RNA–Protein interactions for RNA: ENST00000474572.6

USP39-214, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 293 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-214ENST00000474572 ADGRL2O95490 1459 aa14.33□□□□□ -0.12
USP39-214ENST00000474572 ACIN1Q9UKV3 1341 aaKnown RBP14.33□□□□□ -0.12
USP39-214ENST00000474572 DENND4BO75064 1496 aaPredicted RBP14.31□□□□□ -0.12
USP39-214ENST00000474572 ARID3CA6NKF2 412 aa14.31□□□□□ -0.12
USP39-214ENST00000474572 ABCC2Q92887 1545 aa14.31□□□□□ -0.12
USP39-214ENST00000474572 ERCC6L2Q5T890 1561 aa14.3□□□□□ -0.12
USP39-214ENST00000474572 PREX2Q70Z35 1606 aa14.3□□□□□ -0.12
USP39-214ENST00000474572 SHANK2Q9UPX8 1470 aa14.29□□□□□ -0.12
USP39-214ENST00000474572 ARHGEF5Q12774 1597 aa14.28□□□□□ -0.12
USP39-214ENST00000474572 CDC42BPBQ9Y5S2 1711 aa14.27□□□□□ -0.12
USP39-214ENST00000474572 UHRF1BP1LA0JNW5 1464 aa14.27□□□□□ -0.12
USP39-214ENST00000474572 KDM5BQ9UGL1 1544 aa14.25□□□□□ -0.13
USP39-214ENST00000474572 PLEKHD1A6NEE1 506 aa14.25□□□□□ -0.13
USP39-214ENST00000474572 SIN3AQ96ST3 1273 aa14.25□□□□□ -0.13
USP39-214ENST00000474572 ZNF644Q9H582 1327 aaPredicted RBP14.24□□□□□ -0.13
USP39-214ENST00000474572 RRP7BPQ9NSQ0 103 aa14.23□□□□□ -0.13
USP39-214ENST00000474572 CFDP1Q9UEE9 299 aaPredicted RBP14.23□□□□□ -0.13
USP39-214ENST00000474572 NCOA1Q15788 1441 aa14.23□□□□□ -0.13
USP39-214ENST00000474572 ZCCHC11Q5TAX3 1644 aaKnown RBP14.23□□□□□ -0.13
USP39-214ENST00000474572 SAMD9LQ8IVG5 1584 aa14.22□□□□□ -0.13
USP39-214ENST00000474572 CHIC2Q9UKJ5 165 aa14.21□□□□□ -0.13
USP39-214ENST00000474572 TTC37Q6PGP7 1564 aa14.21□□□□□ -0.14
USP39-214ENST00000474572 MAST1Q9Y2H9 1570 aa14.21□□□□□ -0.14
USP39-214ENST00000474572 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.2□□□□□ -0.14
USP39-214ENST00000474572 PPP1R15AO75807 674 aaPredicted RBP14.2□□□□□ -0.14
USP39-214ENST00000474572 MYO5CQ9NQX4 1742 aa14.2□□□□□ -0.14
USP39-214ENST00000474572 KDM5DQ9BY66 1539 aa14.19□□□□□ -0.14
USP39-214ENST00000474572 MBD5Q9P267 1494 aa14.18□□□□□ -0.14
USP39-214ENST00000474572 PZPP20742 1482 aa14.18□□□□□ -0.14
USP39-214ENST00000474572 NEUROD1Q13562 356 aa14.17□□□□□ -0.14
USP39-214ENST00000474572 TONSLQ96HA7 1378 aa14.17□□□□□ -0.14
USP39-214ENST00000474572 ANKRD30AQ9BXX3 1397 aa14.16□□□□□ -0.14
USP39-214ENST00000474572 C9orf84Q5VXU9 1444 aa14.15□□□□□ -0.14
USP39-214ENST00000474572 CCDC141Q6ZP82 1450 aa14.15□□□□□ -0.14
USP39-214ENST00000474572 MPHOSPH9Q99550 1183 aa14.14□□□□□ -0.15
USP39-214ENST00000474572 RPRD2Q5VT52 1461 aaKnown RBP14.13□□□□□ -0.15
USP39-214ENST00000474572 ANKRD30BQ9BXX2 1392 aa14.13□□□□□ -0.15
USP39-214ENST00000474572 PLXNC1O60486 1568 aa14.13□□□□□ -0.15
USP39-214ENST00000474572 PLEKHH2Q8IVE3 1493 aa14.12□□□□□ -0.15
USP39-214ENST00000474572 ARAP3Q8WWN8 1544 aa14.12□□□□□ -0.15
USP39-214ENST00000474572 MIER1Q8N108 512 aa14.11□□□□□ -0.15
USP39-214ENST00000474572 ANKRD50Q9ULJ7 1429 aa14.11□□□□□ -0.15
USP39-214ENST00000474572 KIAA1107Q9UPP5 1409 aa14.11□□□□□ -0.15
USP39-214ENST00000474572 TEX14Q8IWB6 1497 aa14.11□□□□□ -0.15
USP39-214ENST00000474572 SYCP2Q9BX26 1530 aa14.1□□□□□ -0.15
USP39-214ENST00000474572 TRIM52Q96A61 297 aa14.1□□□□□ -0.15
USP39-214ENST00000474572 ARHGAP5Q13017 1502 aa14.1□□□□□ -0.15
USP39-214ENST00000474572 RSPH4AQ5TD94 716 aa14.09□□□□□ -0.15
USP39-214ENST00000474572 ZNF777Q9ULD5 760 aaPredicted RBP14.08□□□□□ -0.16
USP39-214ENST00000474572 ABCC1P33527 1531 aa14.08□□□□□ -0.16
USP39-214ENST00000474572 UNC13BO14795 1591 aa14.08□□□□□ -0.16
USP39-214ENST00000474572 PLCH2O75038 1416 aa14.07□□□□□ -0.16
USP39-214ENST00000474572 KIF15Q9NS87 1388 aa14.05□□□□□ -0.16
USP39-214ENST00000474572 ABCA9Q8IUA7 1624 aa14.04□□□□□ -0.16
USP39-214ENST00000474572 TSPY4P0CV99 314 aa14.03□□□□□ -0.16
USP39-214ENST00000474572 TSPY10P0CW01 314 aa14.03□□□□□ -0.16
USP39-214ENST00000474572 WDR7Q9Y4E6 1490 aa14.03□□□□□ -0.16
USP39-214ENST00000474572 ARHGEF12Q9NZN5 1544 aa14.03□□□□□ -0.16
USP39-214ENST00000474572 MAGI2Q86UL8 1455 aa14.02□□□□□ -0.16
USP39-214ENST00000474572 CENPBP07199 599 aaPredicted RBP14.02□□□□□ -0.17
USP39-214ENST00000474572 HNRNPMP52272 730 aaKnown RBP eCLIP14.02□□□□□ -0.17
USP39-214ENST00000474572 SLC4A1APQ9BWU0 796 aaKnown RBP14.02□□□□□ -0.17
USP39-214ENST00000474572 IQGAP3Q86VI3 1631 aa14.01□□□□□ -0.17
USP39-214ENST00000474572 DUOX2Q9NRD8 1548 aa14□□□□□ -0.17
USP39-214ENST00000474572 POLR1AO95602 1720 aaPredicted RBP14□□□□□ -0.17
USP39-214ENST00000474572 FAM135AQ9P2D6 1515 aa13.99□□□□□ -0.17
USP39-214ENST00000474572 FOXD1Q16676 465 aa13.98□□□□□ -0.17
USP39-214ENST00000474572 L3MBTL2Q969R5 705 aa13.98□□□□□ -0.17
USP39-214ENST00000474572 ERBINQ96RT1 1412 aa13.98□□□□□ -0.17
USP39-214ENST00000474572 RTEL1-TNFRSF6BF6WH68 1400 aa13.96□□□□□ -0.18
USP39-214ENST00000474572 INO80Q9ULG1 1556 aaPredicted RBP13.96□□□□□ -0.18
USP39-214ENST00000474572 NUP155O75694 1391 aa13.96□□□□□ -0.18
USP39-214ENST00000474572 ZFYVE16Q7Z3T8 1539 aa13.95□□□□□ -0.18
USP39-214ENST00000474572 EFCAB2Q5VUJ9 269 aa13.94□□□□□ -0.18
USP39-214ENST00000474572 UHRF1BP1Q6BDS2 1440 aa13.94□□□□□ -0.18
USP39-214ENST00000474572 DEPDC5O75140 1603 aa13.93□□□□□ -0.18
USP39-214ENST00000474572 PKD2Q13563 968 aa13.93□□□□□ -0.18
USP39-214ENST00000474572 SCAF1Q9H7N4 1312 aaKnown RBP13.92□□□□□ -0.18
USP39-214ENST00000474572 SPATA31E1Q6ZUB1 1445 aa13.92□□□□□ -0.18
USP39-214ENST00000474572 TRAPPC8Q9Y2L5 1435 aa13.92□□□□□ -0.18
USP39-214ENST00000474572 ASXL2Q76L83 1435 aa13.91□□□□□ -0.18
USP39-214ENST00000474572 OSCARQ8IYS5 282 aa13.91□□□□□ -0.18
USP39-214ENST00000474572 ATP10AO60312 1499 aa13.91□□□□□ -0.18
USP39-214ENST00000474572 NBPF8Q3BBV2 869 aa13.9□□□□□ -0.18
USP39-214ENST00000474572 KCNH8Q96L42 1107 aa13.9□□□□□ -0.18
USP39-214ENST00000474572 CFAP74Q9C0B2 1584 aa13.9□□□□□ -0.18
USP39-214ENST00000474572 EIF2AK4Q9P2K8 1649 aaKnown RBP13.9□□□□□ -0.19
USP39-214ENST00000474572 FANCAO15360 1455 aa13.89□□□□□ -0.19
USP39-214ENST00000474572 RALGAPBQ86X10 1494 aa13.89□□□□□ -0.19
USP39-214ENST00000474572 HSPA5P11021 654 aaKnown RBP13.89□□□□□ -0.19
USP39-214ENST00000474572 DDX10Q13206 875 aaKnown RBP13.89□□□□□ -0.19
USP39-214ENST00000474572 KDM5CP41229 1560 aa13.88□□□□□ -0.19
USP39-214ENST00000474572 EIF4G2P78344 907 aaKnown RBP eCLIP13.88□□□□□ -0.19
USP39-214ENST00000474572 ATP7AQ04656 1500 aa13.88□□□□□ -0.19
USP39-214ENST00000474572 VWDEQ8N2E2 1590 aa13.87□□□□□ -0.19
USP39-214ENST00000474572 HIRIP3Q9BW71 556 aaPredicted RBP13.86□□□□□ -0.19
USP39-214ENST00000474572 PLA2R1Q13018 1463 aa13.86□□□□□ -0.19
USP39-214ENST00000474572 LAMC1P11047 1609 aa13.84□□□□□ -0.19
USP39-214ENST00000474572 ADGRL1O94910 1474 aa13.84□□□□□ -0.19
USP39-214ENST00000474572 E9PCH4 1651 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms