 0.52
HLA-DMA-208ENST00000477541 KDM5DQ9BY66 1539 aa18.29■□□□□ 0.52
HLA-DMA-208ENST00000477541 B4GALNT3Q6L9W6 998 aa18.29■□□□□ 0.52
HLA-DMA-208ENST00000477541 JPH4Q96JJ6 628 aa18.28■□□□□ 0.52
HLA-DMA-208ENST00000477541 NOP58Q9Y2X3 529 aaKnown RBP18.28■□□□□ 0.52
HLA-DMA-208ENST00000477541 ADGRL1O94910 1474 aa18.25■□□□□ 0.51
HLA-DMA-208ENST00000477541 ANKRD30AQ9BXX3 1397 aa18.25■□□□□ 0.51
HLA-DMA-208ENST00000477541 E9PCH4 1651 aa18.25■□□□□ 0.51
HLA-DMA-208ENST00000477541 KIF15Q9NS87 1388 aa18.24■□□□□ 0.51
HLA-DMA-208ENST00000477541 FOXD1Q16676 465 aa18.24■□□□□ 0.51
HLA-DMA-208ENST00000477541 BRD4O60885 1362 aaPredicted RBP18.24■□□□□ 0.51
HLA-DMA-208ENST00000477541 HECW2Q9P2P5 1572 aa18.24■□□□□ 0.51
HLA-DMA-208ENST00000477541 LRPPRCP42704 1394 aaKnown RBP18.23■□□□□ 0.51
HLA-DMA-208ENST00000477541 ZMYM4Q5VZL5 1548 aa18.22■□□□□ 0.51
HLA-DMA-208ENST00000477541 GPATCH8Q9UKJ3 1502 aaKnown RBP18.22■□□□□ 0.51
HLA-DMA-208ENST00000477541 TSPOAP1O95153 1857 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms