RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 ABCC5O15440 1437 aa21.61■■□□□ 1.05
COL4A6-206ENST00000477085 CYB5RLQ6IPT4 315 aa21.61■■□□□ 1.05
COL4A6-206ENST00000477085 ASXL2Q76L83 1435 aa21.6■■□□□ 1.05
COL4A6-206ENST00000477085 DAPK1P53355 1430 aa21.59■■□□□ 1.05
COL4A6-206ENST00000477085 CHIC2Q9UKJ5 165 aa21.59■■□□□ 1.05
COL4A6-206ENST00000477085 CDC42BPBQ9Y5S2 1711 aa21.58■■□□□ 1.05
COL4A6-206ENST00000477085 PREX2Q70Z35 1606 aa21.57■■□□□ 1.04
COL4A6-206ENST00000477085 DNMT1P26358 1616 aaKnown RBP21.57■■□□□ 1.04
COL4A6-206ENST00000477085 NPM1P06748 294 aaKnown RBP eCLIP21.56■■□□□ 1.04
COL4A6-206ENST00000477085 HFM1A2PYH4 1435 aa21.56■■□□□ 1.04
COL4A6-206ENST00000477085 NAIPQ13075 1403 aa21.55■■□□□ 1.04
COL4A6-206ENST00000477085 DHX57Q6P158 1386 aaKnown RBP21.54■■□□□ 1.04
COL4A6-206ENST00000477085 PLCH2O75038 1416 aa21.53■■□□□ 1.04
COL4A6-206ENST00000477085 RRP7BPQ9NSQ0 103 aa21.53■■□□□ 1.04
COL4A6-206ENST00000477085 SAMD9LQ8IVG5 1584 aa21.53■■□□□ 1.04
COL4A6-206ENST00000477085 ZEB1P37275 1124 aaPredicted RBP21.52■■□□□ 1.04
COL4A6-206ENST00000477085 MBD5Q9P267 1494 aa21.51■■□□□ 1.03
COL4A6-206ENST00000477085 HNRNPMP52272 730 aaKnown RBP eCLIP21.51■■□□□ 1.03
COL4A6-206ENST00000477085 ARHGAP5Q13017 1502 aa21.5■■□□□ 1.03
COL4A6-206ENST00000477085 AKNAQ7Z591 1439 aa21.5■■□□□ 1.03
COL4A6-206ENST00000477085 MYO5CQ9NQX4 1742 aa21.5■■□□□ 1.03
COL4A6-206ENST00000477085 ROCK1Q13464 1354 aa21.47■■□□□ 1.03
COL4A6-206ENST00000477085 ABCA9Q8IUA7 1624 aa21.47■■□□□ 1.03
COL4A6-206ENST00000477085 KDM6BO15054 1643 aa21.44■■□□□ 1.02
COL4A6-206ENST00000477085 ARHGEF12Q9NZN5 1544 aa21.43■■□□□ 1.02
COL4A6-206ENST00000477085 CROCC2H7BZ55 1655 aa21.43■■□□□ 1.02
COL4A6-206ENST00000477085 ARHGEF5Q12774 1597 aa21.43■■□□□ 1.02
COL4A6-206ENST00000477085 NCOA1Q15788 1441 aa21.43■■□□□ 1.02
COL4A6-206ENST00000477085 EFCAB2Q5VUJ9 269 aa21.43■■□□□ 1.02
COL4A6-206ENST00000477085 GCC2Q8IWJ2 1684 aa21.42■■□□□ 1.02
COL4A6-206ENST00000477085 SYCP2Q9BX26 1530 aa21.42■■□□□ 1.02
COL4A6-206ENST00000477085 ARAP3Q8WWN8 1544 aa21.41■■□□□ 1.02
COL4A6-206ENST00000477085 ADGRL2O95490 1459 aa21.41■■□□□ 1.02
COL4A6-206ENST00000477085 KIAA1107Q9UPP5 1409 aa21.41■■□□□ 1.02
COL4A6-206ENST00000477085 MAPKBP1O60336 1514 aa21.4■■□□□ 1.02
COL4A6-206ENST00000477085 SHANK2Q9UPX8 1470 aa21.39■■□□□ 1.01
COL4A6-206ENST00000477085 C9orf84Q5VXU9 1444 aa21.39■■□□□ 1.01
COL4A6-206ENST00000477085 CCDC141Q6ZP82 1450 aa21.38■■□□□ 1.01
COL4A6-206ENST00000477085 RSPH4AQ5TD94 716 aa21.37■■□□□ 1.01
COL4A6-206ENST00000477085 PLEKHH2Q8IVE3 1493 aa21.37■■□□□ 1.01
COL4A6-206ENST00000477085 TSPY4P0CV99 314 aa21.36■■□□□ 1.01
COL4A6-206ENST00000477085 TSPY10P0CW01 314 aa21.36■■□□□ 1.01
COL4A6-206ENST00000477085 ABCC1P33527 1531 aa21.36■■□□□ 1.01
COL4A6-206ENST00000477085 ADGBQ8N7X0 1667 aa21.35■■□□□ 1.01
COL4A6-206ENST00000477085 CLSPNQ9HAW4 1339 aa21.35■■□□□ 1.01
COL4A6-206ENST00000477085 FANCAO15360 1455 aa21.35■■□□□ 1.01
COL4A6-206ENST00000477085 ANKRD30AQ9BXX3 1397 aa21.34■■□□□ 1.01
COL4A6-206ENST00000477085 CD109Q6YHK3 1445 aa21.33■■□□□ 1.01
COL4A6-206ENST00000477085 TRAPPC8Q9Y2L5 1435 aa21.33■■□□□ 1.01
COL4A6-206ENST00000477085 MAST1Q9Y2H9 1570 aa21.29■■□□□ 1
COL4A6-206ENST00000477085 AFAP1Q8N556 730 aa21.28■■□□□ 1
COL4A6-206ENST00000477085 DENND4BO75064 1496 aaPredicted RBP21.27■■□□□ 1
COL4A6-206ENST00000477085 KIF15Q9NS87 1388 aa21.26■□□□□ 0.99
COL4A6-206ENST00000477085 TRIM52Q96A61 297 aa21.25■□□□□ 0.99
COL4A6-206ENST00000477085 ANKRD50Q9ULJ7 1429 aa21.25■□□□□ 0.99
COL4A6-206ENST00000477085 ADGRL1O94910 1474 aa21.25■□□□□ 0.99
COL4A6-206ENST00000477085 SCAPERQ9BY12 1400 aa21.25■□□□□ 0.99
COL4A6-206ENST00000477085 GLI2P10070 1586 aa21.24■□□□□ 0.99
COL4A6-206ENST00000477085 MAP3K4Q9Y6R4 1608 aa21.23■□□□□ 0.99
COL4A6-206ENST00000477085 DIP2BQ9P265 1576 aa21.21■□□□□ 0.99
COL4A6-206ENST00000477085 FAM69CQ0P6D2 419 aa21.21■□□□□ 0.99
COL4A6-206ENST00000477085 MPHOSPH9Q99550 1183 aa21.21■□□□□ 0.99
COL4A6-206ENST00000477085 SIN3AQ96ST3 1273 aa21.2■□□□□ 0.99
COL4A6-206ENST00000477085 PLXNC1O60486 1568 aa21.19■□□□□ 0.98
COL4A6-206ENST00000477085 SPAG9O60271 1321 aaKnown RBP21.19■□□□□ 0.98
COL4A6-206ENST00000477085 RTEL1-TNFRSF6BF6WH68 1400 aa21.17■□□□□ 0.98
COL4A6-206ENST00000477085 PZPP20742 1482 aa21.17■□□□□ 0.98
COL4A6-206ENST00000477085 ZFYVE16Q7Z3T8 1539 aa21.16■□□□□ 0.98
COL4A6-206ENST00000477085 ACIN1Q9UKV3 1341 aaKnown RBP21.16■□□□□ 0.98
COL4A6-206ENST00000477085 CFAP74Q9C0B2 1584 aa21.15■□□□□ 0.98
COL4A6-206ENST00000477085 NEO1Q92859 1461 aa21.15■□□□□ 0.98
COL4A6-206ENST00000477085 FOXD1Q16676 465 aa21.14■□□□□ 0.97
COL4A6-206ENST00000477085 NEUROD1Q13562 356 aa21.13■□□□□ 0.97
COL4A6-206ENST00000477085 INO80Q9ULG1 1556 aaPredicted RBP21.13■□□□□ 0.97
COL4A6-206ENST00000477085 DUOX2Q9NRD8 1548 aa21.12■□□□□ 0.97
COL4A6-206ENST00000477085 POGZQ7Z3K3 1410 aa21.11■□□□□ 0.97
COL4A6-206ENST00000477085 SLC4A1APQ9BWU0 796 aaKnown RBP21.11■□□□□ 0.97
COL4A6-206ENST00000477085 ATP7AQ04656 1500 aa21.11■□□□□ 0.97
COL4A6-206ENST00000477085 ZNF518AQ6AHZ1 1483 aa21.1■□□□□ 0.97
COL4A6-206ENST00000477085 NUP155O75694 1391 aa21.09■□□□□ 0.97
COL4A6-206ENST00000477085 RAPGEF3O95398 923 aa21.09■□□□□ 0.97
COL4A6-206ENST00000477085 PPRC1Q5VV67 1664 aaKnown RBP21.08■□□□□ 0.96
COL4A6-206ENST00000477085 ERBINQ96RT1 1412 aa21.07■□□□□ 0.96
COL4A6-206ENST00000477085 KDM5DQ9BY66 1539 aa21.07■□□□□ 0.96
COL4A6-206ENST00000477085 KDM5CP41229 1560 aa21.07■□□□□ 0.96
COL4A6-206ENST00000477085 KIDINS220Q9ULH0 1771 aa21.06■□□□□ 0.96
COL4A6-206ENST00000477085 ANKRD30BQ9BXX2 1392 aa21.05■□□□□ 0.96
COL4A6-206ENST00000477085 KIF13AQ9H1H9 1805 aa21.05■□□□□ 0.96
COL4A6-206ENST00000477085 MLH3Q9UHC1 1453 aa21.04■□□□□ 0.96
COL4A6-206ENST00000477085 PKD2Q13563 968 aa21.03■□□□□ 0.96
COL4A6-206ENST00000477085 DNAJC5Q9H3Z4 198 aa21.03■□□□□ 0.96
COL4A6-206ENST00000477085 MYT1LQ9UL68 1186 aa21.03■□□□□ 0.96
COL4A6-206ENST00000477085 UNC13BO14795 1591 aa21.03■□□□□ 0.96
COL4A6-206ENST00000477085 TSPOAP1O95153 1857 aa21.02■□□□□ 0.96
COL4A6-206ENST00000477085 DHX29Q7Z478 1369 aaKnown RBP21.01■□□□□ 0.95
COL4A6-206ENST00000477085 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21■□□□□ 0.95
COL4A6-206ENST00000477085 MAGI2Q86UL8 1455 aa21■□□□□ 0.95
COL4A6-206ENST00000477085 RICTORQ6R327 1708 aa21■□□□□ 0.95
COL4A6-206ENST00000477085 FAM135AQ9P2D6 1515 aa21■□□□□ 0.95
COL4A6-206ENST00000477085 TIMELESSQ9UNS1 1208 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms