RNA–Protein interactions for RNA: ENST00000471702.2

NPHP3-ACAD11-201, Transcript of NPHP3-ACAD11 readthrough (NMD candidate), humanhuman

TSL 2 BASIC

Gene NPHP3-ACAD11, Length 7,784 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-ACAD11-201ENST00000471702 HSCBQ8IWL3 235 aa16.83■□□□□ 0.29
NPHP3-ACAD11-201ENST00000471702 MCCP23508 829 aa16.83■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 GORABQ5T7V8 394 aa16.83■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 KIAA1211Q6ZU35 1233 aa16.83■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 MSNP26038 577 aaKnown RBP16.82■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 TAF7LQ5H9L4 462 aa16.82■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 HSP90B1P14625 803 aaKnown RBP16.79■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 CEP89Q96ST8 783 aa16.79■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 FRAT2O75474 233 aaPredicted RBP16.78■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 RASSF8Q8NHQ8 419 aa16.78■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 DCAF11Q8TEB1 546 aa16.77■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 CHMP4BQ9H444 224 aaKnown RBP16.77■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 GGT6Q6P531 493 aa16.77■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 GZF1Q9H116 711 aaPredicted RBP16.77■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 ZCCHC6Q5VYS8 1495 aaKnown RBP16.77■□□□□ 0.28
NPHP3-ACAD11-201ENST00000471702 GTF2E1P29083 439 aaPredicted RBP16.75■□□□□ 0.27
NPHP3-ACAD11-201ENST00000471702 MORC1Q86VD1 984 aa16.74■□□□□ 0.27
NPHP3-ACAD11-201ENST00000471702 MSH5O43196 834 aa16.74■□□□□ 0.27
NPHP3-ACAD11-201ENST00000471702 CALRP27797 417 aaKnown RBP16.74■□□□□ 0.27
NPHP3-ACAD11-201ENST00000471702 NUTM2FA1L443 756 aa16.73■□□□□ 0.27
NPHP3-ACAD11-201ENST00000471702 TOMM22Q9NS69 142 aa16.72■□□□□ 0.27
NPHP3-ACAD11-201ENST00000471702 MS4A1P11836 297 aa16.72■□□□□ 0.27
NPHP3-ACAD11-201ENST00000471702 NOL8Q76FK4 1167 aaKnown RBP16.71■□□□□ 0.27
NPHP3-ACAD11-201ENST00000471702 HDGFP51858 240 aaKnown RBP16.71■□□□□ 0.27
NPHP3-ACAD11-201ENST00000471702 TRIM6-TRIM34B2RNG4 842 aa16.71■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 ERCC6Q03468 1493 aa16.7■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 RAD21O60216 631 aa16.7■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 SIN3AQ96ST3 1273 aa16.7■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 DCAF8L1A6NGE4 600 aa16.7■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 LTV1Q96GA3 475 aaPredicted RBP16.7■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 PES1O00541 588 aaKnown RBP16.69■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 MARCH6O60337 910 aa16.69■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 NOP58Q9Y2X3 529 aaKnown RBP16.69■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 RSF1Q96T23 1441 aaPredicted RBP16.68■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 SLC4A10Q6U841 1118 aa16.67■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 TMF1P82094 1093 aa16.67■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 CLIP1P30622 1438 aa16.67■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 KLHL34Q8N239 644 aa16.67■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 TNNT3P45378 269 aaPredicted RBP16.66■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 ITPRIPQ8IWB1 547 aa16.65■□□□□ 0.26
NPHP3-ACAD11-201ENST00000471702 SLKQ9H2G2 1235 aaPredicted RBP16.64■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 GOLGA6L1Q8N7Z2 621 aa16.63■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 PATL2C9JE40 543 aaKnown RBP16.63■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 NUTM2DQ5VT03 806 aaPredicted RBP16.63■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 U2AF1L5P0DN76 240 aaPredicted RBP16.63■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 U2AF1Q01081 240 aaKnown RBP eCLIP16.63■□□□□ 0.252e-8■■□□□ 14.2
NPHP3-ACAD11-201ENST00000471702 FOXD4L1Q9NU39 408 aa16.62■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 FOXD4L5Q5VV16 416 aaPredicted RBP16.62■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 FOXD4L4Q8WXT5 416 aaPredicted RBP16.62■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 KANK1Q14678 1352 aa16.61■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 PPP4R2Q9NY27 417 aa16.61■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 HDGFL2Q7Z4V5 671 aaPredicted RBP16.61■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 PHF23Q9BUL5 403 aaPredicted RBP16.61■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 SAMD1Q6SPF0 538 aaPredicted RBP16.59■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 CWC22Q9HCG8 908 aaKnown RBP16.59■□□□□ 0.25
NPHP3-ACAD11-201ENST00000471702 NGEFQ8N5V2 710 aa16.57■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 TCEAL9Q9UHQ7 104 aa16.57■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 GPATCH3Q96I76 525 aa16.57■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 VSIG10Q8N0Z9 540 aa16.57■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 TPM4P67936 248 aa16.56■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 FOXD1Q16676 465 aa16.56■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 FOXD4L6Q3SYB3 417 aaPredicted RBP16.56■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 FOXD4L3Q6VB84 417 aaPredicted RBP16.56■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 SPAG9O60271 1321 aaKnown RBP16.56■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 STK31Q9BXU1 1019 aa16.56■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 NGDNQ8NEJ9 315 aaKnown RBP16.55■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 EIF4G1Q04637 1599 aaKnown RBP16.55■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 IPO8O15397 1037 aaKnown RBP16.55■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.55■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 FBXW7Q969H0 707 aa16.55■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 MFAP1P55081 439 aaKnown RBP16.54■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 EVA1CP58658 441 aa16.54■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.53■□□□□ 0.246e-9■■■■■ 29.3
NPHP3-ACAD11-201ENST00000471702 SYTL4Q96C24 671 aaPredicted RBP16.53■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 CCDC34Q96HJ3 373 aa16.53■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 HTATSF1O43719 755 aaKnown RBP16.52■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 AMPHP49418 695 aa16.52■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 SF3A1Q15459 793 aaKnown RBP16.52■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 TPD52L1Q16890 204 aaPredicted RBP16.52■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 RRP12Q5JTH9 1297 aaKnown RBP16.52■□□□□ 0.24
NPHP3-ACAD11-201ENST00000471702 CLUAP1Q96AJ1 413 aa16.52■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 CTDP1Q9Y5B0 961 aaPredicted RBP16.51■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 AEBP2Q6ZN18 517 aaPredicted RBP16.51■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 CCAR2Q8N163 923 aaKnown RBP16.51■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 GBP4Q96PP9 640 aa16.5■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 TRIM34Q9BYJ4 488 aa16.5■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.49■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.49■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 SMC4Q9NTJ3 1288 aa16.49■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 MEX3CQ5U5Q3 659 aaKnown RBP16.48■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 DEKP35659 375 aaKnown RBP16.48■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 SETQ01105 290 aaPredicted RBP16.48■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 AK7Q96M32 723 aa16.48■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 USP35Q9P2H5 1018 aa16.48■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 TPM3P06753 285 aa16.48■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 PAF1Q8N7H5 531 aa16.48■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 CCDC146Q8IYE0 955 aa16.47■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 CCNB3Q8WWL7 1395 aa16.47■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 SYAP1Q96A49 352 aaPredicted RBP16.46■□□□□ 0.23
NPHP3-ACAD11-201ENST00000471702 CFAP44Q96MT7 982 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms