RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 TIMELESSQ9UNS1 1208 aa17.86■□□□□ 0.45
SYNE1-222ENST00000474655 CROCC2H7BZ55 1655 aa17.86■□□□□ 0.45
SYNE1-222ENST00000474655 ACIN1Q9UKV3 1341 aaKnown RBP17.85■□□□□ 0.45
SYNE1-222ENST00000474655 ZNF644Q9H582 1327 aaPredicted RBP17.85■□□□□ 0.45
SYNE1-222ENST00000474655 CFDP1Q9UEE9 299 aaPredicted RBP17.84■□□□□ 0.45
SYNE1-222ENST00000474655 ADGBQ8N7X0 1667 aa17.84■□□□□ 0.45
SYNE1-222ENST00000474655 UHRF1BP1LA0JNW5 1464 aa17.84■□□□□ 0.45
SYNE1-222ENST00000474655 KDM6BO15054 1643 aa17.84■□□□□ 0.45
SYNE1-222ENST00000474655 DIEXFQ68CQ4 756 aaKnown RBP17.83■□□□□ 0.44
SYNE1-222ENST00000474655 RRP7BPQ9NSQ0 103 aa17.82■□□□□ 0.44
SYNE1-222ENST00000474655 CHIC2Q9UKJ5 165 aa17.81■□□□□ 0.44
SYNE1-222ENST00000474655 ADGRL2O95490 1459 aa17.81■□□□□ 0.44
SYNE1-222ENST00000474655 PREX2Q70Z35 1606 aa17.8■□□□□ 0.44
SYNE1-222ENST00000474655 CDC42BPBQ9Y5S2 1711 aa17.8■□□□□ 0.44
SYNE1-222ENST00000474655 SIN3AQ96ST3 1273 aa17.77■□□□□ 0.44
SYNE1-222ENST00000474655 DENND4BO75064 1496 aaPredicted RBP17.77■□□□□ 0.44
SYNE1-222ENST00000474655 SHANK2Q9UPX8 1470 aa17.77■□□□□ 0.44
SYNE1-222ENST00000474655 KDM5BQ9UGL1 1544 aa17.77■□□□□ 0.44
SYNE1-222ENST00000474655 ARHGEF5Q12774 1597 aa17.76■□□□□ 0.43
SYNE1-222ENST00000474655 NCOA1Q15788 1441 aa17.76■□□□□ 0.43
SYNE1-222ENST00000474655 ZCCHC11Q5TAX3 1644 aaKnown RBP17.76■□□□□ 0.43
SYNE1-222ENST00000474655 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.73■□□□□ 0.43
SYNE1-222ENST00000474655 TTC37Q6PGP7 1564 aa17.72■□□□□ 0.43
SYNE1-222ENST00000474655 SAMD9LQ8IVG5 1584 aa17.72■□□□□ 0.43
SYNE1-222ENST00000474655 MYO5CQ9NQX4 1742 aa17.71■□□□□ 0.43
SYNE1-222ENST00000474655 MBD5Q9P267 1494 aa17.71■□□□□ 0.43
SYNE1-222ENST00000474655 NEUROD1Q13562 356 aa17.7■□□□□ 0.42
SYNE1-222ENST00000474655 ZNF777Q9ULD5 760 aaPredicted RBP17.7■□□□□ 0.42
SYNE1-222ENST00000474655 ANKRD30AQ9BXX3 1397 aa17.69■□□□□ 0.42
SYNE1-222ENST00000474655 PPP1R15AO75807 674 aaPredicted RBP17.68■□□□□ 0.42
SYNE1-222ENST00000474655 MPHOSPH9Q99550 1183 aa17.67■□□□□ 0.42
SYNE1-222ENST00000474655 C9orf84Q5VXU9 1444 aa17.67■□□□□ 0.42
SYNE1-222ENST00000474655 RSPH4AQ5TD94 716 aa17.66■□□□□ 0.42
SYNE1-222ENST00000474655 TRIM52Q96A61 297 aa17.66■□□□□ 0.42
SYNE1-222ENST00000474655 CCDC141Q6ZP82 1450 aa17.65■□□□□ 0.42
SYNE1-222ENST00000474655 MAST1Q9Y2H9 1570 aa17.64■□□□□ 0.41
SYNE1-222ENST00000474655 TONSLQ96HA7 1378 aa17.64■□□□□ 0.41
SYNE1-222ENST00000474655 KIAA1107Q9UPP5 1409 aa17.63■□□□□ 0.41
SYNE1-222ENST00000474655 PLEKHH2Q8IVE3 1493 aa17.63■□□□□ 0.41
SYNE1-222ENST00000474655 ARHGAP5Q13017 1502 aa17.63■□□□□ 0.41
SYNE1-222ENST00000474655 PZPP20742 1482 aa17.62■□□□□ 0.41
SYNE1-222ENST00000474655 PLCH2O75038 1416 aa17.62■□□□□ 0.41
SYNE1-222ENST00000474655 ANKRD50Q9ULJ7 1429 aa17.62■□□□□ 0.41
SYNE1-222ENST00000474655 ARAP3Q8WWN8 1544 aa17.61■□□□□ 0.41
SYNE1-222ENST00000474655 TSPY4P0CV99 314 aa17.61■□□□□ 0.41
SYNE1-222ENST00000474655 TSPY10P0CW01 314 aa17.61■□□□□ 0.41
SYNE1-222ENST00000474655 OSCARQ8IYS5 282 aa17.61■□□□□ 0.41
SYNE1-222ENST00000474655 ANKRD30BQ9BXX2 1392 aa17.6■□□□□ 0.41
SYNE1-222ENST00000474655 SYCP2Q9BX26 1530 aa17.6■□□□□ 0.41
SYNE1-222ENST00000474655 HNRNPMP52272 730 aaKnown RBP eCLIP17.59■□□□□ 0.41
SYNE1-222ENST00000474655 KDM5DQ9BY66 1539 aa17.59■□□□□ 0.41
SYNE1-222ENST00000474655 RPRD2Q5VT52 1461 aaKnown RBP17.57■□□□□ 0.4
SYNE1-222ENST00000474655 PLXNC1O60486 1568 aa17.56■□□□□ 0.4
SYNE1-222ENST00000474655 WDR7Q9Y4E6 1490 aa17.56■□□□□ 0.4
SYNE1-222ENST00000474655 KIF15Q9NS87 1388 aa17.55■□□□□ 0.4
SYNE1-222ENST00000474655 SLC4A1APQ9BWU0 796 aaKnown RBP17.55■□□□□ 0.4
SYNE1-222ENST00000474655 ABCA9Q8IUA7 1624 aa17.54■□□□□ 0.4
SYNE1-222ENST00000474655 ABCC1P33527 1531 aa17.54■□□□□ 0.4
SYNE1-222ENST00000474655 KCNH8Q96L42 1107 aa17.53■□□□□ 0.4
SYNE1-222ENST00000474655 ARHGEF12Q9NZN5 1544 aa17.53■□□□□ 0.4
SYNE1-222ENST00000474655 EFCAB2Q5VUJ9 269 aa17.51■□□□□ 0.39
SYNE1-222ENST00000474655 MIER1Q8N108 512 aa17.5■□□□□ 0.39
SYNE1-222ENST00000474655 TEX14Q8IWB6 1497 aa17.49■□□□□ 0.39
SYNE1-222ENST00000474655 FOXD1Q16676 465 aa17.49■□□□□ 0.39
SYNE1-222ENST00000474655 UNC13BO14795 1591 aa17.49■□□□□ 0.39
SYNE1-222ENST00000474655 ASXL2Q76L83 1435 aa17.46■□□□□ 0.39
SYNE1-222ENST00000474655 DUOX2Q9NRD8 1548 aa17.46■□□□□ 0.39
SYNE1-222ENST00000474655 NUP155O75694 1391 aa17.46■□□□□ 0.39
SYNE1-222ENST00000474655 L3MBTL2Q969R5 705 aa17.44■□□□□ 0.38
SYNE1-222ENST00000474655 PKD2Q13563 968 aa17.43■□□□□ 0.38
SYNE1-222ENST00000474655 RTEL1-TNFRSF6BF6WH68 1400 aa17.43■□□□□ 0.38
SYNE1-222ENST00000474655 FAM135AQ9P2D6 1515 aa17.43■□□□□ 0.38
SYNE1-222ENST00000474655 ERBINQ96RT1 1412 aa17.42■□□□□ 0.38
SYNE1-222ENST00000474655 TRAPPC8Q9Y2L5 1435 aa17.42■□□□□ 0.38
SYNE1-222ENST00000474655 MAGI2Q86UL8 1455 aa17.42■□□□□ 0.38
SYNE1-222ENST00000474655 IQGAP3Q86VI3 1631 aa17.42■□□□□ 0.38
SYNE1-222ENST00000474655 FANCAO15360 1455 aa17.4■□□□□ 0.38
SYNE1-222ENST00000474655 ZFYVE16Q7Z3T8 1539 aa17.39■□□□□ 0.37
SYNE1-222ENST00000474655 INO80Q9ULG1 1556 aaPredicted RBP17.37■□□□□ 0.37
SYNE1-222ENST00000474655 NPM1P06748 294 aaKnown RBP eCLIP17.35■□□□□ 0.37
SYNE1-222ENST00000474655 CFAP74Q9C0B2 1584 aa17.33■□□□□ 0.37
SYNE1-222ENST00000474655 ADGRL1O94910 1474 aa17.33■□□□□ 0.36
SYNE1-222ENST00000474655 SPAG9O60271 1321 aaKnown RBP17.33■□□□□ 0.36
SYNE1-222ENST00000474655 ATP7AQ04656 1500 aa17.33■□□□□ 0.36
SYNE1-222ENST00000474655 NBPF8Q3BBV2 869 aa17.33■□□□□ 0.36
SYNE1-222ENST00000474655 DEPDC5O75140 1603 aa17.33■□□□□ 0.36
SYNE1-222ENST00000474655 ATP10AO60312 1499 aa17.31■□□□□ 0.36
SYNE1-222ENST00000474655 UHRF1BP1Q6BDS2 1440 aa17.31■□□□□ 0.36
SYNE1-222ENST00000474655 AFAP1Q8N556 730 aa17.3■□□□□ 0.36
SYNE1-222ENST00000474655 HIRIP3Q9BW71 556 aaPredicted RBP17.3■□□□□ 0.36
SYNE1-222ENST00000474655 SCAPERQ9BY12 1400 aa17.3■□□□□ 0.36
SYNE1-222ENST00000474655 CENPBP07199 599 aaPredicted RBP17.3■□□□□ 0.36
SYNE1-222ENST00000474655 EIF2AK4Q9P2K8 1649 aaKnown RBP17.29■□□□□ 0.36
SYNE1-222ENST00000474655 EIF4G2P78344 907 aaKnown RBP eCLIP17.29■□□□□ 0.36
SYNE1-222ENST00000474655 DDX10Q13206 875 aaKnown RBP17.29■□□□□ 0.36
SYNE1-222ENST00000474655 POLR1AO95602 1720 aaPredicted RBP17.29■□□□□ 0.36
SYNE1-222ENST00000474655 HSPA5P11021 654 aaKnown RBP17.28■□□□□ 0.36
SYNE1-222ENST00000474655 SPATA31E1Q6ZUB1 1445 aa17.28■□□□□ 0.36
SYNE1-222ENST00000474655 PLA2R1Q13018 1463 aa17.28■□□□□ 0.36
SYNE1-222ENST00000474655 KIDINS220Q9ULH0 1771 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms