RNA–Protein interactions for RNA: ENST00000476162.5

VARS2-207, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 1 (best)

Gene VARS2, Length 2,228 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-207ENST00000476162 ROCK1Q13464 1354 aa22.8■■□□□ 1.24
VARS2-207ENST00000476162 DENND4BO75064 1496 aaPredicted RBP22.8■■□□□ 1.24
VARS2-207ENST00000476162 DNMT1P26358 1616 aaKnown RBP22.8■■□□□ 1.24
VARS2-207ENST00000476162 CFDP1Q9UEE9 299 aaPredicted RBP22.78■■□□□ 1.24
VARS2-207ENST00000476162 MPHOSPH9Q99550 1183 aa22.77■■□□□ 1.24
VARS2-207ENST00000476162 HIRIP3Q9BW71 556 aaPredicted RBP22.77■■□□□ 1.24
VARS2-207ENST00000476162 GPATCH8Q9UKJ3 1502 aaKnown RBP22.76■■□□□ 1.23
VARS2-207ENST00000476162 KIF14Q15058 1648 aa22.76■■□□□ 1.23
VARS2-207ENST00000476162 ABCA8O94911 1581 aa22.76■■□□□ 1.23
VARS2-207ENST00000476162 DDX10Q13206 875 aaKnown RBP22.74■■□□□ 1.23
VARS2-207ENST00000476162 ADCY10Q96PN6 1610 aa22.73■■□□□ 1.23
VARS2-207ENST00000476162 CAMSAP2Q08AD1 1489 aa22.73■■□□□ 1.23
VARS2-207ENST00000476162 PLEKHD1A6NEE1 506 aa22.73■■□□□ 1.23
VARS2-207ENST00000476162 BCL11AQ9H165 835 aa22.73■■□□□ 1.23
VARS2-207ENST00000476162 ATP10BO94823 1461 aa22.72■■□□□ 1.23
VARS2-207ENST00000476162 ZNF777Q9ULD5 760 aaPredicted RBP22.72■■□□□ 1.23
VARS2-207ENST00000476162 ITSN2Q9NZM3 1697 aa22.71■■□□□ 1.23
VARS2-207ENST00000476162 KDM5BQ9UGL1 1544 aa22.7■■□□□ 1.23
VARS2-207ENST00000476162 FOXD1Q16676 465 aa22.69■■□□□ 1.22
VARS2-207ENST00000476162 PTPRGP23470 1445 aa22.67■■□□□ 1.22
VARS2-207ENST00000476162 NCOA1Q15788 1441 aa22.64■■□□□ 1.22
VARS2-207ENST00000476162 CHD1O14646 1710 aa22.63■■□□□ 1.21
VARS2-207ENST00000476162 ABCC10Q5T3U5 1492 aa22.62■■□□□ 1.21
VARS2-207ENST00000476162 SLC4A1APQ9BWU0 796 aaKnown RBP22.61■■□□□ 1.21
VARS2-207ENST00000476162 ANKRD30BQ9BXX2 1392 aa22.6■■□□□ 1.21
VARS2-207ENST00000476162 KCNH8Q96L42 1107 aa22.6■■□□□ 1.21
VARS2-207ENST00000476162 CDC42BPAQ5VT25 1732 aa22.58■■□□□ 1.21
VARS2-207ENST00000476162 ADGRL2O95490 1459 aa22.58■■□□□ 1.21
VARS2-207ENST00000476162 L3MBTL2Q969R5 705 aa22.58■■□□□ 1.2
VARS2-207ENST00000476162 ADGBQ8N7X0 1667 aa22.56■■□□□ 1.2
VARS2-207ENST00000476162 ANKRD30AQ9BXX3 1397 aa22.56■■□□□ 1.2
VARS2-207ENST00000476162 CROCC2H7BZ55 1655 aa22.56■■□□□ 1.2
VARS2-207ENST00000476162 RPRD2Q5VT52 1461 aaKnown RBP22.54■■□□□ 1.2
VARS2-207ENST00000476162 PZPP20742 1482 aa22.53■■□□□ 1.2
VARS2-207ENST00000476162 ANP32EQ9BTT0 268 aa22.52■■□□□ 1.2
VARS2-207ENST00000476162 SHROOM2Q13796 1616 aa22.52■■□□□ 1.2
VARS2-207ENST00000476162 HSPA5P11021 654 aaKnown RBP22.49■■□□□ 1.19
VARS2-207ENST00000476162 C9orf84Q5VXU9 1444 aa22.49■■□□□ 1.19
VARS2-207ENST00000476162 ANKRD50Q9ULJ7 1429 aa22.49■■□□□ 1.19
VARS2-207ENST00000476162 ANP32CO43423 234 aa22.47■■□□□ 1.19
VARS2-207ENST00000476162 TSPY4P0CV99 314 aa22.47■■□□□ 1.19
VARS2-207ENST00000476162 TSPY10P0CW01 314 aa22.47■■□□□ 1.19
VARS2-207ENST00000476162 HNRNPMP52272 730 aaKnown RBP eCLIP22.47■■□□□ 1.19
VARS2-207ENST00000476162 SHANK2Q9UPX8 1470 aa22.47■■□□□ 1.19
VARS2-207ENST00000476162 ERCC6L2Q5T890 1561 aa22.47■■□□□ 1.19
VARS2-207ENST00000476162 TEX14Q8IWB6 1497 aa22.46■■□□□ 1.19
VARS2-207ENST00000476162 EIF4G2P78344 907 aaKnown RBP eCLIP22.46■■□□□ 1.19
VARS2-207ENST00000476162 NBPF8Q3BBV2 869 aa22.43■■□□□ 1.18
VARS2-207ENST00000476162 KIAA1107Q9UPP5 1409 aa22.43■■□□□ 1.18
VARS2-207ENST00000476162 PKD2Q13563 968 aa22.43■■□□□ 1.18
VARS2-207ENST00000476162 MBD5Q9P267 1494 aa22.42■■□□□ 1.18
VARS2-207ENST00000476162 CCER2I3L3R5 266 aa22.41■■□□□ 1.18
VARS2-207ENST00000476162 WASHC2AQ641Q2 1341 aa22.41■■□□□ 1.18
VARS2-207ENST00000476162 ARHGEF5Q12774 1597 aa22.4■■□□□ 1.18
VARS2-207ENST00000476162 CDC42BPBQ9Y5S2 1711 aa22.39■■□□□ 1.17
VARS2-207ENST00000476162 ABCC2Q92887 1545 aa22.39■■□□□ 1.17
VARS2-207ENST00000476162 SAMD9LQ8IVG5 1584 aa22.39■■□□□ 1.17
VARS2-207ENST00000476162 NUP155O75694 1391 aa22.39■■□□□ 1.17
VARS2-207ENST00000476162 PREX2Q70Z35 1606 aa22.39■■□□□ 1.17
VARS2-207ENST00000476162 KIF15Q9NS87 1388 aa22.38■■□□□ 1.17
VARS2-207ENST00000476162 CCDC141Q6ZP82 1450 aa22.35■■□□□ 1.17
VARS2-207ENST00000476162 RSPH4AQ5TD94 716 aa22.35■■□□□ 1.17
VARS2-207ENST00000476162 TTC37Q6PGP7 1564 aa22.34■■□□□ 1.17
VARS2-207ENST00000476162 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.34■■□□□ 1.17
VARS2-207ENST00000476162 CLASP1Q7Z460 1538 aa22.33■■□□□ 1.17
VARS2-207ENST00000476162 ARHGAP5Q13017 1502 aa22.32■■□□□ 1.16
VARS2-207ENST00000476162 C11orf95C9JLR9 678 aaPredicted RBP22.31■■□□□ 1.16
VARS2-207ENST00000476162 KDM5DQ9BY66 1539 aa22.3■■□□□ 1.16
VARS2-207ENST00000476162 SYCP2Q9BX26 1530 aa22.29■■□□□ 1.16
VARS2-207ENST00000476162 SPATA31E1Q6ZUB1 1445 aa22.27■■□□□ 1.16
VARS2-207ENST00000476162 TSHZ2Q9NRE2 1034 aa22.26■■□□□ 1.15
VARS2-207ENST00000476162 CCDC7Q96M83 1385 aa22.26■■□□□ 1.15
VARS2-207ENST00000476162 ZNF326Q5BKZ1 582 aaKnown RBP22.24■■□□□ 1.15
VARS2-207ENST00000476162 UHRF1BP1LA0JNW5 1464 aa22.24■■□□□ 1.15
VARS2-207ENST00000476162 MYO5CQ9NQX4 1742 aa22.23■■□□□ 1.15
VARS2-207ENST00000476162 ZCCHC11Q5TAX3 1644 aaKnown RBP22.23■■□□□ 1.15
VARS2-207ENST00000476162 SUPT16HQ9Y5B9 1047 aaKnown RBP22.23■■□□□ 1.15
VARS2-207ENST00000476162 CNTLNQ9NXG0 1405 aa22.23■■□□□ 1.15
VARS2-207ENST00000476162 PLEKHH2Q8IVE3 1493 aa22.21■■□□□ 1.15
VARS2-207ENST00000476162 MAST1Q9Y2H9 1570 aa22.2■■□□□ 1.14
VARS2-207ENST00000476162 PLCH2O75038 1416 aa22.19■■□□□ 1.14
VARS2-207ENST00000476162 FAM135AQ9P2D6 1515 aa22.19■■□□□ 1.14
VARS2-207ENST00000476162 KIF7Q2M1P5 1343 aa22.18■■□□□ 1.14
VARS2-207ENST00000476162 ARHGEF12Q9NZN5 1544 aa22.18■■□□□ 1.14
VARS2-207ENST00000476162 EFCAB2Q5VUJ9 269 aa22.16■■□□□ 1.14
VARS2-207ENST00000476162 UHRF1BP1Q6BDS2 1440 aa22.15■■□□□ 1.14
VARS2-207ENST00000476162 USP47Q96K76 1375 aa22.15■■□□□ 1.14
VARS2-207ENST00000476162 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.14■■□□□ 1.135e-7■□□□□ 9.5
VARS2-207ENST00000476162 KDM2AQ9Y2K7 1162 aa22.12■■□□□ 1.13
VARS2-207ENST00000476162 PLXNC1O60486 1568 aa22.12■■□□□ 1.13
VARS2-207ENST00000476162 DCAF11Q8TEB1 546 aa22.11■■□□□ 1.13
VARS2-207ENST00000476162 UNC13BO14795 1591 aa22.1■■□□□ 1.13
VARS2-207ENST00000476162 RALGAPBQ86X10 1494 aa22.1■■□□□ 1.13
VARS2-207ENST00000476162 PRKRIP1Q9H875 184 aaPredicted RBP22.1■■□□□ 1.13
VARS2-207ENST00000476162 POLR1AO95602 1720 aaPredicted RBP22.09■■□□□ 1.13
VARS2-207ENST00000476162 PRKCSHP14314 528 aaPredicted RBP22.09■■□□□ 1.13
VARS2-207ENST00000476162 DUOX2Q9NRD8 1548 aa22.08■■□□□ 1.13
VARS2-207ENST00000476162 KDM5CP41229 1560 aa22.08■■□□□ 1.12
VARS2-207ENST00000476162 CARD11Q9BXL7 1154 aa22.07■■□□□ 1.12
VARS2-207ENST00000476162 TRAPPC8Q9Y2L5 1435 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms