RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 GPATCH8Q9UKJ3 1502 aaKnown RBP11.13□□□□□ -0.63
COL6A3-208ENST00000468792 PLEKHD1A6NEE1 506 aa11.12□□□□□ -0.63
COL6A3-208ENST00000468792 DNMT1P26358 1616 aaKnown RBP11.12□□□□□ -0.63
COL6A3-208ENST00000468792 ABCC10Q5T3U5 1492 aa11.11□□□□□ -0.63
COL6A3-208ENST00000468792 DAPK1P53355 1430 aa11.1□□□□□ -0.63
COL6A3-208ENST00000468792 ABCC5O15440 1437 aa11.09□□□□□ -0.63
COL6A3-208ENST00000468792 KIF14Q15058 1648 aa11.09□□□□□ -0.63
COL6A3-208ENST00000468792 UHRF1BP1LA0JNW5 1464 aa11.09□□□□□ -0.63
COL6A3-208ENST00000468792 DIEXFQ68CQ4 756 aaKnown RBP11.08□□□□□ -0.64
COL6A3-208ENST00000468792 ADGRL2O95490 1459 aa11.07□□□□□ -0.64
COL6A3-208ENST00000468792 CFDP1Q9UEE9 299 aaPredicted RBP11.07□□□□□ -0.64
COL6A3-208ENST00000468792 ABCC2Q92887 1545 aa11.07□□□□□ -0.64
COL6A3-208ENST00000468792 CAMSAP2Q08AD1 1489 aa11.06□□□□□ -0.64
COL6A3-208ENST00000468792 SHANK2Q9UPX8 1470 aa11.06□□□□□ -0.64
COL6A3-208ENST00000468792 RSPH4AQ5TD94 716 aa11.05□□□□□ -0.64
COL6A3-208ENST00000468792 SLC4A1APQ9BWU0 796 aaKnown RBP11.04□□□□□ -0.64
COL6A3-208ENST00000468792 CDC42BPAQ5VT25 1732 aa11.04□□□□□ -0.64
COL6A3-208ENST00000468792 NCOA1Q15788 1441 aa11.03□□□□□ -0.64
COL6A3-208ENST00000468792 ARID3CA6NKF2 412 aa11.03□□□□□ -0.64
COL6A3-208ENST00000468792 ARHGEF5Q12774 1597 aa11.03□□□□□ -0.64
COL6A3-208ENST00000468792 CROCC2H7BZ55 1655 aa11.02□□□□□ -0.64
COL6A3-208ENST00000468792 ADGBQ8N7X0 1667 aa11.02□□□□□ -0.64
COL6A3-208ENST00000468792 KDM5BQ9UGL1 1544 aa11.02□□□□□ -0.65
COL6A3-208ENST00000468792 ZNF644Q9H582 1327 aaPredicted RBP11.01□□□□□ -0.65
COL6A3-208ENST00000468792 SCAF1Q9H7N4 1312 aaKnown RBP11.01□□□□□ -0.65
COL6A3-208ENST00000468792 MSH5O43196 834 aa11□□□□□ -0.65
COL6A3-208ENST00000468792 PPP1R15AO75807 674 aaPredicted RBP11□□□□□ -0.65
COL6A3-208ENST00000468792 RRP7BPQ9NSQ0 103 aa11□□□□□ -0.65
COL6A3-208ENST00000468792 ANKRD30AQ9BXX3 1397 aa11□□□□□ -0.65
COL6A3-208ENST00000468792 ERCC6L2Q5T890 1561 aa10.99□□□□□ -0.65
COL6A3-208ENST00000468792 PREX2Q70Z35 1606 aa10.99□□□□□ -0.65
COL6A3-208ENST00000468792 KIAA1107Q9UPP5 1409 aa10.99□□□□□ -0.65
COL6A3-208ENST00000468792 DENND4BO75064 1496 aaPredicted RBP10.99□□□□□ -0.65
COL6A3-208ENST00000468792 PLEKHH2Q8IVE3 1493 aa10.99□□□□□ -0.65
COL6A3-208ENST00000468792 SIN3AQ96ST3 1273 aa10.98□□□□□ -0.65
COL6A3-208ENST00000468792 CHIC2Q9UKJ5 165 aa10.98□□□□□ -0.65
COL6A3-208ENST00000468792 MBD5Q9P267 1494 aa10.98□□□□□ -0.65
COL6A3-208ENST00000468792 MPHOSPH9Q99550 1183 aa10.97□□□□□ -0.65
COL6A3-208ENST00000468792 ARAP3Q8WWN8 1544 aa10.97□□□□□ -0.65
COL6A3-208ENST00000468792 KDM6BO15054 1643 aa10.97□□□□□ -0.65
COL6A3-208ENST00000468792 CDC42BPBQ9Y5S2 1711 aa10.95□□□□□ -0.66
COL6A3-208ENST00000468792 MAST1Q9Y2H9 1570 aa10.95□□□□□ -0.66
COL6A3-208ENST00000468792 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.95□□□□□ -0.66
COL6A3-208ENST00000468792 C9orf84Q5VXU9 1444 aa10.95□□□□□ -0.66
COL6A3-208ENST00000468792 TONSLQ96HA7 1378 aa10.95□□□□□ -0.66
COL6A3-208ENST00000468792 TSPY4P0CV99 314 aa10.95□□□□□ -0.66
COL6A3-208ENST00000468792 TSPY10P0CW01 314 aa10.95□□□□□ -0.66
COL6A3-208ENST00000468792 CCDC141Q6ZP82 1450 aa10.94□□□□□ -0.66
COL6A3-208ENST00000468792 ANKRD30BQ9BXX2 1392 aa10.94□□□□□ -0.66
COL6A3-208ENST00000468792 ZCCHC11Q5TAX3 1644 aaKnown RBP10.94□□□□□ -0.66
COL6A3-208ENST00000468792 KDM5DQ9BY66 1539 aa10.94□□□□□ -0.66
COL6A3-208ENST00000468792 PLCH2O75038 1416 aa10.93□□□□□ -0.66
COL6A3-208ENST00000468792 ANKRD50Q9ULJ7 1429 aa10.93□□□□□ -0.66
COL6A3-208ENST00000468792 NEUROD1Q13562 356 aa10.93□□□□□ -0.66
COL6A3-208ENST00000468792 SAMD9LQ8IVG5 1584 aa10.93□□□□□ -0.66
COL6A3-208ENST00000468792 MYO5CQ9NQX4 1742 aa10.92□□□□□ -0.66
COL6A3-208ENST00000468792 NPM3O75607 178 aaKnown RBP10.92□□□□□ -0.66
COL6A3-208ENST00000468792 TRIM52Q96A61 297 aa10.92□□□□□ -0.66
COL6A3-208ENST00000468792 PZPP20742 1482 aa10.92□□□□□ -0.66
COL6A3-208ENST00000468792 RPRD2Q5VT52 1461 aaKnown RBP10.92□□□□□ -0.66
COL6A3-208ENST00000468792 TTC37Q6PGP7 1564 aa10.91□□□□□ -0.66
COL6A3-208ENST00000468792 OSCARQ8IYS5 282 aa10.91□□□□□ -0.66
COL6A3-208ENST00000468792 ZNF777Q9ULD5 760 aaPredicted RBP10.91□□□□□ -0.66
COL6A3-208ENST00000468792 CNKSR2Q8WXI2 1034 aa10.9□□□□□ -0.66
COL6A3-208ENST00000468792 ARHGAP5Q13017 1502 aa10.89□□□□□ -0.67
COL6A3-208ENST00000468792 PLXNC1O60486 1568 aa10.89□□□□□ -0.67
COL6A3-208ENST00000468792 EFCAB2Q5VUJ9 269 aa10.88□□□□□ -0.67
COL6A3-208ENST00000468792 KIF15Q9NS87 1388 aa10.88□□□□□ -0.67
COL6A3-208ENST00000468792 WDR7Q9Y4E6 1490 aa10.87□□□□□ -0.67
COL6A3-208ENST00000468792 HNRNPMP52272 730 aaKnown RBP eCLIP10.87□□□□□ -0.67
COL6A3-208ENST00000468792 RTEL1-TNFRSF6BF6WH68 1400 aa10.86□□□□□ -0.67
COL6A3-208ENST00000468792 ABCC1P33527 1531 aa10.85□□□□□ -0.67
COL6A3-208ENST00000468792 SYCP2Q9BX26 1530 aa10.85□□□□□ -0.67
COL6A3-208ENST00000468792 ABCA9Q8IUA7 1624 aa10.85□□□□□ -0.67
COL6A3-208ENST00000468792 MIER1Q8N108 512 aa10.84□□□□□ -0.67
COL6A3-208ENST00000468792 TEX14Q8IWB6 1497 aa10.84□□□□□ -0.67
COL6A3-208ENST00000468792 DUOX2Q9NRD8 1548 aa10.84□□□□□ -0.67
COL6A3-208ENST00000468792 ERBINQ96RT1 1412 aa10.84□□□□□ -0.67
COL6A3-208ENST00000468792 UNC13BO14795 1591 aa10.83□□□□□ -0.68
COL6A3-208ENST00000468792 NUP155O75694 1391 aa10.82□□□□□ -0.68
COL6A3-208ENST00000468792 CENPBP07199 599 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-208ENST00000468792 L3MBTL2Q969R5 705 aa10.82□□□□□ -0.68
COL6A3-208ENST00000468792 ARHGEF12Q9NZN5 1544 aa10.82□□□□□ -0.68
COL6A3-208ENST00000468792 MAGI2Q86UL8 1455 aa10.81□□□□□ -0.68
COL6A3-208ENST00000468792 KCNH8Q96L42 1107 aa10.81□□□□□ -0.68
COL6A3-208ENST00000468792 PKD2Q13563 968 aa10.8□□□□□ -0.68
COL6A3-208ENST00000468792 ATP10AO60312 1499 aa10.8□□□□□ -0.68
COL6A3-208ENST00000468792 UHRF1BP1Q6BDS2 1440 aa10.79□□□□□ -0.68
COL6A3-208ENST00000468792 ASXL2Q76L83 1435 aa10.79□□□□□ -0.68
COL6A3-208ENST00000468792 FAM135AQ9P2D6 1515 aa10.79□□□□□ -0.68
COL6A3-208ENST00000468792 IQGAP3Q86VI3 1631 aa10.78□□□□□ -0.68
COL6A3-208ENST00000468792 FANCAO15360 1455 aa10.77□□□□□ -0.69
COL6A3-208ENST00000468792 NPM1P06748 294 aaKnown RBP eCLIP10.77□□□□□ -0.69
COL6A3-208ENST00000468792 TRAPPC8Q9Y2L5 1435 aa10.76□□□□□ -0.69
COL6A3-208ENST00000468792 EIF4G2P78344 907 aaKnown RBP eCLIP10.76□□□□□ -0.69
COL6A3-208ENST00000468792 SPATA31E1Q6ZUB1 1445 aa10.75□□□□□ -0.69
COL6A3-208ENST00000468792 ZFYVE16Q7Z3T8 1539 aa10.75□□□□□ -0.69
COL6A3-208ENST00000468792 SPAG9O60271 1321 aaKnown RBP10.75□□□□□ -0.69
COL6A3-208ENST00000468792 CFAP74Q9C0B2 1584 aa10.74□□□□□ -0.69
COL6A3-208ENST00000468792 INO80Q9ULG1 1556 aaPredicted RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms