RNA–Protein interactions for RNA: ENST00000468117.1

TMEM53-207, Transcript of transmembrane protein 53, humanhuman

TSL 3

Gene TMEM53, Length 2,017 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-207ENST00000468117 RIMBP3CA6NJZ7 1639 aa30.66■■■□□ 2.5
TMEM53-207ENST00000468117 RIMBP3BA6NNM3 1639 aa30.66■■■□□ 2.5
TMEM53-207ENST00000468117 RIMBP3Q9UFD9 1639 aa30.66■■■□□ 2.5
TMEM53-207ENST00000468117 MYO5CQ9NQX4 1742 aa30.64■■■□□ 2.49
TMEM53-207ENST00000468117 DAPK1P53355 1430 aa30.63■■■□□ 2.49
TMEM53-207ENST00000468117 WDR7Q9Y4E6 1490 aa30.63■■■□□ 2.49
TMEM53-207ENST00000468117 CHIC2Q9UKJ5 165 aa30.63■■■□□ 2.49
TMEM53-207ENST00000468117 HFM1A2PYH4 1435 aa30.61■■■□□ 2.49
TMEM53-207ENST00000468117 ABCC5O15440 1437 aa30.6■■■□□ 2.49
TMEM53-207ENST00000468117 NPM1P06748 294 aaKnown RBP eCLIP30.58■■■□□ 2.49
TMEM53-207ENST00000468117 DHX57Q6P158 1386 aaKnown RBP30.58■■■□□ 2.49
TMEM53-207ENST00000468117 ASXL2Q76L83 1435 aa30.57■■■□□ 2.48
TMEM53-207ENST00000468117 NAIPQ13075 1403 aa30.56■■■□□ 2.48
TMEM53-207ENST00000468117 ARHGAP5Q13017 1502 aa30.55■■■□□ 2.48
TMEM53-207ENST00000468117 SAMD9LQ8IVG5 1584 aa30.55■■■□□ 2.48
TMEM53-207ENST00000468117 CYB5RLQ6IPT4 315 aa30.54■■■□□ 2.48
TMEM53-207ENST00000468117 CROCC2H7BZ55 1655 aa30.53■■■□□ 2.48
TMEM53-207ENST00000468117 RRP7BPQ9NSQ0 103 aa30.53■■■□□ 2.48
TMEM53-207ENST00000468117 GCC2Q8IWJ2 1684 aa30.53■■■□□ 2.48
TMEM53-207ENST00000468117 AKNAQ7Z591 1439 aa30.49■■■□□ 2.47
TMEM53-207ENST00000468117 PLCH2O75038 1416 aa30.48■■■□□ 2.47
TMEM53-207ENST00000468117 ABCA9Q8IUA7 1624 aa30.46■■■□□ 2.47
TMEM53-207ENST00000468117 ROCK1Q13464 1354 aa30.46■■■□□ 2.47
TMEM53-207ENST00000468117 ADGBQ8N7X0 1667 aa30.46■■■□□ 2.47
TMEM53-207ENST00000468117 HNRNPMP52272 730 aaKnown RBP eCLIP30.44■■■□□ 2.46
TMEM53-207ENST00000468117 ARHGEF5Q12774 1597 aa30.43■■■□□ 2.46
TMEM53-207ENST00000468117 MBD5Q9P267 1494 aa30.43■■■□□ 2.46
TMEM53-207ENST00000468117 SYCP2Q9BX26 1530 aa30.42■■■□□ 2.46
TMEM53-207ENST00000468117 KDM6BO15054 1643 aa30.41■■■□□ 2.46
TMEM53-207ENST00000468117 SHANK2Q9UPX8 1470 aa30.37■■■□□ 2.45
TMEM53-207ENST00000468117 ARAP3Q8WWN8 1544 aa30.37■■■□□ 2.45
TMEM53-207ENST00000468117 EFCAB2Q5VUJ9 269 aa30.37■■■□□ 2.45
TMEM53-207ENST00000468117 CLSPNQ9HAW4 1339 aa30.37■■■□□ 2.45
TMEM53-207ENST00000468117 ADGRL2O95490 1459 aa30.37■■■□□ 2.45
TMEM53-207ENST00000468117 NCOA1Q15788 1441 aa30.36■■■□□ 2.45
TMEM53-207ENST00000468117 CCDC141Q6ZP82 1450 aa30.36■■■□□ 2.45
TMEM53-207ENST00000468117 C9orf84Q5VXU9 1444 aa30.35■■■□□ 2.45
TMEM53-207ENST00000468117 PLEKHH2Q8IVE3 1493 aa30.35■■■□□ 2.45
TMEM53-207ENST00000468117 KIAA1107Q9UPP5 1409 aa30.33■■■□□ 2.45
TMEM53-207ENST00000468117 TSPY4P0CV99 314 aa30.33■■■□□ 2.45
TMEM53-207ENST00000468117 TSPY10P0CW01 314 aa30.33■■■□□ 2.45
TMEM53-207ENST00000468117 MAPKBP1O60336 1514 aa30.33■■■□□ 2.45
TMEM53-207ENST00000468117 ARHGEF12Q9NZN5 1544 aa30.32■■■□□ 2.44
TMEM53-207ENST00000468117 ANKRD30AQ9BXX3 1397 aa30.31■■■□□ 2.44
TMEM53-207ENST00000468117 RSPH4AQ5TD94 716 aa30.31■■■□□ 2.44
TMEM53-207ENST00000468117 ABCC1P33527 1531 aa30.31■■■□□ 2.44
TMEM53-207ENST00000468117 FANCAO15360 1455 aa30.28■■■□□ 2.44
TMEM53-207ENST00000468117 MAST1Q9Y2H9 1570 aa30.22■■■□□ 2.43
TMEM53-207ENST00000468117 TRIM52Q96A61 297 aa30.21■■■□□ 2.43
TMEM53-207ENST00000468117 CD109Q6YHK3 1445 aa30.21■■■□□ 2.43
TMEM53-207ENST00000468117 TRAPPC8Q9Y2L5 1435 aa30.2■■■□□ 2.42
TMEM53-207ENST00000468117 KIF15Q9NS87 1388 aa30.18■■■□□ 2.42
TMEM53-207ENST00000468117 ANKRD50Q9ULJ7 1429 aa30.17■■■□□ 2.42
TMEM53-207ENST00000468117 ADGRL1O94910 1474 aa30.15■■■□□ 2.42
TMEM53-207ENST00000468117 PLXNC1O60486 1568 aa30.12■■■□□ 2.41
TMEM53-207ENST00000468117 AFAP1Q8N556 730 aa30.11■■■□□ 2.41
TMEM53-207ENST00000468117 CFAP74Q9C0B2 1584 aa30.11■■■□□ 2.41
TMEM53-207ENST00000468117 ACIN1Q9UKV3 1341 aaKnown RBP30.11■■■□□ 2.41
TMEM53-207ENST00000468117 SCAPERQ9BY12 1400 aa30.1■■■□□ 2.41
TMEM53-207ENST00000468117 MAP3K4Q9Y6R4 1608 aa30.1■■■□□ 2.41
TMEM53-207ENST00000468117 DENND4BO75064 1496 aaPredicted RBP30.09■■■□□ 2.41
TMEM53-207ENST00000468117 GLI2P10070 1586 aa30.08■■■□□ 2.41
TMEM53-207ENST00000468117 SIN3AQ96ST3 1273 aa30.07■■■□□ 2.4
TMEM53-207ENST00000468117 MPHOSPH9Q99550 1183 aa30.07■■■□□ 2.4
TMEM53-207ENST00000468117 DIP2BQ9P265 1576 aa30.06■■■□□ 2.4
TMEM53-207ENST00000468117 SPAG9O60271 1321 aaKnown RBP30.05■■■□□ 2.4
TMEM53-207ENST00000468117 ZFYVE16Q7Z3T8 1539 aa30.03■■■□□ 2.4
TMEM53-207ENST00000468117 NEUROD1Q13562 356 aa30.01■■■□□ 2.4
TMEM53-207ENST00000468117 FAM69CQ0P6D2 419 aa30■■■□□ 2.39
TMEM53-207ENST00000468117 PZPP20742 1482 aa30■■■□□ 2.39
TMEM53-207ENST00000468117 RTEL1-TNFRSF6BF6WH68 1400 aa30■■■□□ 2.39
TMEM53-207ENST00000468117 INO80Q9ULG1 1556 aaPredicted RBP30■■■□□ 2.39
TMEM53-207ENST00000468117 DUOX2Q9NRD8 1548 aa29.99■■■□□ 2.39
TMEM53-207ENST00000468117 SLC4A1APQ9BWU0 796 aaKnown RBP29.98■■■□□ 2.39
TMEM53-207ENST00000468117 ATP7AQ04656 1500 aa29.98■■■□□ 2.39
TMEM53-207ENST00000468117 NEO1Q92859 1461 aa29.98■■■□□ 2.39
TMEM53-207ENST00000468117 ZNF518AQ6AHZ1 1483 aa29.96■■■□□ 2.39
TMEM53-207ENST00000468117 FOXD1Q16676 465 aa29.95■■■□□ 2.39
TMEM53-207ENST00000468117 TSPOAP1O95153 1857 aa29.95■■■□□ 2.38
TMEM53-207ENST00000468117 NUP155O75694 1391 aa29.94■■■□□ 2.38
TMEM53-207ENST00000468117 POGZQ7Z3K3 1410 aa29.92■■■□□ 2.38
TMEM53-207ENST00000468117 KDM5DQ9BY66 1539 aa29.92■■■□□ 2.38
TMEM53-207ENST00000468117 ERBINQ96RT1 1412 aa29.91■■■□□ 2.38
TMEM53-207ENST00000468117 KIDINS220Q9ULH0 1771 aa29.91■■■□□ 2.38
TMEM53-207ENST00000468117 MYT1LQ9UL68 1186 aa29.91■■■□□ 2.38
TMEM53-207ENST00000468117 KIF13AQ9H1H9 1805 aa29.91■■■□□ 2.38
TMEM53-207ENST00000468117 UNC13BO14795 1591 aa29.89■■■□□ 2.38
TMEM53-207ENST00000468117 KDM5CP41229 1560 aa29.89■■■□□ 2.38
TMEM53-207ENST00000468117 PPRC1Q5VV67 1664 aaKnown RBP29.87■■■□□ 2.37
TMEM53-207ENST00000468117 ANKRD30BQ9BXX2 1392 aa29.83■■■□□ 2.37
TMEM53-207ENST00000468117 PKD2Q13563 968 aa29.83■■■□□ 2.37
TMEM53-207ENST00000468117 RICTORQ6R327 1708 aa29.82■■■□□ 2.36
TMEM53-207ENST00000468117 FAM135AQ9P2D6 1515 aa29.82■■■□□ 2.36
TMEM53-207ENST00000468117 RAPGEF3O95398 923 aa29.82■■■□□ 2.36
TMEM53-207ENST00000468117 TIMELESSQ9UNS1 1208 aa29.82■■■□□ 2.36
TMEM53-207ENST00000468117 HECW2Q9P2P5 1572 aa29.82■■■□□ 2.36
TMEM53-207ENST00000468117 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.81■■■□□ 2.36
TMEM53-207ENST00000468117 TONSLQ96HA7 1378 aa29.79■■■□□ 2.36
TMEM53-207ENST00000468117 MLH3Q9UHC1 1453 aa29.79■■■□□ 2.36
TMEM53-207ENST00000468117 MAGI2Q86UL8 1455 aa29.78■■■□□ 2.36
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms