RNA–Protein interactions for RNA: ENST00000475558.5

SHQ1-207, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 5

Gene SHQ1, Length 666 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-207ENST00000475558 P3H3Q8IVL6 736 aa11.09□□□□□ -0.63
SHQ1-207ENST00000475558 ADAMTSL3P82987 1691 aa11.08□□□□□ -0.64
SHQ1-207ENST00000475558 RAPGEF3O95398 923 aa11.08□□□□□ -0.64
SHQ1-207ENST00000475558 ABCA9Q8IUA7 1624 aa11.08□□□□□ -0.64
SHQ1-207ENST00000475558 NEO1Q92859 1461 aa11.07□□□□□ -0.64
SHQ1-207ENST00000475558 ARID4BQ4LE39 1312 aaPredicted RBP11.07□□□□□ -0.64
SHQ1-207ENST00000475558 POLA2Q14181 598 aa11.05□□□□□ -0.64
SHQ1-207ENST00000475558 BCORL1Q5H9F3 1711 aa11.04□□□□□ -0.64
SHQ1-207ENST00000475558 EHMT2Q96KQ7 1210 aa11.02□□□□□ -0.65
SHQ1-207ENST00000475558 PCF11O94913 1555 aaKnown RBP11.02□□□□□ -0.65
SHQ1-207ENST00000475558 RAPGEF6Q8TEU7 1601 aa11.02□□□□□ -0.65
SHQ1-207ENST00000475558 PLEKHD1A6NEE1 506 aa11.01□□□□□ -0.65
SHQ1-207ENST00000475558 SAMD9Q5K651 1589 aa11□□□□□ -0.65
SHQ1-207ENST00000475558 MADDQ8WXG6 1647 aa11□□□□□ -0.65
SHQ1-207ENST00000475558 DENND4BO75064 1496 aaPredicted RBP11□□□□□ -0.65
SHQ1-207ENST00000475558 LMTK3Q96Q04 1460 aa11□□□□□ -0.65
SHQ1-207ENST00000475558 FRMPD1Q5SYB0 1578 aa10.99□□□□□ -0.65
SHQ1-207ENST00000475558 FHOD3Q2V2M9 1422 aa10.98□□□□□ -0.65
SHQ1-207ENST00000475558 POGZQ7Z3K3 1410 aa10.98□□□□□ -0.65
SHQ1-207ENST00000475558 AKNAQ7Z591 1439 aa10.98□□□□□ -0.65
SHQ1-207ENST00000475558 NUP153P49790 1475 aaKnown RBP10.97□□□□□ -0.65
SHQ1-207ENST00000475558 RIMS1Q86UR5 1692 aaKnown RBP10.96□□□□□ -0.65
SHQ1-207ENST00000475558 ARHGEF40Q8TER5 1519 aa10.96□□□□□ -0.65
SHQ1-207ENST00000475558 RICTORQ6R327 1708 aa10.95□□□□□ -0.66
SHQ1-207ENST00000475558 CFAP74Q9C0B2 1584 aa10.95□□□□□ -0.66
SHQ1-207ENST00000475558 FANCAO15360 1455 aa10.95□□□□□ -0.66
SHQ1-207ENST00000475558 HSPA2P54652 639 aa10.95□□□□□ -0.66
SHQ1-207ENST00000475558 CLIP1P30622 1438 aa10.94□□□□□ -0.66
SHQ1-207ENST00000475558 CEP162Q5TB80 1403 aa10.94□□□□□ -0.66
SHQ1-207ENST00000475558 RANGAP1P46060 587 aaPredicted RBP10.94□□□□□ -0.66
SHQ1-207ENST00000475558 CERKQ8TCT0 537 aa10.94□□□□□ -0.66
SHQ1-207ENST00000475558 MAGI2Q86UL8 1455 aa10.93□□□□□ -0.66
SHQ1-207ENST00000475558 CHRDL2Q6WN34 429 aa10.93□□□□□ -0.66
SHQ1-207ENST00000475558 EFCAB5A4FU69 1503 aa10.93□□□□□ -0.66
SHQ1-207ENST00000475558 ZMYM4Q5VZL5 1548 aa10.92□□□□□ -0.66
SHQ1-207ENST00000475558 ZFYVE16Q7Z3T8 1539 aa10.92□□□□□ -0.66
SHQ1-207ENST00000475558 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.92□□□□□ -0.66
SHQ1-207ENST00000475558 MLECQ14165 292 aa10.91□□□□□ -0.66
SHQ1-207ENST00000475558 YEATS2Q9ULM3 1422 aa10.91□□□□□ -0.66
SHQ1-207ENST00000475558 SLC4A1APQ9BWU0 796 aaKnown RBP10.89□□□□□ -0.67
SHQ1-207ENST00000475558 SCAPERQ9BY12 1400 aa10.89□□□□□ -0.67
SHQ1-207ENST00000475558 PLCH2O75038 1416 aa10.88□□□□□ -0.67
SHQ1-207ENST00000475558 TTC37Q6PGP7 1564 aa10.88□□□□□ -0.67
SHQ1-207ENST00000475558 HECW1Q76N89 1606 aa10.87□□□□□ -0.67
SHQ1-207ENST00000475558 EFCAB2Q5VUJ9 269 aa10.87□□□□□ -0.67
SHQ1-207ENST00000475558 FER1L4A9Z1Z3 1794 aa10.87□□□□□ -0.67
SHQ1-207ENST00000475558 ATP10AO60312 1499 aa10.87□□□□□ -0.67
SHQ1-207ENST00000475558 FOXD4L1Q9NU39 408 aa10.86□□□□□ -0.67
SHQ1-207ENST00000475558 SIGLEC1Q9BZZ2 1709 aa10.86□□□□□ -0.67
SHQ1-207ENST00000475558 SETD1BQ9UPS6 1966 aaKnown RBP10.85□□□□□ -0.67
SHQ1-207ENST00000475558 CDK11AQ9UQ88 783 aaPredicted RBP10.85□□□□□ -0.67
SHQ1-207ENST00000475558 C9orf84Q5VXU9 1444 aa10.84□□□□□ -0.67
SHQ1-207ENST00000475558 ARHGEF12Q9NZN5 1544 aa10.84□□□□□ -0.67
SHQ1-207ENST00000475558 CDK13Q14004 1512 aaKnown RBP10.84□□□□□ -0.67
SHQ1-207ENST00000475558 PREX1Q8TCU6 1659 aa10.83□□□□□ -0.68
SHQ1-207ENST00000475558 CEBPAP49715 358 aaPredicted RBP10.83□□□□□ -0.68
SHQ1-207ENST00000475558 ATP1B4Q9UN42 357 aaPredicted RBP10.83□□□□□ -0.68
SHQ1-207ENST00000475558 ZBTB12Q9Y330 459 aaPredicted RBP10.83□□□□□ -0.68
SHQ1-207ENST00000475558 FMN1Q68DA7 1419 aa10.83□□□□□ -0.68
SHQ1-207ENST00000475558 VPS8Q8N3P4 1428 aa10.83□□□□□ -0.68
SHQ1-207ENST00000475558 MYT1LQ9UL68 1186 aa10.81□□□□□ -0.68
SHQ1-207ENST00000475558 MYO5CQ9NQX4 1742 aa10.81□□□□□ -0.68
SHQ1-207ENST00000475558 ZNF518AQ6AHZ1 1483 aa10.81□□□□□ -0.68
SHQ1-207ENST00000475558 DISP3Q9P2K9 1392 aa10.8□□□□□ -0.68
SHQ1-207ENST00000475558 ATF5Q9Y2D1 282 aaPredicted RBP10.8□□□□□ -0.68
SHQ1-207ENST00000475558 UHRF1BP1Q6BDS2 1440 aa10.8□□□□□ -0.68
SHQ1-207ENST00000475558 ARHGAP35Q9NRY4 1499 aa10.8□□□□□ -0.68
SHQ1-207ENST00000475558 AFAP1Q8N556 730 aa10.79□□□□□ -0.68
SHQ1-207ENST00000475558 STRCQ7RTU9 1775 aa10.78□□□□□ -0.68
SHQ1-207ENST00000475558 SOCS7O14512 581 aa10.78□□□□□ -0.68
SHQ1-207ENST00000475558 AKT1S1Q96B36 256 aa10.78□□□□□ -0.68
SHQ1-207ENST00000475558 ESF1Q9H501 851 aaKnown RBP10.78□□□□□ -0.68
SHQ1-207ENST00000475558 PTPRTO14522 1441 aa10.77□□□□□ -0.68
SHQ1-207ENST00000475558 KDM5CP41229 1560 aa10.77□□□□□ -0.69
SHQ1-207ENST00000475558 TROQ12816 1431 aaPredicted RBP10.76□□□□□ -0.69
SHQ1-207ENST00000475558 ARHGAP5Q13017 1502 aa10.76□□□□□ -0.69
SHQ1-207ENST00000475558 TRIM26Q12899 539 aaPredicted RBP10.76□□□□□ -0.69
SHQ1-207ENST00000475558 ILDR2Q71H61 639 aa10.76□□□□□ -0.69
SHQ1-207ENST00000475558 KIF14Q15058 1648 aa10.76□□□□□ -0.69
SHQ1-207ENST00000475558 REREQ9P2R6 1566 aa10.75□□□□□ -0.69
SHQ1-207ENST00000475558 MLH3Q9UHC1 1453 aa10.74□□□□□ -0.69
SHQ1-207ENST00000475558 CASKIN1Q8WXD9 1431 aa10.74□□□□□ -0.69
SHQ1-207ENST00000475558 TRAPPC8Q9Y2L5 1435 aa10.74□□□□□ -0.69
SHQ1-207ENST00000475558 DIP2CQ9Y2E4 1556 aa10.73□□□□□ -0.69
SHQ1-207ENST00000475558 AGLP35573 1532 aa10.73□□□□□ -0.69
SHQ1-207ENST00000475558 MAP3K1Q13233 1512 aa10.73□□□□□ -0.69
SHQ1-207ENST00000475558 CNTLNQ9NXG0 1405 aa10.72□□□□□ -0.69
SHQ1-207ENST00000475558 C3P01024 1663 aa10.72□□□□□ -0.69
SHQ1-207ENST00000475558 IQSEC2Q5JU85 1478 aa10.71□□□□□ -0.69
SHQ1-207ENST00000475558 CDC42BPBQ9Y5S2 1711 aa10.7□□□□□ -0.7
SHQ1-207ENST00000475558 ABCA6Q8N139 1617 aa10.7□□□□□ -0.7
SHQ1-207ENST00000475558 LTBP4Q8N2S1 1624 aa10.69□□□□□ -0.7
SHQ1-207ENST00000475558 NCOA1Q15788 1441 aa10.68□□□□□ -0.7
SHQ1-207ENST00000475558 SPATA31D1Q6ZQQ2 1576 aa10.68□□□□□ -0.7
SHQ1-207ENST00000475558 ABCC1P33527 1531 aa10.68□□□□□ -0.7
SHQ1-207ENST00000475558 FYCO1Q9BQS8 1478 aa10.68□□□□□ -0.7
SHQ1-207ENST00000475558 NPATQ14207 1427 aa10.67□□□□□ -0.7
SHQ1-207ENST00000475558 PREX2Q70Z35 1606 aa10.67□□□□□ -0.7
SHQ1-207ENST00000475558 REM2Q8IYK8 340 aaPredicted RBP10.67□□□□□ -0.7
SHQ1-207ENST00000475558 KIDINS220Q9ULH0 1771 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms