RNA–Protein interactions for RNA: ENST00000470537.1

XRN1-208, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 2

Gene XRN1, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-208ENST00000470537 WDR7Q9Y4E6 1490 aa15.2■□□□□ 0.02
XRN1-208ENST00000470537 PRKAR2AP13861 404 aaKnown RBP15.19■□□□□ 0.02
XRN1-208ENST00000470537 ZCCHC11Q5TAX3 1644 aaKnown RBP15.18■□□□□ 0.02
XRN1-208ENST00000470537 GOLGA3Q08378 1498 aa15.18■□□□□ 0.02
XRN1-208ENST00000470537 CD109Q6YHK3 1445 aa15.17■□□□□ 0.02
XRN1-208ENST00000470537 KCNH8Q96L42 1107 aa15.17■□□□□ 0.02
XRN1-208ENST00000470537 KIAA0556O60303 1618 aa15.16■□□□□ 0.02
XRN1-208ENST00000470537 MAGI3Q5TCQ9 1506 aa15.15■□□□□ 0.02
XRN1-208ENST00000470537 HECW2Q9P2P5 1572 aa15.15■□□□□ 0.02
XRN1-208ENST00000470537 CSRNP3Q8WYN3 585 aa15.13■□□□□ 0.01
XRN1-208ENST00000470537 CFAP43Q8NDM7 1665 aa15.11■□□□□ 0.01
XRN1-208ENST00000470537 PHLDB1Q86UU1 1377 aa15.11■□□□□ 0.01
XRN1-208ENST00000470537 EVX2Q03828 476 aa15.1■□□□□ 0.01
XRN1-208ENST00000470537 FBXO41Q8TF61 875 aa15.05■□□□□ -0
XRN1-208ENST00000470537 ARAP3Q8WWN8 1544 aa15.05■□□□□ -0
XRN1-208ENST00000470537 CTTNBP2Q8WZ74 1663 aa15.04■□□□□ -0
XRN1-208ENST00000470537 ABCA8O94911 1581 aa15.04■□□□□ -0
XRN1-208ENST00000470537 PRR29P0C7W0 189 aa15□□□□□ -0.01
XRN1-208ENST00000470537 CHADLQ6NUI6 762 aa14.98□□□□□ -0.01
XRN1-208ENST00000470537 ARID4BQ4LE39 1312 aaPredicted RBP14.97□□□□□ -0.01
XRN1-208ENST00000470537 ATP10BO94823 1461 aa14.96□□□□□ -0.01
XRN1-208ENST00000470537 PRXQ9BXM0 1461 aa14.96□□□□□ -0.01
XRN1-208ENST00000470537 KIF21BO75037 1637 aa14.96□□□□□ -0.01
XRN1-208ENST00000470537 C19orf67A6NJJ6 358 aa14.96□□□□□ -0.01
XRN1-208ENST00000470537 NEO1Q92859 1461 aa14.95□□□□□ -0.02
XRN1-208ENST00000470537 ARID3CA6NKF2 412 aa14.95□□□□□ -0.02
XRN1-208ENST00000470537 P3H3Q8IVL6 736 aa14.95□□□□□ -0.02
XRN1-208ENST00000470537 PTPRMP28827 1452 aa14.95□□□□□ -0.02
XRN1-208ENST00000470537 RAPGEF3O95398 923 aa14.94□□□□□ -0.02
XRN1-208ENST00000470537 EHMT2Q96KQ7 1210 aa14.94□□□□□ -0.02
XRN1-208ENST00000470537 ABCA9Q8IUA7 1624 aa14.92□□□□□ -0.02
XRN1-208ENST00000470537 PLEKHD1A6NEE1 506 aa14.91□□□□□ -0.02
XRN1-208ENST00000470537 ADAMTSL3P82987 1691 aa14.9□□□□□ -0.02
XRN1-208ENST00000470537 POGZQ7Z3K3 1410 aa14.87□□□□□ -0.03
XRN1-208ENST00000470537 RAPGEF6Q8TEU7 1601 aa14.84□□□□□ -0.03
XRN1-208ENST00000470537 DENND4BO75064 1496 aaPredicted RBP14.84□□□□□ -0.03
XRN1-208ENST00000470537 BCORL1Q5H9F3 1711 aa14.84□□□□□ -0.03
XRN1-208ENST00000470537 PCF11O94913 1555 aaKnown RBP14.84□□□□□ -0.03
XRN1-208ENST00000470537 AKNAQ7Z591 1439 aa14.81□□□□□ -0.04
XRN1-208ENST00000470537 SAMD9Q5K651 1589 aa14.81□□□□□ -0.04
XRN1-208ENST00000470537 FHOD3Q2V2M9 1422 aa14.8□□□□□ -0.04
XRN1-208ENST00000470537 FANCAO15360 1455 aa14.8□□□□□ -0.04
XRN1-208ENST00000470537 LMTK3Q96Q04 1460 aa14.8□□□□□ -0.04
XRN1-208ENST00000470537 MADDQ8WXG6 1647 aa14.79□□□□□ -0.04
XRN1-208ENST00000470537 CFAP74Q9C0B2 1584 aa14.79□□□□□ -0.04
XRN1-208ENST00000470537 NUP153P49790 1475 aaKnown RBP14.78□□□□□ -0.04
XRN1-208ENST00000470537 MAGI2Q86UL8 1455 aa14.78□□□□□ -0.04
XRN1-208ENST00000470537 GABBR2O75899 941 aa14.78□□□□□ -0.04
XRN1-208ENST00000470537 RANGAP1P46060 587 aaPredicted RBP14.78□□□□□ -0.04
XRN1-208ENST00000470537 EEA1Q15075 1411 aa14.77□□□□□ -0.04
XRN1-208ENST00000470537 ARHGEF40Q8TER5 1519 aa14.76□□□□□ -0.05
XRN1-208ENST00000470537 FRMPD1Q5SYB0 1578 aa14.76□□□□□ -0.05
XRN1-208ENST00000470537 CERKQ8TCT0 537 aa14.75□□□□□ -0.05
XRN1-208ENST00000470537 FARP1Q9Y4F1 1045 aaPredicted RBP14.75□□□□□ -0.05
XRN1-208ENST00000470537 EFCAB5A4FU69 1503 aa14.75□□□□□ -0.05
XRN1-208ENST00000470537 HSPA2P54652 639 aa14.74□□□□□ -0.05
XRN1-208ENST00000470537 CDK11AQ9UQ88 783 aaPredicted RBP14.74□□□□□ -0.05
XRN1-208ENST00000470537 RIMS1Q86UR5 1692 aaKnown RBP14.74□□□□□ -0.05
XRN1-208ENST00000470537 RICTORQ6R327 1708 aa14.72□□□□□ -0.05
XRN1-208ENST00000470537 ZMYM4Q5VZL5 1548 aa14.71□□□□□ -0.05
XRN1-208ENST00000470537 ZFYVE16Q7Z3T8 1539 aa14.71□□□□□ -0.05
XRN1-208ENST00000470537 CD44P16070 742 aaKnown RBP14.71□□□□□ -0.05
XRN1-208ENST00000470537 MLECQ14165 292 aa14.71□□□□□ -0.05
XRN1-208ENST00000470537 EFCAB2Q5VUJ9 269 aa14.71□□□□□ -0.05
XRN1-208ENST00000470537 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.71□□□□□ -0.06
XRN1-208ENST00000470537 SCAPERQ9BY12 1400 aa14.69□□□□□ -0.06
XRN1-208ENST00000470537 PLCH2O75038 1416 aa14.68□□□□□ -0.06
XRN1-208ENST00000470537 ATP10AO60312 1499 aa14.67□□□□□ -0.06
XRN1-208ENST00000470537 YEATS2Q9ULM3 1422 aa14.66□□□□□ -0.06
XRN1-208ENST00000470537 ATP1B4Q9UN42 357 aaPredicted RBP14.66□□□□□ -0.06
XRN1-208ENST00000470537 SPDYE4A6NLX3 237 aa14.65□□□□□ -0.06
XRN1-208ENST00000470537 ESF1Q9H501 851 aaKnown RBP14.65□□□□□ -0.06
XRN1-208ENST00000470537 MYT1LQ9UL68 1186 aa14.65□□□□□ -0.06
XRN1-208ENST00000470537 HECW1Q76N89 1606 aa14.64□□□□□ -0.07
XRN1-208ENST00000470537 STAG3Q9UJ98 1225 aa14.64□□□□□ -0.07
XRN1-208ENST00000470537 C9orf84Q5VXU9 1444 aa14.64□□□□□ -0.07
XRN1-208ENST00000470537 FER1L4A9Z1Z3 1794 aa14.63□□□□□ -0.07
XRN1-208ENST00000470537 FMN1Q68DA7 1419 aa14.63□□□□□ -0.07
XRN1-208ENST00000470537 TTC37Q6PGP7 1564 aa14.63□□□□□ -0.07
XRN1-208ENST00000470537 SETD1BQ9UPS6 1966 aaKnown RBP14.62□□□□□ -0.07
XRN1-208ENST00000470537 UBTFP17480 764 aaKnown RBP14.61□□□□□ -0.07
XRN1-208ENST00000470537 ZNF518AQ6AHZ1 1483 aa14.6□□□□□ -0.07
XRN1-208ENST00000470537 ARHGEF12Q9NZN5 1544 aa14.6□□□□□ -0.07
XRN1-208ENST00000470537 UHRF1BP1Q6BDS2 1440 aa14.59□□□□□ -0.07
XRN1-208ENST00000470537 PREX1Q8TCU6 1659 aa14.58□□□□□ -0.07
XRN1-208ENST00000470537 CLIP1P30622 1438 aa14.58□□□□□ -0.07
XRN1-208ENST00000470537 CEBPAP49715 358 aaPredicted RBP14.58□□□□□ -0.08
XRN1-208ENST00000470537 CDK13Q14004 1512 aaKnown RBP14.57□□□□□ -0.08
XRN1-208ENST00000470537 AFAP1Q8N556 730 aa14.57□□□□□ -0.08
XRN1-208ENST00000470537 DISP3Q9P2K9 1392 aa14.57□□□□□ -0.08
XRN1-208ENST00000470537 MYO5CQ9NQX4 1742 aa14.56□□□□□ -0.08
XRN1-208ENST00000470537 CREBZFQ9NS37 354 aa14.55□□□□□ -0.08
XRN1-208ENST00000470537 ARHGAP5Q13017 1502 aa14.54□□□□□ -0.08
XRN1-208ENST00000470537 SIGLEC1Q9BZZ2 1709 aa14.53□□□□□ -0.08
XRN1-208ENST00000470537 KIF14Q15058 1648 aa14.53□□□□□ -0.08
XRN1-208ENST00000470537 TROQ12816 1431 aaPredicted RBP14.53□□□□□ -0.08
XRN1-208ENST00000470537 SOCS7O14512 581 aa14.53□□□□□ -0.08
XRN1-208ENST00000470537 PTPRTO14522 1441 aa14.52□□□□□ -0.08
XRN1-208ENST00000470537 MLH3Q9UHC1 1453 aa14.5□□□□□ -0.09
XRN1-208ENST00000470537 TRAPPC8Q9Y2L5 1435 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms