RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 POGZQ7Z3K3 1410 aa21.56■■□□□ 1.04
CPSF4-210ENST00000469897 RICTORQ6R327 1708 aa21.56■■□□□ 1.04
CPSF4-210ENST00000469897 CASKIN1Q8WXD9 1431 aa21.55■■□□□ 1.04
CPSF4-210ENST00000469897 ZFYVE16Q7Z3T8 1539 aa21.55■■□□□ 1.04
CPSF4-210ENST00000469897 ARHGEF40Q8TER5 1519 aa21.54■■□□□ 1.04
CPSF4-210ENST00000469897 BCORL1Q5H9F3 1711 aa21.53■■□□□ 1.04
CPSF4-210ENST00000469897 ZMYM4Q5VZL5 1548 aa21.53■■□□□ 1.04
CPSF4-210ENST00000469897 KIF14Q15058 1648 aa21.52■■□□□ 1.04
CPSF4-210ENST00000469897 ATP10AO60312 1499 aa21.51■■□□□ 1.03
CPSF4-210ENST00000469897 MADDQ8WXG6 1647 aa21.51■■□□□ 1.03
CPSF4-210ENST00000469897 ARHGAP5Q13017 1502 aa21.5■■□□□ 1.03
CPSF4-210ENST00000469897 HSPA2P54652 639 aa21.47■■□□□ 1.03
CPSF4-210ENST00000469897 ZNF777Q9ULD5 760 aaPredicted RBP21.47■■□□□ 1.03
CPSF4-210ENST00000469897 CCDC18Q5T9S5 1454 aa21.45■■□□□ 1.03
CPSF4-210ENST00000469897 CEBPAP49715 358 aaPredicted RBP21.45■■□□□ 1.02
CPSF4-210ENST00000469897 ZNF518AQ6AHZ1 1483 aa21.45■■□□□ 1.02
CPSF4-210ENST00000469897 PCF11O94913 1555 aaKnown RBP21.44■■□□□ 1.02
CPSF4-210ENST00000469897 C9orf84Q5VXU9 1444 aa21.43■■□□□ 1.02
CPSF4-210ENST00000469897 MYO5CQ9NQX4 1742 aa21.43■■□□□ 1.02
CPSF4-210ENST00000469897 TRAPPC8Q9Y2L5 1435 aa21.42■■□□□ 1.02
CPSF4-210ENST00000469897 LRRIQ1Q96JM4 1722 aa21.41■■□□□ 1.02
CPSF4-210ENST00000469897 SIGLEC1Q9BZZ2 1709 aa21.41■■□□□ 1.02
CPSF4-210ENST00000469897 LMTK3Q96Q04 1460 aa21.41■■□□□ 1.02
CPSF4-210ENST00000469897 RIMS1Q86UR5 1692 aaKnown RBP21.4■■□□□ 1.02
CPSF4-210ENST00000469897 FYCO1Q9BQS8 1478 aa21.4■■□□□ 1.02
CPSF4-210ENST00000469897 ARHGEF12Q9NZN5 1544 aa21.39■■□□□ 1.02
CPSF4-210ENST00000469897 HNRNPMP52272 730 aaKnown RBP eCLIP21.39■■□□□ 1.01
CPSF4-210ENST00000469897 CFDP1Q9UEE9 299 aaPredicted RBP21.36■■□□□ 1.01
CPSF4-210ENST00000469897 MLH3Q9UHC1 1453 aa21.36■■□□□ 1.01
CPSF4-210ENST00000469897 KDM5CP41229 1560 aa21.34■■□□□ 1.01
CPSF4-210ENST00000469897 GPATCH8Q9UKJ3 1502 aaKnown RBP21.34■■□□□ 1.01
CPSF4-210ENST00000469897 ESF1Q9H501 851 aaKnown RBP21.32■■□□□ 1
CPSF4-210ENST00000469897 MTUS2Q5JR59 1369 aa21.32■■□□□ 1
CPSF4-210ENST00000469897 CDC42BPBQ9Y5S2 1711 aa21.32■■□□□ 1
CPSF4-210ENST00000469897 FBXO41Q8TF61 875 aa21.31■■□□□ 1
CPSF4-210ENST00000469897 CCNB3Q8WWL7 1395 aa21.31■■□□□ 1
CPSF4-210ENST00000469897 SPAG9O60271 1321 aaKnown RBP21.3■■□□□ 1
CPSF4-210ENST00000469897 ABCC1P33527 1531 aa21.29■■□□□ 1
CPSF4-210ENST00000469897 LOC105371045A0A1W2PR82 267 aa21.29■■□□□ 1
CPSF4-210ENST00000469897 PREX2Q70Z35 1606 aa21.29■■□□□ 1
CPSF4-210ENST00000469897 DIP2CQ9Y2E4 1556 aa21.27■■□□□ 1
CPSF4-210ENST00000469897 ZNF644Q9H582 1327 aaPredicted RBP21.27■□□□□ 0.99
CPSF4-210ENST00000469897 CEP162Q5TB80 1403 aa21.25■□□□□ 0.99
CPSF4-210ENST00000469897 KIAA1107Q9UPP5 1409 aa21.22■□□□□ 0.99
CPSF4-210ENST00000469897 FER1L4A9Z1Z3 1794 aa21.22■□□□□ 0.99
CPSF4-210ENST00000469897 ABCA6Q8N139 1617 aa21.22■□□□□ 0.99
CPSF4-210ENST00000469897 AGLP35573 1532 aa21.21■□□□□ 0.99
CPSF4-210ENST00000469897 SAMD9LQ8IVG5 1584 aa21.21■□□□□ 0.99
CPSF4-210ENST00000469897 REREQ9P2R6 1566 aa21.21■□□□□ 0.99
CPSF4-210ENST00000469897 CDC42BPAQ5VT25 1732 aa21.21■□□□□ 0.99
CPSF4-210ENST00000469897 SYCP2Q9BX26 1530 aa21.19■□□□□ 0.98
CPSF4-210ENST00000469897 ITSN2Q9NZM3 1697 aa21.19■□□□□ 0.98
CPSF4-210ENST00000469897 GGT6Q6P531 493 aa21.18■□□□□ 0.98
CPSF4-210ENST00000469897 PLEKHH2Q8IVE3 1493 aa21.18■□□□□ 0.98
CPSF4-210ENST00000469897 DMRT2Q9Y5R5 561 aa21.17■□□□□ 0.98
CPSF4-210ENST00000469897 UHRF1BP1Q6BDS2 1440 aa21.17■□□□□ 0.98
CPSF4-210ENST00000469897 KIDINS220Q9ULH0 1771 aa21.16■□□□□ 0.98
CPSF4-210ENST00000469897 CERKQ8TCT0 537 aa21.16■□□□□ 0.98
CPSF4-210ENST00000469897 ZMYM3Q14202 1370 aa21.14■□□□□ 0.98
CPSF4-210ENST00000469897 CNTLNQ9NXG0 1405 aa21.12■□□□□ 0.97
CPSF4-210ENST00000469897 A2MP01023 1474 aa21.12■□□□□ 0.97
CPSF4-210ENST00000469897 MBD5Q9P267 1494 aa21.11■□□□□ 0.97
CPSF4-210ENST00000469897 ATP7AQ04656 1500 aa21.09■□□□□ 0.97
CPSF4-210ENST00000469897 EHBP1L1Q8N3D4 1523 aa21.09■□□□□ 0.97
CPSF4-210ENST00000469897 TIAM1Q13009 1591 aa21.07■□□□□ 0.96
CPSF4-210ENST00000469897 RSPH4AQ5TD94 716 aa21.07■□□□□ 0.96
CPSF4-210ENST00000469897 PREX1Q8TCU6 1659 aa21.06■□□□□ 0.96
CPSF4-210ENST00000469897 PPP6R1Q9UPN7 881 aa21.06■□□□□ 0.96
CPSF4-210ENST00000469897 NCOA2Q15596 1464 aa21.06■□□□□ 0.96
CPSF4-210ENST00000469897 KANK4Q5T7N3 995 aaPredicted RBP21.05■□□□□ 0.96
CPSF4-210ENST00000469897 RTEL1-TNFRSF6BF6WH68 1400 aa21.04■□□□□ 0.96
CPSF4-210ENST00000469897 DHX29Q7Z478 1369 aaKnown RBP21.04■□□□□ 0.96
CPSF4-210ENST00000469897 C3P01024 1663 aa21.03■□□□□ 0.96
CPSF4-210ENST00000469897 KIF3BO15066 747 aa21.03■□□□□ 0.96
CPSF4-210ENST00000469897 TSPY4P0CV99 314 aa21.03■□□□□ 0.96
CPSF4-210ENST00000469897 TSPY10P0CW01 314 aa21.03■□□□□ 0.96
CPSF4-210ENST00000469897 VPS8Q8N3P4 1428 aa21.02■□□□□ 0.96
CPSF4-210ENST00000469897 INO80Q9ULG1 1556 aaPredicted RBP21.02■□□□□ 0.95
CPSF4-210ENST00000469897 NPATQ14207 1427 aa21.01■□□□□ 0.95
CPSF4-210ENST00000469897 SUPT6HQ7KZ85 1726 aaKnown RBP21.01■□□□□ 0.95
CPSF4-210ENST00000469897 NCKAP5LQ9HCH0 1330 aa21■□□□□ 0.95
CPSF4-210ENST00000469897 PLXNC1O60486 1568 aa20.98■□□□□ 0.95
CPSF4-210ENST00000469897 PTPRTO14522 1441 aa20.98■□□□□ 0.95
CPSF4-210ENST00000469897 PTPRKQ15262 1439 aa20.97■□□□□ 0.95
CPSF4-210ENST00000469897 CAMSAP2Q08AD1 1489 aa20.97■□□□□ 0.95
CPSF4-210ENST00000469897 LRRC9Q6ZRR7 1453 aa20.97■□□□□ 0.95
CPSF4-210ENST00000469897 FBXO31Q5XUX0 539 aaPredicted RBP20.97■□□□□ 0.95
CPSF4-210ENST00000469897 SETD1BQ9UPS6 1966 aaKnown RBP20.97■□□□□ 0.95
CPSF4-210ENST00000469897 STRCQ7RTU9 1775 aa20.96■□□□□ 0.95
CPSF4-210ENST00000469897 CCDC141Q6ZP82 1450 aa20.95■□□□□ 0.94
CPSF4-210ENST00000469897 WASHC2CQ9Y4E1 1318 aa20.95■□□□□ 0.94
CPSF4-210ENST00000469897 NCOA1Q15788 1441 aa20.95■□□□□ 0.94
CPSF4-210ENST00000469897 CLTCQ00610 1675 aaKnown RBP20.91■□□□□ 0.94
CPSF4-210ENST00000469897 APLP2Q06481 763 aa20.9■□□□□ 0.94
CPSF4-210ENST00000469897 PKD2Q13563 968 aa20.9■□□□□ 0.94
CPSF4-210ENST00000469897 MROH2AA6NES4 1674 aa20.89■□□□□ 0.94
CPSF4-210ENST00000469897 CAMSAP1Q5T5Y3 1602 aa20.89■□□□□ 0.94
CPSF4-210ENST00000469897 ADGBQ8N7X0 1667 aa20.88■□□□□ 0.93
CPSF4-210ENST00000469897 MAP3K1Q13233 1512 aa20.84■□□□□ 0.93
CPSF4-210ENST00000469897 ZNF335Q9H4Z2 1342 aaPredicted RBP20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms